Clone BS16540 Report

Search the DGRC for BS16540

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG30121-RA
Protein status:BS16540.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16540.3prime Sequence

264 bp (264 high quality bases) assembled on 2007-05-15

> BS16540.3prime
ATGGTCTAGAAAGCTTCTAATTTATGCTGACCTCTGGAATGCCTTTTAAT
TGCCCACCCAGCTGTTCGATGTTTTGGTGCTCGGTTTGCTGTTCAGGTTC
TGTCAGAGGCCACAGACATGGGAAACTGAGTGGAAACATCTCAAGGACTG
TCAATCGCAACTGGAGGGTCTTATGCAGATTTCCGTTTGACTTTGGCCTG
CCTTTTGCGCACGCAAAGCCAAGTGTTGACCTCAGTTTCGCTGCTGTCAT
GTCGACTGATAACT

BS16540.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30121-PA 234 CG30121-RA 1..234 250..17 1170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-04 21:08:36 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740392..18740625 17..250 1170 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:08:34 has no hits.

BS16540.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:09 Download gff for BS16540.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30121-PA 1..234 17..250 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:18 Download gff for BS16540.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:18 Download gff for BS16540.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:48 Download gff for BS16540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:29:48 Download gff for BS16540.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Plus

BS16540.5prime Sequence

264 bp (264 high quality bases) assembled on 2007-05-15

> BS16540.5prime
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATTAG
AAGCTTTCTAGACC

BS16540.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG30121-PA 234 CG30121-RA 1..234 17..250 1170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 16:06:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740392..18740625 250..17 1170 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:06:03 has no hits.

BS16540.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:26 Download gff for BS16540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30121-PA 1..234 17..250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:15 Download gff for BS16540.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:28:15 Download gff for BS16540.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:40 Download gff for BS16540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:36:40 Download gff for BS16540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Minus

BS16540.complete Sequence

266 bp assembled on 2007-05-07

GenBank Submission: FJ638164

> BS16540.complete
GAAGTTATCAGTCGACATGACAGCAGCGAAACTGAGGTCAACACTTGGCT
TTGCGTGCGCAAAAGGCAGGCCAAAGTCAAACGGAAATCTGCATAAGACC
CTCCAGTTGCGATTGACAGTCCTTGAGATGTTTCCACTCAGTTTCCCATG
TCTGTGGCCTCTGACAGAACCTGAACAGCAAACCGAGCACCAAAACATCG
AACAGCTGGGTGGGCAATTAAAAGGCATTCCAGAGGTCAGCATAAATTAG
AAGCTTTCTAGACCAT

BS16540.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-27 08:06:53 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-27 08:06:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18740392..18740625 250..17 1170 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:06:52 has no hits.

BS16540.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:12 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG30121-RA 805..1038 17..250 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:30 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
CG30121-RA 805..1038 17..250 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:16 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:11:16 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18740392..18740625 17..250 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:05 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:08:05 Download gff for BS16540.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14627897..14628130 17..250 100   Minus

BS16540.pep Sequence

Translation from 16 to 249

> BS16540.pep
MTAAKLRSTLGFACAKGRPKSNGNLHKTLQLRLTVLEMFPLSFPCLWPLT
EPEQQTEHQNIEQLGGQLKGIPEVSIN*
Sequence BS16540.pep has no blast hits.