Clone BS16556 Report

Search the DGRC for BS16556

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptLKR-RA
Protein status:BS16556.pep: full length peptide match
Sequenced Size:2819

Clone Sequence Records

BS16556.complete Sequence

2819 bp assembled on 2009-12-07

GenBank Submission: KX804787

> BS16556.complete
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGCAAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCGATCGGATCATCTGGAGCGTCGTGAGGGCGGCGGATTTGAT
GCCAAGGAATACGATGAGTTCCCCGAACGATACATCTCCACCTTTAGCAC
GAAGATAGCTCCGTACGCATCGGTTATTGTTAACGGCATCTACTGGGCCG
TAGGCAGTCCCAAGTTGATCAGCATTCCGGATGCCAAGAATCTGCTACGT
CCGGCAAACACTCCCTGGCTGCCGACGAGCAAGGGTAGTCCGGCTTTGCC
ACATCGCATGCTGGCCATTTGCGACATTTCCGCTGATCCCGGTGGCTCCA
TTGAGTTTATGAACGAGTGCACCACCATCGACACTCCATTCTGCTTGTAC
GATGCGGACAGGAATAAGGATACCAAGAGCTTTAAGGGACCCGGAGTTTT
AGTCTGTTCGATTGATAATATGCCTACACAATTGCCCAGAGAATCGACGG
ATTTGTTTGGAGAGCTGTTGGCTCCTCATGTTCATGATATTATAAAGAGC
GATGCCAAGAAGCCGTTGGCAGAGGAGAACTTCTCATACCCCATTCAGTC
GGCTATTATCGCCAGCAACGGTCAGCTGACGGAGGGCTTCCAGTATATTC
AGGAGCTCCGAGAGTCGCAAAGCCACAGATCGCGCCACAAGATGGAGGGA
AGTTCGGAGTCTGACAAGAAGGTCTTGGTTCTGGGAGCTGGCATGGTGTC
CGCTCCACTCGTAGAGTGGCTTCATCGCGAAAAGGACGTCAGCATAACGG
TTTGCTCGCAGGTCAAGGAGGAAGCCGATCGCCTGGCTCAGCAGTATGCT
GGAGTGGACAGCGTCTATCTGGATGTGAACGAGAGCACTGGTCATCTGCA
GGAGCTGTGCGGCAGGGCAGATGTAGTAGTTTCCCTGCTGCCCTACAGTC
TCCATGGCATGGTAGCACGTTATTGCGTGGCAGAGGGCACCCACATGGTT
ACCGCAAGTTATCTGAACGACGAGATCTCCGGTTTGCACGAGGAGGCCAA
GGCCAAAGGTGTGACCATCATGAACGAGGTGGGCTTGGATCCTGGTATCG
ATCACCTTCTGGCACTGGAGTGCATCCACGAGGTGCAGGACAAGGGAGCC
GTTGTCGAGTCCTTCGTGAGCTATTGTGGCGGTCTGCCTGCACCGGAGCA
TTCCAATAATGCCCTAAGATATAAGTTCTCTTGGTCACCCAGGGGAGTAC
TTCTCAACACACTTTCCGCTGCAAAATATCTGAGTCAGGGACAAATTGTG
GAGATTTCTGGAGGTGGGGAACTCATGTCAAGTCCTCGCAGCTTGGATTT
CCTGCCAGGATTCGCCCTGGAGGGTTTCCCCAACAGGGATTCCACCAAAT
ACGGCAACCTTTACGGCTTAGGCAGGGATGTGCACACTTTGCTTCGTGGA
ACCATACGTTATAAGGGCTTTTCGGAATCGATTAAGCCTATGCAGCTCTT
GGGACTTATCGATCCGGAGCCACATGCATTGCTACATCCCAGTGGGCCGG
ATGTCACGTGGCGCCAGCTGGTGATCCATCTAATGGGCATGTCGGACTCG
ACCATCTTCTACGAGAACCTCAAGCAGAAGCTGACTGAGCGCATTGGAGA
TGTGGACGGCATCGAGAGCTTGGGTCTGCTGGATGATACTCCTGTGGTGA
AGCTCAACACTCCGCTGGATACGCTTAGTCACTATCTCTCGAAGAGACTT
GCCTTCGAGCGGGATGAACGCGACCTGGTGGTGCTGCGCCATGAAGTTGG
CATCCGTTGGCCCGATGGTCGTCGTGAGGAGCGTGGAATCAATTTTGTGG
TCTACGGACAGCCCCAGGGTCACTCCGCCATGGCGATGACTGTGGGCAAG
CCGGCTGCCATCGCAGCCAAAATGATCCTAGACGGTGAGATCCAGGAACG
CGGCGTCCTGCTGCCCTTCACTCCCGACATTTATCGTCCCATGCTGCAAC
GTCTACGCTCCGAGGGTCTGACTGCCACGGAAACCTCCAGATGGCTAAAT
TAAAAGCTTTCTAGACCAT

