Clone Sequence Records
BS16556.complete Sequence
2819 bp assembled on 2009-12-07
GenBank Submission: KX804787
> BS16556.complete
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGCAAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCGATCGGATCATCTGGAGCGTCGTGAGGGCGGCGGATTTGAT
GCCAAGGAATACGATGAGTTCCCCGAACGATACATCTCCACCTTTAGCAC
GAAGATAGCTCCGTACGCATCGGTTATTGTTAACGGCATCTACTGGGCCG
TAGGCAGTCCCAAGTTGATCAGCATTCCGGATGCCAAGAATCTGCTACGT
CCGGCAAACACTCCCTGGCTGCCGACGAGCAAGGGTAGTCCGGCTTTGCC
ACATCGCATGCTGGCCATTTGCGACATTTCCGCTGATCCCGGTGGCTCCA
TTGAGTTTATGAACGAGTGCACCACCATCGACACTCCATTCTGCTTGTAC
GATGCGGACAGGAATAAGGATACCAAGAGCTTTAAGGGACCCGGAGTTTT
AGTCTGTTCGATTGATAATATGCCTACACAATTGCCCAGAGAATCGACGG
ATTTGTTTGGAGAGCTGTTGGCTCCTCATGTTCATGATATTATAAAGAGC
GATGCCAAGAAGCCGTTGGCAGAGGAGAACTTCTCATACCCCATTCAGTC
GGCTATTATCGCCAGCAACGGTCAGCTGACGGAGGGCTTCCAGTATATTC
AGGAGCTCCGAGAGTCGCAAAGCCACAGATCGCGCCACAAGATGGAGGGA
AGTTCGGAGTCTGACAAGAAGGTCTTGGTTCTGGGAGCTGGCATGGTGTC
CGCTCCACTCGTAGAGTGGCTTCATCGCGAAAAGGACGTCAGCATAACGG
TTTGCTCGCAGGTCAAGGAGGAAGCCGATCGCCTGGCTCAGCAGTATGCT
GGAGTGGACAGCGTCTATCTGGATGTGAACGAGAGCACTGGTCATCTGCA
GGAGCTGTGCGGCAGGGCAGATGTAGTAGTTTCCCTGCTGCCCTACAGTC
TCCATGGCATGGTAGCACGTTATTGCGTGGCAGAGGGCACCCACATGGTT
ACCGCAAGTTATCTGAACGACGAGATCTCCGGTTTGCACGAGGAGGCCAA
GGCCAAAGGTGTGACCATCATGAACGAGGTGGGCTTGGATCCTGGTATCG
ATCACCTTCTGGCACTGGAGTGCATCCACGAGGTGCAGGACAAGGGAGCC
GTTGTCGAGTCCTTCGTGAGCTATTGTGGCGGTCTGCCTGCACCGGAGCA
TTCCAATAATGCCCTAAGATATAAGTTCTCTTGGTCACCCAGGGGAGTAC
TTCTCAACACACTTTCCGCTGCAAAATATCTGAGTCAGGGACAAATTGTG
GAGATTTCTGGAGGTGGGGAACTCATGTCAAGTCCTCGCAGCTTGGATTT
CCTGCCAGGATTCGCCCTGGAGGGTTTCCCCAACAGGGATTCCACCAAAT
ACGGCAACCTTTACGGCTTAGGCAGGGATGTGCACACTTTGCTTCGTGGA
ACCATACGTTATAAGGGCTTTTCGGAATCGATTAAGCCTATGCAGCTCTT
GGGACTTATCGATCCGGAGCCACATGCATTGCTACATCCCAGTGGGCCGG
ATGTCACGTGGCGCCAGCTGGTGATCCATCTAATGGGCATGTCGGACTCG
ACCATCTTCTACGAGAACCTCAAGCAGAAGCTGACTGAGCGCATTGGAGA
TGTGGACGGCATCGAGAGCTTGGGTCTGCTGGATGATACTCCTGTGGTGA
AGCTCAACACTCCGCTGGATACGCTTAGTCACTATCTCTCGAAGAGACTT
GCCTTCGAGCGGGATGAACGCGACCTGGTGGTGCTGCGCCATGAAGTTGG
CATCCGTTGGCCCGATGGTCGTCGTGAGGAGCGTGGAATCAATTTTGTGG
TCTACGGACAGCCCCAGGGTCACTCCGCCATGGCGATGACTGTGGGCAAG
CCGGCTGCCATCGCAGCCAAAATGATCCTAGACGGTGAGATCCAGGAACG
CGGCGTCCTGCTGCCCTTCACTCCCGACATTTATCGTCCCATGCTGCAAC
GTCTACGCTCCGAGGGTCTGACTGCCACGGAAACCTCCAGATGGCTAAAT
TAAAAGCTTTCTAGACCAT
BS16556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LKR-RB | 2787 | CG7144-PB | 1..2787 | 17..2803 | 13830 | 99.7 | Plus |
LKR-RA | 2787 | CG7144-PA | 1..2787 | 17..2803 | 13830 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LKR-RB | 3495 | CG7144-RB | 124..2912 | 15..2803 | 13840 | 99.7 | Plus |
LKR-RA | 3264 | CG7144-RA | 124..2912 | 15..2803 | 13840 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7792175..7793331 | 2507..1351 | 5740 | 99.7 | Minus |
2L | 23513712 | 2L | 7793508..7794083 | 1352..777 | 2880 | 100 | Minus |
2L | 23513712 | 2L | 7794148..7794528 | 776..396 | 1905 | 100 | Minus |
2L | 23513712 | 2L | 7791936..7792116 | 2687..2507 | 905 | 100 | Minus |
2L | 23513712 | 2L | 7794592..7794771 | 397..218 | 855 | 98.3 | Minus |
2L | 23513712 | 2L | 7795509..7795657 | 221..73 | 730 | 99.3 | Minus |
2L | 23513712 | 2L | 7791758..7791877 | 2803..2684 | 585 | 99.2 | Minus |
2L | 23513712 | 2L | 7795775..7795836 | 76..15 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:16:51 has no hits.
