Clone Sequence Records
BS16546.complete Sequence
2375 bp assembled on 2009-12-07
GenBank Submission: KX803868
> BS16546.complete
GAAGTTATCAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGT
TTGCCATCACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTC
AATTTGGTGTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCG
CGCAAGGAACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCC
TCTGGTTGATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAG
GCTCCATTCAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACAC
GATAAACTGGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGC
TATCGATCTGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTAC
AAGGGCTGGATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCC
CACCATGTTGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAAC
CGGGTCTGTACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCC
GTTAAAGACACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGA
TGATGAGAACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGA
CCATCGGCAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCC
ACCAACTACGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCG
CAGTCCCCTCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCA
TGAACCTCACCGACAAACAGGCGGCGCGTGCGGCCAATGTGATTTCCCTG
CTTCTCAACTTCCGTCGACTTATCGAGCACCAGGAACTGCAGCCTATCAT
GGTTCAGGGCATGATTCCTCTGTGCTCCTGGCAGTATGAACGTACCTTCA
ACACAGCACGCGTGCCAGGCCTGGAAACCGATCGTATCATCCACTACAGG
GACTCCAATCACATTGTGGTTCTCCACAAGGGCTGCTACTACAAGATGCT
CATCTACTACAAGGGTCGCATCCTGCGCCCATGCGAATTGCAAGTGCAAA
TTGAGGAAATCCTGAAGGGCAAAGCAACTCCCGTGGAAGGTGAGGAGCAC
TTGGCTGCCCTGACCGCCTGGAATCGCTCCAAGTGGGCGGAAGCTCGCAA
CACATTCTTCTCGTGGGGAGTCAATCAAACCTCTCTGCGCACCATCGAGT
CGGCCGCTTTTGTGCTCTCCCTGGATGATGAGCCCTTCGAGTTCGATTTG
GCGCGACCGGAATTGCTGGACAACTTTGGCAAGAAGCTGCTGCACGGCAA
TGGCTACAACCGCTGGTTTGACAAGTGTTTCACTGTCTGTGTGGGCACCA
ATGGTCGCGTTGGCTTCAATGCCGAACACACCTGGGCCGATGCACCGGTT
TTGGGACACCTGTGGGAGTATATATTTGGTGATGATATTTATGGATATGA
CGAAACGGGTAATACAAAGGGCACCCCGGCGTTCCAGCCACCCACGCCCA
CTAGGCTCACTTGGGATCTTAAACCATGCCTGGCGCAGATCGAAGAGGCC
ACCATCGATGTGACGAAGCTTATCAACGAGGTCAATCTGCGCATCCTGGT
GCACCAGGATTACGGCAAGGGCTTTATGAAGAAGTGCCGCATCTCACCAG
ATGCCTACATACAAATGGCCCTGCAGTTGGCCTACTACCGAGATGCCGGT
CGCTTCTCGTTGACATATGAGGCTTCAATGACCCGTCTGTTCCGCGAAGG
AAGAACTGAGACAGTGCGTCCGTGCACCATTGAGTCATCCGCCTGGGTCA
AGGCCATGCAGAACCCAAATACAACCAACGATGAGCGTGTGAAGATGATG
CAGGCTGCCTGCGATCGTCACCAGTTGGGCTACCAGGATGCCATGTGCGG
TCGTGGCATCGACAGGCATCTGTTCTGCCTGTATGTGGTCTCCAAGTACC
TGGAGGTGGATTCACCCTTCCTCAACGAGGTGCTCAGCGAACCCTGGCGC
CTCTCTACTAGTCAGACTCCGCACGGCCAGACGCCCAAGATGGACCTGAA
GAAGCATCCGAACTGCATCAGCGCTGGAGGCGGCTTTGGGCCCGTGGCCG
ATGATGGTTACGGTGTGTCGTACATTATTGCCGGAGAGAACCTGATATTC
TTCCATATCTCAGCGAAGACTACGTGCCAGCAAACGGATGTGCACCGCTT
CGCTCAGAACATATCGCAGGCTCTGTCAGACATTCGCAGCATGTTCGAGC
AGCACATGAAGGACCATCCGAAGCCCGCCAAATCACTCACAAACGGCAAA
TCCACATAAAAGCTTTCTAGACCAT
BS16546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:55:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RA | 2343 | CG12891-PA | 1..2343 | 17..2359 | 11715 | 100 | Plus |
| whd-RB | 2343 | CG12891-PB | 1..2343 | 17..2359 | 11715 | 100 | Plus |
| whd-RC | 2349 | CG12891-PC | 1..2349 | 17..2359 | 11275 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RA | 2882 | CG12891-RA | 250..2592 | 17..2359 | 11715 | 100 | Plus |
| whd-RB | 2901 | CG12891-RB | 269..2611 | 17..2359 | 11715 | 100 | Plus |
| whd-RC | 2888 | CG12891-RC | 250..2598 | 17..2359 | 11275 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:55:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472475..10473213 | 895..157 | 3695 | 100 | Minus |
| 2R | 25286936 | 2R | 10470368..10470750 | 1876..1494 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 10469945..10470305 | 2237..1877 | 1805 | 100 | Minus |
| 2R | 25286936 | 2R | 10471617..10471956 | 1435..1096 | 1700 | 100 | Minus |
| 2R | 25286936 | 2R | 10472015..10472215 | 1096..896 | 1005 | 100 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 157..17 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 10469763..10469886 | 2359..2236 | 620 | 100 | Minus |
| 2R | 25286936 | 2R | 10471214..10471274 | 1494..1434 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:55:43 has no hits.