BS16556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:53
Subject Length Description Subject Range Query Range Score Percent Strand
LKR-RB 2787 CG7144-PB 1..2787 17..2803 13830 99.7 Plus
LKR-RA 2787 CG7144-PA 1..2787 17..2803 13830 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
LKR-RB 3495 CG7144-RB 124..2912 15..2803 13840 99.7 Plus
LKR-RA 3264 CG7144-RA 124..2912 15..2803 13840 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7792175..7793331 2507..1351 5740 99.7 Minus
2L 23513712 2L 7793508..7794083 1352..777 2880 100 Minus
2L 23513712 2L 7794148..7794528 776..396 1905 100 Minus
2L 23513712 2L 7791936..7792116 2687..2507 905 100 Minus
2L 23513712 2L 7794592..7794771 397..218 855 98.3 Minus
2L 23513712 2L 7795509..7795657 221..73 730 99.3 Minus
2L 23513712 2L 7791758..7791877 2803..2684 585 99.2 Minus
2L 23513712 2L 7795775..7795836 76..15 310 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:16:51 has no hits.

BS16556.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:47 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
CG7144-RA 125..2909 17..2801 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:27 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 126..2910 17..2801 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:32 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
CG7144-RA 125..2909 17..2801 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:01 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 126..2910 17..2801 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:01 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7791760..7791876 2685..2801 99 <- Minus
2L 7791939..7792115 2508..2684 100 <- Minus
2L 7792175..7793330 1352..2507 99 <- Minus
2L 7793509..7794083 777..1351 100 <- Minus
2L 7794148..7794526 398..776 100 <- Minus
2L 7794592..7794768 221..397 98 <- Minus
2L 7795510..7795653 77..220 100 <- Minus
2L 7795775..7795834 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:27 Download gff for BS16556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7791760..7791876 2685..2801 99 <- Minus
arm_2L 7791939..7792115 2508..2684 100 <- Minus
arm_2L 7792175..7793330 1352..2507 99 <- Minus
arm_2L 7793509..7794083 777..1351 100 <- Minus
arm_2L 7794148..7794526 398..776 100 <- Minus
arm_2L 7794592..7794768 221..397 98 <- Minus
arm_2L 7795510..7795653 77..220 100 <- Minus
arm_2L 7795775..7795834 17..76 100   Minus

