Clone Sequence Records
BS16540.3prime Sequence
264 bp (264 high quality bases) assembled on 2007-05-15
> BS16540.3prime
ATGGTCTAGAAAGCTTCTAATTTATGCTGACCTCTGGAATGCCTTTTAAT
TGCCCACCCAGCTGTTCGATGTTTTGGTGCTCGGTTTGCTGTTCAGGTTC
TGTCAGAGGCCACAGACATGGGAAACTGAGTGGAAACATCTCAAGGACTG
TCAATCGCAACTGGAGGGTCTTATGCAGATTTCCGTTTGACTTTGGCCTG
CCTTTTGCGCACGCAAAGCCAAGTGTTGACCTCAGTTTCGCTGCTGTCAT
GTCGACTGATAACT
BS16540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30121-PA | 234 | CG30121-RA | 1..234 | 250..17 | 1170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 21:08:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740392..18740625 | 17..250 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:08:34 has no hits.
BS16540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:09 Download gff for
BS16540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-PA | 1..234 | 17..250 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:18 Download gff for
BS16540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:18 Download gff for
BS16540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:48 Download gff for
BS16540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:48 Download gff for
BS16540.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Plus |
BS16540.5prime Sequence
264 bp (264 high quality bases) assembled on 2007-05-15
> BS16540.5prime
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATTAG
AAGCTTTCTAGACC
BS16540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30121-PA | 234 | CG30121-RA | 1..234 | 17..250 | 1170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:06:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740392..18740625 | 250..17 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:06:03 has no hits.
BS16540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:26 Download gff for
BS16540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-PA | 1..234 | 17..250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:15 Download gff for
BS16540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:15 Download gff for
BS16540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:40 Download gff for
BS16540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:40 Download gff for
BS16540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Minus |
BS16540.complete Sequence
266 bp assembled on 2007-05-07
GenBank Submission: FJ638164
> BS16540.complete
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATTAG
AAGCTTTCTAGACCAT
BS16540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 08:06:53 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 08:06:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18740392..18740625 | 250..17 | 1170 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:06:52 has no hits.
BS16540.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:12 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 805..1038 | 17..250 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:30 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30121-RA | 805..1038 | 17..250 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:16 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:16 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18740392..18740625 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:05 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:05 Download gff for
BS16540.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14627897..14628130 | 17..250 | 100 | | Minus |
BS16540.pep Sequence
Translation from 16 to 249
> BS16540.pep
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSIN*
Sequence BS16540.pep has no blast hits.