Clone Sequence Records
BS16549.complete Sequence
2408 bp assembled on 2009-12-07
GenBank Submission: KX803911
> BS16549.complete
GAAGTTATCAGTCGACATGGAATGCGGTTCACACAGCGGACACCGCCCAA
TTCCGATTTGGCTTTCGAGCTGCCTCGTGGCCATGTGCTTGGGCCTTCCG
CTAGGAGCAGCTGTCCCCCAGGAAGCACCTGCCTACTACTACGTTGGTTG
CTACACGGCACGAACGGATCTTCTCCATGAATCGGTGTACGCCAAGACAC
CGCAGACCTGCATCGAGATCTGCGAGCATCAGGGTCACCACTATGCCGTG
CTGGCCTCCGAGAAGTGCTTCTGTGCAAATGTCCTGGAGCCGCAGGAGCA
ACAGGATGAACAGCTCTGCAACACTCGCTGCCTGGCCAACAAAGCGCAGT
ATTGTGGCGGAGTTGGTGTGCACTCGTACTACTCCACCATACTGACCAAA
CAACCGGGTCCGCATCATCTAAGAATCTCGAACAAAACGGAGAACAGCCT
GACCCTTAGCTGGAATGCGTACGAGGCGAGGAAACTACTCCTGGCCGGCG
GCGCGGAGGCAGTGCTTCCCAACCAGCTACTGGACAACTTCCTGATCAAA
GCTCAGGTCCTGAAGACCTACTCCTCGTTGCCCGCCTTCCCGCAGCCTGA
GTTTATGGTGCAGAGCACGGAAACGCAGTTTGAACTCACAGACTTGCATC
CCGCCACGCTGTACAACATATCCGTGAGAGCCATGTGCAAGGATGCCCAA
GTAGGTCAATCTGAATGCGGACAGGCCTCGATAGAAGCCACCACGGAGGT
GGGCCTTCCAAGTCCCGTGCCAGCACAGCCGAAAATCCTCAGCCGGACTG
ACCGCACTGTAACCATCGAGTTGTCGCCCATTCGGAATGACAATGGACCG
CTGAGCAAACTGCTCGTCATCGTGGAATACGTGGACAACGCCCTGAGTCA
GCCATTCGATGCCCAGCTCCTGGGCAGCTGGCAGCAGGCTCAACAAGATG
GAGTGCCCTACTACATAGCCGCCGAATTGGACTACGATCGACCGGAGGAC
AATCGCACCCGGCGCTTTGTGGTCGGCGATGGCAAGCGTTACGGACGATT
TACCAATAAGCCGTTGGATCAACCAGATGCACATGTCCACATCAGTCTCG
GATTGGTGAGCACACTGGAGGGCGTTACCAAGACGATGTACAGTCGTGGA
ACTCACGACCAGCATGTGACATCCCTAGACGACTTTAGTTACGCCACCTT
TGAGAAGGGTCAATCCTCGGTGGTTGCCCTAGCTGTCACCTGTGTGATCT
TCGGCTCCTGCCTCCTGCTCAGTCTTATTGCCTACTTCTATCTGCGCTAC
AAGACCTGCCGCGGGCGACGATTGACTGGTGGCAATACGCACGAGATGAC
GCTGCAAACGCCCATAATCGAGCGGGAAAATAACGGATACCTTGTGGAGG
ACGATCCACTGCCACACTCGCCGGAAAACTTCAAGCAGCAGTTGCAACAG
TTGGTGGAAGGATACGAACGGATACCAAGGAATGCACTACGACTAAATGT
GAACGATGTGATCGGAGACGGACGCTTTGGTGAGATTATAACCGGAAAGG
TTTCCACAAACGATTTTGCCAGAGATTGCACCCTGCACGTGCTCTGTCTG
GACGATCTGAATGGTACTACACAGGCACAGTTGCTGAGAGAACTACGTCA
GTTGTCTCAATTGAAGCGCCAGGAGCATTTGCTAGATTTCTATGGAGTAT
CAGCAAGTCCCGATTGGTTCTACCTAATCTTCGAGCAGCAACGCATGAGT
CTAAAGAGAAAACTGGTGGAGAGTCGCCTGATGGCACCGTCGCCACGCTT
GACTTCCCTCTCTGAGCAGCTAGTGCTGCAGTGGATCTACGAGCTTGCCA
GTGCCATGAATTATCTATCCAGCTGCCAGGTGGTGCATCGACAGCTCTGC
TCGCACAGCGTCTTCGTTACCAGCGATTTCAAGCTAAAACTGAGCGTCTT
TGGACCGCTGCCCTACATGAACATTGCTCGCCAGCAGCCAGACCACAACC
GGTGGCTGGCCCCGGAGGTGCTGCGCCATCAGCATCACCATTCCACCCGT
TCTGATGTCTGGTCCCTGGCCTGCGTGGCGTGGGAATGCTGTGCCCTTGG
CGGTACTCCCTATGCCAATGCAGTGGCAAGTAACCAACAGCTTCTAGAGG
CCATTCGGGCTGCAGTGCGTCCGGCGCAGCCAGCCTACGTCTACGGGGAT
CTCTACCAGCTGCTGCTCAACTGCTGGCAGCTGGAGCCGAGCGAGCGGAG
CAGCTGTGAGGACGTGGCCTTCGGAGTACGTCAGCTGATGACCTCACCGC
GTCATGCCCTCAGCTTTGATCGAGTGGCCGGCGGACTAGACACCCTGCCT
CCGTACCTGCCGCAACTGGAAGCCGTTGCTACGATGGGCTGAAAGCTTTC
TAGACCAT
BS16549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2376 | CG31127-PA | 1..2376 | 17..2392 | 11880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 209..2585 | 16..2392 | 11885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24627376..24628663 | 2392..1105 | 6440 | 100 | Minus |
| 3R | 32079331 | 3R | 24629133..24629867 | 750..16 | 3675 | 100 | Minus |
| 3R | 32079331 | 3R | 24628711..24629074 | 1110..747 | 1820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:42:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 422..471 | 1973..2020 | 119 | 74 | Plus |
