Clone BS16536 Report

Search the DGRC for BS16536

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCsat-RA
Protein status:BS16536.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16536.3prime Sequence

852 bp (744 high quality bases) assembled on 2007-05-15

> BS16536.3prime
ATGGTCTAGAAAGCTTCTAGACGCGCGGCAGTAGCTTCTCCTCATCGCCG
CCAGGACCGTGCATAGTTGGCTTCGGCGCCGACCTGGCCGGATCGTAGCC
GTAGAGAAAGATGGAGGCGATGACCAGGCCAGCTCCGAAGCTGAACTGCA
GCGTGAGATTGAAGTCGAAGATGTATATGGAGGCCACGCACGAGATGATG
ATGGCCAGCGAGGTGGCGAAGCCCTTGAGAATGTTATCCGCGTACTTGAC
CACCACGGCAACGATCAATCCACCGCCGGCCTGCAGCAGGACCAGGTACC
AGACAAACAGATCGTAGCCCTTGAAGAATCCCTGGTCGAAGATCCTACTG
CCGTCGTTAACGAAACAGGTGAGCAGGCCGAAGGGAATGCTGAGCAGACT
CAACTGCACATTCCTCATCCACACGGAGATCTCGGCACCCTTGAGGATCT
TCTCAAAGTAGATGCCCGCGAATCCGGAGAGGAAGCAGGCGCCCAGTGCG
GCCCACAGTCCGAGCATCCTGTTCTGCTCGGGAGCACCGCCAGAGGAGGC
GGCCGTGGCTGCAGCTGCGGCACCACCGGCTGAGCCACTCGTCGGACCCT
CCGTTTGGGCCAACTGCACCAGGACGATGCCCATCACCAGGAGCAGCAGC
GCACCCCACTGCGTGTTCAGCAGCTTGCGGCGCAGAATGACAACCGCGAA
CATGGCCGTGGTGAGAATCTTCAGCTGGTACGTCACCTGGTAGGTGGCCG
CATCCAAATGGGACGCAGAGACGTACAGCAGATTGTTCTGAACGATATAG
ACCAGCGAGGGGACACACACCTTCAGCGTGTCCATGGGATTCGCAATGAT
GG

BS16536.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2675-PA 1074 Csat-RA 239..1074 852..17 4005 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:10
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 571..1406 852..17 4075 99.2 Minus
Csat-RB 2110 CG2675-RB 561..1396 852..17 4075 99.2 Minus
Csat-RA 2013 CG2675-RA 464..1299 852..17 4075 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:04
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2701838..2702673 17..852 4075 99.2 Plus
Blast to na_te.dros performed on 2015-02-13 02:31:07 has no hits.

BS16536.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:04 Download gff for BS16536.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2675-PA 239..1074 17..852 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:21 Download gff for BS16536.3prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 464..1301 12..852 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:55 Download gff for BS16536.3prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 464..1301 12..852 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:55 Download gff for BS16536.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2701834..2702673 12..852 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:21 Download gff for BS16536.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2595867..2596706 12..852 98   Plus

BS16536.5prime Sequence

822 bp (821 high quality bases) assembled on 2007-05-15

> BS16536.5prime
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGGACCTGGTCCTGCT

BS16536.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG2675-PA 1074 Csat-RA 1..806 17..822 3905 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 332..1138 16..822 3960 99.4 Plus
Csat-RA 2013 CG2675-RA 225..1031 16..822 3960 99.4 Plus
Csat-RB 2110 CG2675-RB 339..1128 33..822 3875 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2702106..2702776 822..152 3280 99.3 Minus
X 23542271 X 2703288..2703407 152..33 600 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:59:03 has no hits.

BS16536.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:22 Download gff for BS16536.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2675-PA 1..806 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:39 Download gff for BS16536.5prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 220..1031 10..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:10 Download gff for BS16536.5prime
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 220..1031 10..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:10 Download gff for BS16536.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2702106..2702775 153..822 99 <- Minus
X 2703288..2703407 33..152 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:39 Download gff for BS16536.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2596139..2596808 153..822 99 <- Minus
arm_X 2597321..2597440 33..152 100 <- Minus

BS16536.complete Sequence

1106 bp assembled on 2007-05-07

GenBank Submission: FJ638163

> BS16536.complete
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGTACCTGGTCCTGCTGCAGGCCGGCGGTGGATTGATCGTTGCC
GTGGTGGTCAAGTACGCGGATAACATTCTCAAGGGCTTCGCCACCTCGCT
GGCCATCATCATCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATC
TCACGCTGCAGTTCAGCTTCGGAGCTGGCCTGGTCATCGCCTCCATCTTT
CTCTACGGCTACGATCCGGCCAGGTCGGCGCCGAAGCCAACTATGCACGG
TCCTGGCGGCGATGAGGAGAAGCTACTGCCGCGCGTCTAGAAGCTTTCTA
GACCAT

BS16536.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:21
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 1074 CG2675-PC 1..1074 17..1090 5265 99.3 Plus
Csat-RA 1074 CG2675-PA 1..1074 17..1090 5265 99.3 Plus
Csat-RB 1107 CG2675-PB 50..1107 33..1090 5185 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-RC 2120 CG2675-RC 332..1406 16..1090 5270 99.3 Plus
Csat-RA 2013 CG2675-RA 225..1299 16..1090 5270 99.3 Plus
Csat-RB 2110 CG2675-RB 339..1396 33..1090 5185 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2701838..2702776 1090..152 4590 99.3 Minus
X 23542271 X 2703288..2703407 152..33 600 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:42:20 has no hits.

BS16536.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:50 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 1..1074 17..1090 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:03 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 251..1332 10..1095 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:53 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 226..1299 17..1090 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:50 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 251..1332 10..1095 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:00 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
Csat-RA 226..1299 17..1090 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:00 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
X 2701838..2702775 153..1090 99 <- Minus
X 2703288..2703407 33..152 100 <- Minus
X 2703505..2703520 17..32 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:53 Download gff for BS16536.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2597538..2597553 17..32 100   Minus
arm_X 2595871..2596808 153..1090 99 <- Minus
arm_X 2597321..2597440 33..152 100 <- Minus

BS16536.pep Sequence

Translation from 16 to 1089

> BS16536.pep
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRV*

BS16536.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:49
Subject Length Description Subject Range Query Range Score Percent Strand
Csat-PC 357 CG2675-PC 1..357 1..357 1799 100 Plus
Csat-PA 357 CG2675-PA 1..357 1..357 1799 100 Plus
Csat-PB 368 CG2675-PB 17..368 6..357 1768 99.7 Plus
CG14040-PA 388 CG14040-PA 48..349 45..334 229 25.9 Plus