BS16546.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:15 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CPTI-RA | 251..2591 | 17..2357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:30 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 269..2609 | 17..2357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:08:24 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CPTI-RA | 251..2591 | 17..2357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:00 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 269..2609 | 17..2357 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:00 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10472016..10472215 | 896..1095 | 100 | <- | Minus |
| 2R | 10469765..10469885 | 2237..2357 | 100 | <- | Minus |
| 2R | 10469946..10470305 | 1877..2236 | 100 | <- | Minus |
| 2R | 10470368..10470749 | 1495..1876 | 100 | <- | Minus |
| 2R | 10471214..10471273 | 1435..1494 | 100 | <- | Minus |
| 2R | 10471618..10471956 | 1096..1434 | 100 | <- | Minus |
| 2R | 10472475..10473212 | 158..895 | 100 | <- | Minus |
| 2R | 10473269..10473409 | 17..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:30 Download gff for
BS16546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6359521..6359720 | 896..1095 | 100 | <- | Minus |
| arm_2R | 6357270..6357390 | 2237..2357 | 100 | <- | Minus |
| arm_2R | 6357451..6357810 | 1877..2236 | 100 | <- | Minus |
| arm_2R | 6357873..6358254 | 1495..1876 | 100 | <- | Minus |
| arm_2R | 6358719..6358778 | 1435..1494 | 100 | <- | Minus |
| arm_2R | 6359123..6359461 | 1096..1434 | 100 | <- | Minus |
| arm_2R | 6359980..6360717 | 158..895 | 100 | <- | Minus |
| arm_2R | 6360774..6360914 | 17..157 | 100 | | Minus |
BS16546.3prime Sequence
932 bp (829 high quality bases) assembled on 2007-05-15
> BS16546.3prime
ATGGTCTAGAAAGCTTTTATGTGGATTTGCCGTTTGTGAGTGATTTGGCG
GGCTTCGGATGGTCCTTCATGTGCTGCTCGAACATGCTGCGAATGTCTGA
CAGAGCCTGCGATATGTTCTGAGCGAAGCGGTGCACATCCGTTTGCTGGC
ACGTAGTCTTCGCTGAGATATGGAAGAATATCAGGTTCTCTCCGGCAATA
ATGTACGACACACCGTAACCATCATCGGCCACGGGCCCAAAGCCGCCTCC
AGCGCTGATGCAGTTCGGATGCTTCTTCAGGTCCATCTTGGGCGTCTGGC
CGTGCGGAGTCTGACTAGTAGAGAGGCGCCAGGGTTCGCTGAGCACCTCG
TTGAGGAAGGGTGAATCCACCTCCAGGTACTTGGAGACCACATACAGGCA
GAACAGATGCCTGTCGATGCCACGACCGCACATGGCATCCTGGTAGCCCA
ACTGGTGACGATCGCAGGCAGCCTGCATCATCTTCACACGCTCATCGTTG
GTTGTATTTGGGTTCTGCATGGCCTTGACCCAGGCGGATGACTCAATGGT
GCACGGACGCACTGTCTCAGTTCTTCCTTCGCGGAACAGACGGGTCATTG
AAGCCTCATATGTCAACGAGAAGCGACCGGCATCTCGGTAGTAGGCCAAC
TGCAGGGCCATTTGTATGTAGGCATCTGGTGAGATGCGGCACTTCTTCAT
AAAGCCCTTGCCGTAATCCTGGTGCACCAGGATGCGCAGATTGACCTCGT
TGATAAGCTTCGTCACATCGATGGTGGCCTCTTCGATCTGCGCCAGGCAT
GGTTTAAGATCCCAAGTGAGCCTAGTGGGCGTGGGTGGCTGGAACGCCGG
GGTGCCCTTTGTATACCCGTTTCGTCATATCCATAAATATCATCACCAAA
TATATACTCCCACAGGTGTCCCAAAACCGGTG
BS16546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12891-PB | 2343 | CPTI-RB | 1496..2343 | 864..17 | 4240 | 100 | Minus |
| CG12891-PA | 2343 | CPTI-RA | 1496..2343 | 864..17 | 4240 | 100 | Minus |
| CG12891-PB | 2343 | CPTI-RB | 1427..1495 | 932..864 | 345 | 100 | Minus |
| CG12891-PA | 2343 | CPTI-RA | 1427..1495 | 932..864 | 345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RA | 2882 | CG12891-RA | 1676..2592 | 932..17 | 4560 | 99.9 | Minus |
| whd-RB | 2901 | CG12891-RB | 1695..2611 | 932..17 | 4560 | 99.9 | Minus |