BS16549.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:03 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1..2376 | 17..2392 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:43 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 223..2597 | 17..2391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:33 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 210..2584 | 17..2391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:36:44 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 223..2597 | 17..2391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:06 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 210..2584 | 17..2391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:06 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24627377..24628662 | 1106..2391 | 100 | <- | Minus |
| 3R | 24628716..24629072 | 749..1105 | 100 | <- | Minus |
| 3R | 24629135..24629866 | 17..748 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:33 Download gff for
BS16549.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20453099..20454384 | 1106..2391 | 100 | <- | Minus |
| arm_3R | 20454438..20454794 | 749..1105 | 100 | <- | Minus |
| arm_3R | 20454857..20455588 | 17..748 | 100 | | Minus |
BS16549.3prime Sequence
839 bp (820 high quality bases) assembled on 2007-05-15
> BS16549.3prime
ATGGTCTAGAAAGCTTTCAGCCCATCGTAGCAACGGCTTCCAGTTGCGGC
AGGTACGGAGGCAGGGTGTCTAGTCCGCCGGCCACTCGATCAAAGCTGAG
GGCATGACGCGGTGAGGTCATCAGCTGACGTACTCCGAAGGCCACGTCCT
CACAGCTGCTCCGCTCGCTCGGCTCCAGCTGCCAGCAGTTGAGCAGCAGC
TGGTAGAGATCCCCGTAGACGTAGGCTGGCTGCGCCGGACGCACTGCAGC
CCGAATGGCCTCTAGAAGCTGTTGGTTACTTGCCACTGCATTGGCATAGG
GAGTACCGCCAAGGGCACAGCATTCCCACGCCACGCAGGCCAGGGACCAG
ACATCAGAACGGGTGGAATGGTGATGCTGATGGCGCAGCACCTCCGGGGC
CAGCCACCGGTTGTGGTCTGGCTGCTGGCGAGCAATGTTCATGTAGGGCA
GCGGTCCAAAGACGCTCAGTTTTAGCTTGAAATCGCTGGTAACGAAGACG
CTGTGCGAGCAGAGCTGTCGATGCACCACCTGGCAGCTGGATAGATAATT
CATGGCACTGGCAAGCTCGTAGATCCACTGCAGCACTAGCTGCTCAGAGA
GGGAAGTCAAGCGTGGCGACGGTGCCATCAGGCGACTCTCCACCAGTTTT
CTCTTTAGACTCATGCGTTGCTGCTCGAAGATTAGGTAGAACCAATCGGG
ACTTGCTGATACTCCATAGAAATCTAGCAAATGCTCCTGGCGCTTCAATT
GAGACAACTGACGTAGTTCTCTCAGCAACTGTGCCTGTGTAGTACCATTC
AGATCGTCCAGACAGAGCACGTGCAGGGTGCAATCTCTG
BS16549.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31127-PA | 2376 | Wsck-RA | 1554..2376 | 839..17 | 4115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 1763..2585 | 839..17 | 4115 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24627376..24628198 | 17..839 | 4115 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 04:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT1 | 769 | Dbuz\BuT1 BUT1 769bp | 422..471 | 436..389 | 119 | 74 | Minus |
BS16549.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:11 Download gff for
BS16549.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31127-PA | 1554..2376 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:30:40 Download gff for
BS16549.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1763..2585 | 17..839 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:08:08 Download gff for
BS16549.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 1763..2585 | 17..839 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:08:08 Download gff for
BS16549.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24627376..24628198 | 17..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:30:40 Download gff for
BS16549.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20453098..20453920 | 17..839 | 100 | | Plus |
BS16549.5prime Sequence
932 bp (778 high quality bases) assembled on 2007-05-15
> BS16549.5prime
GAAGTTATCAGTCGACATGGAATGCGGTTCACACAGCGGACACCGCCCAA
TTCCGATTTGGCTTTCGAGCTGCCTCGTGGCCATGTGCTTGGGCCTTCCG
CTAGGAGCAGCTGTCCCCCAGGAAGCACCTGCCTACTACTACGTTGGTTG
CTACACGGCACGAACGGATCTTCTCCATGAATCGGTGTACGCCAAGACAC