BS16556.3prime Sequence

836 bp (801 high quality bases) assembled on 2007-05-15

> BS16556.3prime
ATGGTCTAGAAAGCTTTTAATTTAGCCATCTGGAGGTTTCCGTGGCAGTC
AGACCCTCGGAGCGTAGACGTTGCAGCATGGGACGATAAATGTCGGGAGT
GAAGGGCAGCAGGACGCCGCGTTCCTGGATCTCACCGTCTAGGATCATTT
TGGCTGCGATGGCAGCCGGCTTGCCCACAGTCATCGCCATGGCGGAGTGA
CCCTGGGGCTGTCCGTAGACCACAAAATTGATTCCACGCTCCTCACGACG
ACCATCGGGCCAACGGATGCCAACTTCATGGCGCAGCACCACCAGGTCGC
GTTCATCCCGCTCGAAGGCAAGTCTCTTCGAGAGATAGTGACTAAGCGTA
TCCAGCGGAGTGTTGAGCTTCACCACAGGAGTATCATCCAGCAGACCCAA
GCTCTCGATGCCGTCCACATCTCCAATGCGCTCAGTCAGCTTCTGCTTGA
GGTTCTCGTAGAAGATGGTCGAGTCCGACATGCCCATTAGATGGATCACC
AGCTGGCGCCACGTGACATCCGGCCCACTGGGATGTAGCAATGCATGTGG
CTCCGGATCGATAAGTCCCAAGAGCTGCATAGGCTTAATCGATTCCGAAA
AGCCCTTATAACGTATGGTTCCACGAAGCAAAGTGTGCACATCCCTGCCT
AAGCCGTAAAGGTTGCCGTATTTGGTGGAATCCCTGTTGGGGAAACCCTC
CAGGGCGAATCCTGGCAGGAAATCCAAGCTGCGAGGACTTGACATGAGTT
CCCCACCTCCAGAAATCTCCACAATTTGTCCCTGACTCAGATATTTTGCA
GCGGAAAGTGTGTTGAGAAGTACTCCCCTGGGTGAC

BS16556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7144-PA 2787 CG7144-RA 1968..2787 836..17 4075 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:00:13
Subject Length Description Subject Range Query Range Score Percent Strand
LKR-RB 3495 CG7144-RB 2093..2912 836..17 4085 99.9 Minus
LKR-RA 3264 CG7144-RA 2093..2912 836..17 4085 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7792175..7792698 313..836 2620 100 Plus
2L 23513712 2L 7791936..7792116 133..313 905 100 Plus
2L 23513712 2L 7791758..7791877 17..136 585 99.2 Plus
Blast to na_te.dros performed on 2015-02-13 07:00:11 has no hits.

BS16556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:21 Download gff for BS16556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7144-PA 1968..2787 17..836 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:48:10 Download gff for BS16556.3prime
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 2093..2912 17..836 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:43 Download gff for BS16556.3prime
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 2093..2912 17..836 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:43 Download gff for BS16556.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7791758..7791876 17..135 99 <- Plus
2L 7791939..7792115 136..312 100 <- Plus
2L 7792175..7792698 313..836 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:48:10 Download gff for BS16556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7791939..7792115 136..312 100 <- Plus
arm_2L 7791758..7791876 17..135 99 <- Plus
arm_2L 7792175..7792698 313..836 100   Plus

BS16556.5prime Sequence

920 bp (856 high quality bases) assembled on 2007-05-15

> BS16556.5prime
GAAGTTATCAGTCGACATGTGGCGAGTGATTCAACTGCGCGCAACAATCG
CGCATCCGTTCACCAGACAACGTCATAGTCGAGTGATTGCCATTCGGCGA
GAGGATCAGTCGGTGTGGGAGCGACGAGCTCCGTTTGGACCAACCCACGT
CCAGAAGTTGGTCAAGCAGAATGTCAAGGTCATAGTGCAGCCGTCCAATC
GTCGTGCCTACCCCATGCAGGCCTACATGCAGGCTGGAGCTCATATTCAG
GAGGACATCAGTGATGCTTCGGTGATATTCGGAGTGAAACAGGTGCCCAT
AGATGCACTGATTCCTGGGAAGACGTACTGCTTCTTTTCACACACGATTA
AAGCGCAGGAATCAAATATGCCGCTTCTGGATGCTATTTTGGAGAAGAAA
ATTCGGCTCATCGACTATGAGCGAATCATCGACGAACGCGGAGCACGACA
GGTGGCCTTTGGCAAATATGCCGGAGTGGCTGGCATGGTGAACATCCTGC
ACGGCATTGGACTGCGTCTTTTGGCCCTGGGACATCATACACCATTCATG
CACATTGGACCCGCTCATAACTATCGCAATTCCTCGATGGCTCGCCAGGC
AATCCGGGATTGTGGCTACGAGATCTCGCTTGGCATGATGCCCAAGTCCA
TTGGACCACTTACATTTGTGTTCACTGGCTCTGGAAATGTTTCCCAAGGT
GCCCAGGAGGTGTTCTCCGAGCTGCCCATTGAGTATGTTCCACCGGAGAT
GCTACGCAAGGTGGCCGAACATGGAAATCAAAATAAGCTTTACGGCTGCG
AGGTGAGCCGATCGGATCATCTGGAGCGTCGTGAGGGCGGCGGATTTGAT
GCCAAGGAATACGATGAGTTCCCCGAACGATACATCTCCACCTTTAGCAC
GAAGATAGCTCCGTACGCAT