| whd-RC | 2888 | CG12891-RC | 1732..2598 | 882..17 | 4310 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10470368..10470750 | 500..881 | 1865 | 99.7 | Plus |
| 2R | 25286936 | 2R | 10469945..10470305 | 139..499 | 1805 | 100 | Plus |
| 2R | 25286936 | 2R | 10469763..10469886 | 17..140 | 620 | 100 | Plus |
| 2R | 25286936 | 2R | 10471214..10471265 | 881..932 | 260 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 10:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1051..1088 | 49..13 | 124 | 84.2 | Minus |
BS16546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:57:13 Download gff for
BS16546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12891-PA | 1427..2343 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:49:40 Download gff for
BS16546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 1695..2618 | 10..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:56 Download gff for
BS16546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RB | 1695..2618 | 10..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:56 Download gff for
BS16546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10469755..10469885 | 10..139 | 96 | <- | Plus |
| 2R | 10469946..10470305 | 140..499 | 100 | <- | Plus |
| 2R | 10470368..10470749 | 500..880 | 99 | <- | Plus |
| 2R | 10471214..10471265 | 881..932 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:49:40 Download gff for
BS16546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6357260..6357390 | 10..139 | 96 | <- | Plus |
| arm_2R | 6357451..6357810 | 140..499 | 100 | <- | Plus |
| arm_2R | 6357873..6358254 | 500..880 | 99 | <- | Plus |
| arm_2R | 6358719..6358770 | 881..932 | 100 | | Plus |
BS16546.5prime Sequence
811 bp (810 high quality bases) assembled on 2007-05-15
> BS16546.5prime
GAAGTTATCAGTCGACATGGCCGAAGCCCATGCCGCCGTGGCATTCTCGT
TTGCCATCACCCATGAGGGCTTCGACATCAACTATGACCACGAGGTGCTC
AATTTGGTGTGGAACTCAGGAGTTCGTTCCTGGAAAAAGCGATTGGCTCG
CGCAAGGAACGGCGTACGCAATGGCGTCTATCCGGCTCACATCCAGAGCC
TCTGGTTGATCTCAGCAATAGCGCTGGGTCTACACTTTGCGGGCTACCAG
GCTCCATTCAATCTGACCAACCGTATACTGGTGCACCTGCCTTCCAACAC
GATAAACTGGCAGGTTACCGCCTGCTTTTTGGCCGCTCTGGTGGTCTGGC
TATCGATCTGTTTCACCATGAGATACACTCTCAAGCTGCTGCTCATGTAC
AAGGGCTGGATGTACGAGTCCAGAGCTCCCGGTAGTCGTGTCTCTCTGCC
CACCATGTTGTGGGTGGCAGTGGTGCGGGTTCTATCTAGTTGGAACAAAC
CGGGTCTGTACAGCTTCCAGGGTTCTCTGCCCAGGCTGCCACTGCCCTCC
GTTAAAGACACGATGACCAGGTACTTGCGCAGTGTTCGACCGCTGCTTGA
TGATGAGAACTACACGCGCATGGAGCGCCTGGCCAAAGAATTCGAACAGA
CCATCGGCAAGAAGCTGCAGTGGTACCTCATCCTCAAGAGCTGGTGGTCC
ACCAACTACGTGTCGGATTGGTGGGAGGAGTACGTCTACCTTCGTGGTCG
CAGTCCCCTCTGCGTGAACAGCAACTTCTACGGCACGGATGCGATCTTCA
TGAACCTCACC
BS16546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12891-PB | 2343 | CPTI-RB | 1..795 | 17..811 | 3975 | 100 | Plus |
| CG12891-PA | 2343 | CPTI-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-RC | 2888 | CG12891-RC | 250..1044 | 17..811 | 3975 | 100 | Plus |
| whd-RA | 2882 | CG12891-RA | 250..1044 | 17..811 | 3975 | 100 | Plus |
| whd-RD | 2907 | CG12891-RD | 269..1063 | 17..811 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10472559..10473213 | 811..157 | 3275 | 100 | Minus |
| 2R | 25286936 | 2R | 10473269..10473409 | 157..17 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:01:01 has no hits.
