Clone Sequence Records
BS16536.3prime Sequence
852 bp (744 high quality bases) assembled on 2007-05-15
> BS16536.3prime
ATGGTCTAGAAAGCTTCTAGACGCGCGGCAGTAGCTTCTCCTCATCGCCG
CCAGGACCGTGCATAGTTGGCTTCGGCGCCGACCTGGCCGGATCGTAGCC
GTAGAGAAAGATGGAGGCGATGACCAGGCCAGCTCCGAAGCTGAACTGCA
GCGTGAGATTGAAGTCGAAGATGTATATGGAGGCCACGCACGAGATGATG
ATGGCCAGCGAGGTGGCGAAGCCCTTGAGAATGTTATCCGCGTACTTGAC
CACCACGGCAACGATCAATCCACCGCCGGCCTGCAGCAGGACCAGGTACC
AGACAAACAGATCGTAGCCCTTGAAGAATCCCTGGTCGAAGATCCTACTG
CCGTCGTTAACGAAACAGGTGAGCAGGCCGAAGGGAATGCTGAGCAGACT
CAACTGCACATTCCTCATCCACACGGAGATCTCGGCACCCTTGAGGATCT
TCTCAAAGTAGATGCCCGCGAATCCGGAGAGGAAGCAGGCGCCCAGTGCG
GCCCACAGTCCGAGCATCCTGTTCTGCTCGGGAGCACCGCCAGAGGAGGC
GGCCGTGGCTGCAGCTGCGGCACCACCGGCTGAGCCACTCGTCGGACCCT
CCGTTTGGGCCAACTGCACCAGGACGATGCCCATCACCAGGAGCAGCAGC
GCACCCCACTGCGTGTTCAGCAGCTTGCGGCGCAGAATGACAACCGCGAA
CATGGCCGTGGTGAGAATCTTCAGCTGGTACGTCACCTGGTAGGTGGCCG
CATCCAAATGGGACGCAGAGACGTACAGCAGATTGTTCTGAACGATATAG
ACCAGCGAGGGGACACACACCTTCAGCGTGTCCATGGGATTCGCAATGAT
GG
BS16536.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2675-PA | 1074 | Csat-RA | 239..1074 | 852..17 | 4005 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:31:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 571..1406 | 852..17 | 4075 | 99.2 | Minus |
Csat-RB | 2110 | CG2675-RB | 561..1396 | 852..17 | 4075 | 99.2 | Minus |
Csat-RA | 2013 | CG2675-RA | 464..1299 | 852..17 | 4075 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:31:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2701838..2702673 | 17..852 | 4075 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:31:07 has no hits.
BS16536.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:04 Download gff for
BS16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2675-PA | 239..1074 | 17..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:47:21 Download gff for
BS16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 464..1301 | 12..852 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:34:55 Download gff for
BS16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 464..1301 | 12..852 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:34:55 Download gff for
BS16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2701834..2702673 | 12..852 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:47:21 Download gff for
BS16536.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2595867..2596706 | 12..852 | 98 | | Plus |
BS16536.5prime Sequence
822 bp (821 high quality bases) assembled on 2007-05-15
> BS16536.5prime
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGGACCTGGTCCTGCT
BS16536.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2675-PA | 1074 | Csat-RA | 1..806 | 17..822 | 3905 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 332..1138 | 16..822 | 3960 | 99.4 | Plus |
Csat-RA | 2013 | CG2675-RA | 225..1031 | 16..822 | 3960 | 99.4 | Plus |
Csat-RB | 2110 | CG2675-RB | 339..1128 | 33..822 | 3875 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2702106..2702776 | 822..152 | 3280 | 99.3 | Minus |
X | 23542271 | X | 2703288..2703407 | 152..33 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:59:03 has no hits.