BS16556.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:47 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7144-RA | 125..2909 | 17..2801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:27 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 126..2910 | 17..2801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:32 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7144-RA | 125..2909 | 17..2801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:01 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 126..2910 | 17..2801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:01 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7791760..7791876 | 2685..2801 | 99 | <- | Minus |
2L | 7791939..7792115 | 2508..2684 | 100 | <- | Minus |
2L | 7792175..7793330 | 1352..2507 | 99 | <- | Minus |
2L | 7793509..7794083 | 777..1351 | 100 | <- | Minus |
2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
2L | 7795775..7795834 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:27 Download gff for
BS16556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7791760..7791876 | 2685..2801 | 99 | <- | Minus |
arm_2L | 7791939..7792115 | 2508..2684 | 100 | <- | Minus |
arm_2L | 7792175..7793330 | 1352..2507 | 99 | <- | Minus |
arm_2L | 7793509..7794083 | 777..1351 | 100 | <- | Minus |
arm_2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
arm_2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
arm_2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
arm_2L | 7795775..7795834 | 17..76 | 100 | | Minus |
BS16556.3prime Sequence
836 bp (801 high quality bases) assembled on 2007-05-15
> BS16556.3prime
ATGGTCTAGAAAGCTTTTAATTTAGCCATCTGGAGGTTTCCGTGGCAGTC
AGACCCTCGGAGCGTAGACGTTGCAGCATGGGACGATAAATGTCGGGAGT
GAAGGGCAGCAGGACGCCGCGTTCCTGGATCTCACCGTCTAGGATCATTT
TGGCTGCGATGGCAGCCGGCTTGCCCACAGTCATCGCCATGGCGGAGTGA
CCCTGGGGCTGTCCGTAGACCACAAAATTGATTCCACGCTCCTCACGACG
ACCATCGGGCCAACGGATGCCAACTTCATGGCGCAGCACCACCAGGTCGC
GTTCATCCCGCTCGAAGGCAAGTCTCTTCGAGAGATAGTGACTAAGCGTA
TCCAGCGGAGTGTTGAGCTTCACCACAGGAGTATCATCCAGCAGACCCAA
GCTCTCGATGCCGTCCACATCTCCAATGCGCTCAGTCAGCTTCTGCTTGA
GGTTCTCGTAGAAGATGGTCGAGTCCGACATGCCCATTAGATGGATCACC
AGCTGGCGCCACGTGACATCCGGCCCACTGGGATGTAGCAATGCATGTGG
CTCCGGATCGATAAGTCCCAAGAGCTGCATAGGCTTAATCGATTCCGAAA
AGCCCTTATAACGTATGGTTCCACGAAGCAAAGTGTGCACATCCCTGCCT
AAGCCGTAAAGGTTGCCGTATTTGGTGGAATCCCTGTTGGGGAAACCCTC
CAGGGCGAATCCTGGCAGGAAATCCAAGCTGCGAGGACTTGACATGAGTT
CCCCACCTCCAGAAATCTCCACAATTTGTCCCTGACTCAGATATTTTGCA
GCGGAAAGTGTGTTGAGAAGTACTCCCCTGGGTGAC
BS16556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7144-PA | 2787 | CG7144-RA | 1968..2787 | 836..17 | 4075 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LKR-RB | 3495 | CG7144-RB | 2093..2912 | 836..17 | 4085 | 99.9 | Minus |
LKR-RA | 3264 | CG7144-RA | 2093..2912 | 836..17 | 4085 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7792175..7792698 | 313..836 | 2620 | 100 | Plus |
2L | 23513712 | 2L | 7791936..7792116 | 133..313 | 905 | 100 | Plus |
2L | 23513712 | 2L | 7791758..7791877 | 17..136 | 585 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:00:11 has no hits.