BS16546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:51:29 Download gff for
BS16546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12891-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:23 Download gff for
BS16546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1063 | 9..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:47:44 Download gff for
BS16546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| whd-RD | 264..1063 | 9..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:47:44 Download gff for
BS16546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10472559..10473212 | 158..811 | 100 | <- | Minus |
| 2R | 10473269..10473414 | 9..157 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:23 Download gff for
BS16546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6360774..6360919 | 9..157 | 97 | | Minus |
| arm_2R | 6360064..6360717 | 158..811 | 100 | <- | Minus |
BS16546.pep Sequence
Translation from 16 to 2358
> BS16546.pep
MAEAHAAVAFSFAITHEGFDINYDHEVLNLVWNSGVRSWKKRLARARNGV
RNGVYPAHIQSLWLISAIALGLHFAGYQAPFNLTNRILVHLPSNTINWQV
TACFLAALVVWLSICFTMRYTLKLLLMYKGWMYESRAPGSRVSLPTMLWV
AVVRVLSSWNKPGLYSFQGSLPRLPLPSVKDTMTRYLRSVRPLLDDENYT
RMERLAKEFEQTIGKKLQWYLILKSWWSTNYVSDWWEEYVYLRGRSPLCV
NSNFYGTDAIFMNLTDKQAARAANVISLLLNFRRLIEHQELQPIMVQGMI
PLCSWQYERTFNTARVPGLETDRIIHYRDSNHIVVLHKGCYYKMLIYYKG
RILRPCELQVQIEEILKGKATPVEGEEHLAALTAWNRSKWAEARNTFFSW
GVNQTSLRTIESAAFVLSLDDEPFEFDLARPELLDNFGKKLLHGNGYNRW
FDKCFTVCVGTNGRVGFNAEHTWADAPVLGHLWEYIFGDDIYGYDETGNT
KGTPAFQPPTPTRLTWDLKPCLAQIEEATIDVTKLINEVNLRILVHQDYG
KGFMKKCRISPDAYIQMALQLAYYRDAGRFSLTYEASMTRLFREGRTETV
RPCTIESSAWVKAMQNPNTTNDERVKMMQAACDRHQLGYQDAMCGRGIDR
HLFCLYVVSKYLEVDSPFLNEVLSEPWRLSTSQTPHGQTPKMDLKKHPNC
ISAGGGFGPVADDGYGVSYIIAGENLIFFHISAKTTCQQTDVHRFAQNIS
QALSDIRSMFEQHMKDHPKPAKSLTNGKST*
BS16546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| whd-PA | 780 | CG12891-PA | 1..780 | 1..780 | 4194 | 100 | Plus |
| whd-PB | 780 | CG12891-PB | 1..780 | 1..780 | 4194 | 100 | Plus |
| whd-PC | 782 | CG12891-PC | 1..782 | 1..780 | 4120 | 98.2 | Plus |
| whd-PD | 782 | CG12891-PD | 1..782 | 1..780 | 4120 | 98.2 | Plus |
| CG1041-PE | 638 | CG1041-PE | 47..630 | 168..763 | 654 | 31.7 | Plus |