BS16536.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:22 Download gff for
BS16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2675-PA | 1..806 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:47:39 Download gff for
BS16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 220..1031 | 10..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:31:10 Download gff for
BS16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 220..1031 | 10..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:31:10 Download gff for
BS16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2702106..2702775 | 153..822 | 99 | <- | Minus |
X | 2703288..2703407 | 33..152 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:47:39 Download gff for
BS16536.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2596139..2596808 | 153..822 | 99 | <- | Minus |
arm_X | 2597321..2597440 | 33..152 | 100 | <- | Minus |
BS16536.complete Sequence
1106 bp assembled on 2007-05-07
GenBank Submission: FJ638163
> BS16536.complete
GAAGTTATCAGTCGACATGAATAGCATACACATGAACGCCAATACGCTGA
AGTACATCAGCCTGCTGACGCTGACCCTGCAGAATGCCATCCTGGGCCTC
AGCATGCGCTACGCCCGCACCCGGCCAGGCGACATCTTCCTCAGCTCCAC
GGCCGTACTCATGGCAGAGTTCGCCAAACTGATCACGTGCCTGTTCCTGG
TCTTCAACGAGGAGGGCAAGGATGCCCAGAAGTTTGTACGCTCGCTGCAC
AAGACCATCATTGCGAATCCCATGGACACGCTGAAGGTGTGTGTCCCCTC
GCTGGTCTATATCGTTCAGAACAATCTGCTGTACGTCTCTGCGTCCCATT
TGGATGCGGCCACCTACCAGGTGACGTACCAGCTGAAGATTCTCACCACG
GCCATGTTCGCGGTTGTCATTCTGCGCCGCAAGCTGCTGAACACGCAGTG
GGGTGCGCTGCTGCTCCTGGTGATGGGCATCGTCCTGGTGCAGTTGGCCC
AAACGGAGGGTCCGACGAGTGGCTCAGCCGGTGGTGCCGCAGCTGCAGCC
ACGGCCGCCTCCTCTGGCGGTGCTCCCGAGCAGAACAGGATGCTCGGACT
GTGGGCCGCACTGGGCGCCTGCTTCCTCTCCGGATTCGCGGGCATCTACT
TTGAGAAGATCCTCAAGGGTGCCGAGATCTCCGTGTGGATGAGGAATGTG
CAGTTGAGTCTGCTCAGCATTCCCTTCGGCCTGCTCACCTGTTTCGTTAA
CGACGGCAGTAGGATCTTCGACCAGGGATTCTTCAAGGGCTACGATCTGT
TTGTCTGGTACCTGGTCCTGCTGCAGGCCGGCGGTGGATTGATCGTTGCC
GTGGTGGTCAAGTACGCGGATAACATTCTCAAGGGCTTCGCCACCTCGCT
GGCCATCATCATCTCGTGCGTGGCCTCCATATACATCTTCGACTTCAATC
TCACGCTGCAGTTCAGCTTCGGAGCTGGCCTGGTCATCGCCTCCATCTTT
CTCTACGGCTACGATCCGGCCAGGTCGGCGCCGAAGCCAACTATGCACGG
TCCTGGCGGCGATGAGGAGAAGCTACTGCCGCGCGTCTAGAAGCTTTCTA
GACCAT
BS16536.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 1074 | CG2675-PC | 1..1074 | 17..1090 | 5265 | 99.3 | Plus |
Csat-RA | 1074 | CG2675-PA | 1..1074 | 17..1090 | 5265 | 99.3 | Plus |
Csat-RB | 1107 | CG2675-PB | 50..1107 | 33..1090 | 5185 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-RC | 2120 | CG2675-RC | 332..1406 | 16..1090 | 5270 | 99.3 | Plus |
Csat-RA | 2013 | CG2675-RA | 225..1299 | 16..1090 | 5270 | 99.3 | Plus |
Csat-RB | 2110 | CG2675-RB | 339..1396 | 33..1090 | 5185 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2701838..2702776 | 1090..152 | 4590 | 99.3 | Minus |
X | 23542271 | X | 2703288..2703407 | 152..33 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:20 has no hits.
BS16536.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:50 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 1..1074 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:03:03 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 251..1332 | 10..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:53 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 226..1299 | 17..1090 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:50 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 251..1332 | 10..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:00 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Csat-RA | 226..1299 | 17..1090 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:00 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2701838..2702775 | 153..1090 | 99 | <- | Minus |
X | 2703288..2703407 | 33..152 | 100 | <- | Minus |
X | 2703505..2703520 | 17..32 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:53 Download gff for
BS16536.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2597538..2597553 | 17..32 | 100 | | Minus |
arm_X | 2595871..2596808 | 153..1090 | 99 | <- | Minus |
arm_X | 2597321..2597440 | 33..152 | 100 | <- | Minus |
BS16536.pep Sequence
Translation from 16 to 1089
> BS16536.pep
MNSIHMNANTLKYISLLTLTLQNAILGLSMRYARTRPGDIFLSSTAVLMA
EFAKLITCLFLVFNEEGKDAQKFVRSLHKTIIANPMDTLKVCVPSLVYIV
QNNLLYVSASHLDAATYQVTYQLKILTTAMFAVVILRRKLLNTQWGALLL
LVMGIVLVQLAQTEGPTSGSAGGAAAAATAASSGGAPEQNRMLGLWAALG
ACFLSGFAGIYFEKILKGAEISVWMRNVQLSLLSIPFGLLTCFVNDGSRI
FDQGFFKGYDLFVWYLVLLQAGGGLIVAVVVKYADNILKGFATSLAIIIS
CVASIYIFDFNLTLQFSFGAGLVIASIFLYGYDPARSAPKPTMHGPGGDE
EKLLPRV*
BS16536.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Csat-PC | 357 | CG2675-PC | 1..357 | 1..357 | 1799 | 100 | Plus |
Csat-PA | 357 | CG2675-PA | 1..357 | 1..357 | 1799 | 100 | Plus |
Csat-PB | 368 | CG2675-PB | 17..368 | 6..357 | 1768 | 99.7 | Plus |
CG14040-PA | 388 | CG14040-PA | 48..349 | 45..334 | 229 | 25.9 | Plus |