CGCAGACCTGCATCGAGATCTGCGAGCATCAGGGTCACCACTATGCCGTG
CTGGCCTCCGAGAAGTGCTTCTGTGCAAATGTCCTGGAGCCGCAGGAGCA
ACAGGATGAACAGCTCTGCAACACTCGCTGCCTGGCCAACAAAGCGCAGT
ATTGTGGCGGAGTTGGTGTGCACTCGTACTACTCCACCATACTGACCAAA
CAACCGGGTCCGCATCATCTAAGAATCTCGAACAAAACGGAGAACAGCCT
GACCCTTAGCTGGAATGCGTACGAGGCGAGGAAACTACTCCTGGCCGGCG
GCGCGGAGGCAGTGCTTCCCAACCAGCTACTGGACAACTTCCTGATCAAA
GCTCAGGTCCTGAAGACCTACTCCTCGTTGCCCGCCTTCCCGCAGCCTGA
GTTTATGGTGCAGAGCACGGAAACGCAGTTTGAACTCACAGACTTGCATC
CCGCCACGCTGTACAACATATCCGTGAGAGCCATGTGCAAGGATGCCCAA
GTAGGTCAATCTGAATGCGGACAGGCCTCGATAGAAGCCACCACGGAGGT
GGGCCTTCCAAGTCCCGTGCCAGCACAGCCGAAAATCCTCAGCCGGACTG
ACCGCACTGTAACCATCGAGTTGTCGCCCATTCGGAATGACAATGGACCG
CTGAGCAAACTGCTCGTCATCGTGGAATACGTGGACAACGCCCTGAGTCA
GCCATTCGATGCCCAGCTCCTGGGCAGCTGGC
BS16549.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31127-PA | 2376 | Wsck-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 21:54:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 209..1125 | 16..932 | 4585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 21:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24629133..24629867 | 750..16 | 3675 | 100 | Minus |
| 3R | 32079331 | 3R | 24628889..24629074 | 932..747 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 21:54:02 has no hits.
BS16549.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:43 Download gff for
BS16549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31127-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:05 Download gff for
BS16549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..1125 | 10..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:40:10 Download gff for
BS16549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..1125 | 10..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:40:10 Download gff for
BS16549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24628889..24629072 | 749..932 | 100 | <- | Minus |
| 3R | 24629135..24629870 | 10..748 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:05 Download gff for
BS16549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20454611..20454794 | 749..932 | 100 | <- | Minus |
| arm_3R | 20454857..20455592 | 10..748 | 99 | | Minus |
BS16549.pep Sequence
Translation from 16 to 2391
> BS16549.pep
MECGSHSGHRPIPIWLSSCLVAMCLGLPLGAAVPQEAPAYYYVGCYTART
DLLHESVYAKTPQTCIEICEHQGHHYAVLASEKCFCANVLEPQEQQDEQL
CNTRCLANKAQYCGGVGVHSYYSTILTKQPGPHHLRISNKTENSLTLSWN
AYEARKLLLAGGAEAVLPNQLLDNFLIKAQVLKTYSSLPAFPQPEFMVQS
TETQFELTDLHPATLYNISVRAMCKDAQVGQSECGQASIEATTEVGLPSP
VPAQPKILSRTDRTVTIELSPIRNDNGPLSKLLVIVEYVDNALSQPFDAQ
LLGSWQQAQQDGVPYYIAAELDYDRPEDNRTRRFVVGDGKRYGRFTNKPL
DQPDAHVHISLGLVSTLEGVTKTMYSRGTHDQHVTSLDDFSYATFEKGQS
SVVALAVTCVIFGSCLLLSLIAYFYLRYKTCRGRRLTGGNTHEMTLQTPI
IERENNGYLVEDDPLPHSPENFKQQLQQLVEGYERIPRNALRLNVNDVIG
DGRFGEIITGKVSTNDFARDCTLHVLCLDDLNGTTQAQLLRELRQLSQLK
RQEHLLDFYGVSASPDWFYLIFEQQRMSLKRKLVESRLMAPSPRLTSLSE
QLVLQWIYELASAMNYLSSCQVVHRQLCSHSVFVTSDFKLKLSVFGPLPY
MNIARQQPDHNRWLAPEVLRHQHHHSTRSDVWSLACVAWECCALGGTPYA
NAVASNQQLLEAIRAAVRPAQPAYVYGDLYQLLLNCWQLEPSERSSCEDV
AFGVRQLMTSPRHALSFDRVAGGLDTLPPYLPQLEAVATMG*
BS16549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-PA | 791 | CG31127-PA | 1..791 | 1..791 | 4181 | 100 | Plus |
| htl-PC | 729 | CG7223-PC | 393..710 | 467..778 | 248 | 25.6 | Plus |
| htl-PA | 729 | CG7223-PA | 393..710 | 467..778 | 248 | 25.6 | Plus |
| htl-PB | 729 | CG7223-PB | 393..710 | 467..778 | 248 | 25.6 | Plus |
| sev-PA | 2554 | CG18085-PA | 2205..2473 | 489..746 | 208 | 27.9 | Plus |