BS16556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:21 Download gff for
BS16556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7144-PA | 1968..2787 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:10 Download gff for
BS16556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 2093..2912 | 17..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:43 Download gff for
BS16556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 2093..2912 | 17..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:43 Download gff for
BS16556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7791758..7791876 | 17..135 | 99 | <- | Plus |
2L | 7791939..7792115 | 136..312 | 100 | <- | Plus |
2L | 7792175..7792698 | 313..836 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:10 Download gff for
BS16556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7791939..7792115 | 136..312 | 100 | <- | Plus |
arm_2L | 7791758..7791876 | 17..135 | 99 | <- | Plus |
arm_2L | 7792175..7792698 | 313..836 | 100 | | Plus |
BS16556.5prime Sequence
920 bp (856 high quality bases) assembled on 2007-05-15
> BS16556.5prime
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGCAAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCGATCGGATCATCTGGAGCGTCGTGAGGGCGGCGGATTTGAT
GCCAAGGAATACGATGAGTTCCCCGAACGATACATCTCCACCTTTAGCAC
GAAGATAGCTCCGTACGCAT
BS16556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7144-PA | 2787 | CG7144-RA | 1..904 | 17..920 | 4445 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LKR-RB | 3495 | CG7144-RB | 124..1029 | 15..920 | 4485 | 99.7 | Plus |
LKR-RA | 3264 | CG7144-RA | 124..1029 | 15..920 | 4485 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7794148..7794528 | 776..396 | 1905 | 100 | Minus |
2L | 23513712 | 2L | 7794592..7794771 | 397..218 | 855 | 98.3 | Minus |
2L | 23513712 | 2L | 7795509..7795657 | 221..73 | 730 | 99.3 | Minus |
2L | 23513712 | 2L | 7793940..7794083 | 920..777 | 720 | 100 | Minus |
2L | 23513712 | 2L | 7795775..7795836 | 76..15 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:39:31 has no hits.
BS16556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:51 Download gff for
BS16556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7144-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:15 Download gff for
BS16556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 124..1029 | 15..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:26 Download gff for
BS16556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
LKR-RA | 124..1029 | 15..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:26 Download gff for
BS16556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7793940..7794083 | 777..920 | 100 | <- | Minus |
2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
2L | 7795775..7795836 | 15..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:15 Download gff for
BS16556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7793940..7794083 | 777..920 | 100 | <- | Minus |
arm_2L | 7794148..7794526 | 398..776 | 100 | <- | Minus |
arm_2L | 7794592..7794768 | 221..397 | 98 | <- | Minus |
arm_2L | 7795510..7795653 | 77..220 | 100 | <- | Minus |
arm_2L | 7795775..7795836 | 15..76 | 100 | | Minus |
BS16556.pep Sequence
Translation from 16 to 2802
> BS16556.pep
MWRVIQLRATIAHPFTRQRHSRVIAIRREDQSVWERRAPFGPTHVQKLVK
QNVKVIVQPSNRRAYPMQAYMQAGAHIQEDISDASVIFGVKQVPIDALIP
GKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDYERIIDERGARQVAFGK
YAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNSSMARQAIRDCG
YEISLGMMPKSIGPLTFVFTGSGNVSQGAQEVFSELPIEYVPPEMLRKVA
EHGNQNKLYGCEVSRSDHLERREGGGFDAKEYDEFPERYISTFSTKIAPY
ASVIVNGIYWAVGSPKLISIPDAKNLLRPANTPWLPTSKGSPALPHRMLA
ICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVLVCSID
NMPTQLPRESTDLFGELLAPHVHDIIKSDAKKPLAEENFSYPIQSAIIAS
NGQLTEGFQYIQELRESQSHRSRHKMEGSSESDKKVLVLGAGMVSAPLVE
WLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDVNESTGHLQELCGR
ADVVVSLLPYSLHGMVARYCVAEGTHMVTASYLNDEISGLHEEAKAKGVT
IMNEVGLDPGIDHLLALECIHEVQDKGAVVESFVSYCGGLPAPEHSNNAL
RYKFSWSPRGVLLNTLSAAKYLSQGQIVEISGGGELMSSPRSLDFLPGFA
LEGFPNRDSTKYGNLYGLGRDVHTLLRGTIRYKGFSESIKPMQLLGLIDP
EPHALLHPSGPDVTWRQLVIHLMGMSDSTIFYENLKQKLTERIGDVDGIE
SLGLLDDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVGIRWPD
GRREERGINFVVYGQPQGHSAMAMTVGKPAAIAAKMILDGEIQERGVLLP
FTPDIYRPMLQRLRSEGLTATETSRWLN*
BS16556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
LKR-PB | 928 | CG7144-PB | 1..928 | 1..928 | 4842 | 100 | Plus |
LKR-PA | 928 | CG7144-PA | 1..928 | 1..928 | 4842 | 100 | Plus |