BS16556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7144-PA 2787 CG7144-RA 1..904 17..920 4445 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
LKR-RB 3495 CG7144-RB 124..1029 15..920 4485 99.7 Plus
LKR-RA 3264 CG7144-RA 124..1029 15..920 4485 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:39:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7794148..7794528 776..396 1905 100 Minus
2L 23513712 2L 7794592..7794771 397..218 855 98.3 Minus
2L 23513712 2L 7795509..7795657 221..73 730 99.3 Minus
2L 23513712 2L 7793940..7794083 920..777 720 100 Minus
2L 23513712 2L 7795775..7795836 76..15 310 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:39:31 has no hits.

BS16556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:48:51 Download gff for BS16556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7144-PA 1..904 17..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:51:15 Download gff for BS16556.5prime
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 124..1029 15..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:26 Download gff for BS16556.5prime
Subject Subject Range Query Range Percent Splice Strand
LKR-RA 124..1029 15..920 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:26 Download gff for BS16556.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7793940..7794083 777..920 100 <- Minus
2L 7794148..7794526 398..776 100 <- Minus
2L 7794592..7794768 221..397 98 <- Minus
2L 7795510..7795653 77..220 100 <- Minus
2L 7795775..7795836 15..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:51:15 Download gff for BS16556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7793940..7794083 777..920 100 <- Minus
arm_2L 7794148..7794526 398..776 100 <- Minus
arm_2L 7794592..7794768 221..397 98 <- Minus
arm_2L 7795510..7795653 77..220 100 <- Minus
arm_2L 7795775..7795836 15..76 100   Minus

BS16556.pep Sequence

Translation from 16 to 2802

> BS16556.pep
MWRVIQLRATIAHPFTRQRHSRVIAIRREDQSVWERRAPFGPTHVQKLVK
QNVKVIVQPSNRRAYPMQAYMQAGAHIQEDISDASVIFGVKQVPIDALIP
GKTYCFFSHTIKAQESNMPLLDAILEKKIRLIDYERIIDERGARQVAFGK
YAGVAGMVNILHGIGLRLLALGHHTPFMHIGPAHNYRNSSMARQAIRDCG
YEISLGMMPKSIGPLTFVFTGSGNVSQGAQEVFSELPIEYVPPEMLRKVA
EHGNQNKLYGCEVSRSDHLERREGGGFDAKEYDEFPERYISTFSTKIAPY
ASVIVNGIYWAVGSPKLISIPDAKNLLRPANTPWLPTSKGSPALPHRMLA
ICDISADPGGSIEFMNECTTIDTPFCLYDADRNKDTKSFKGPGVLVCSID
NMPTQLPRESTDLFGELLAPHVHDIIKSDAKKPLAEENFSYPIQSAIIAS
NGQLTEGFQYIQELRESQSHRSRHKMEGSSESDKKVLVLGAGMVSAPLVE
WLHREKDVSITVCSQVKEEADRLAQQYAGVDSVYLDVNESTGHLQELCGR
ADVVVSLLPYSLHGMVARYCVAEGTHMVTASYLNDEISGLHEEAKAKGVT
IMNEVGLDPGIDHLLALECIHEVQDKGAVVESFVSYCGGLPAPEHSNNAL
RYKFSWSPRGVLLNTLSAAKYLSQGQIVEISGGGELMSSPRSLDFLPGFA
LEGFPNRDSTKYGNLYGLGRDVHTLLRGTIRYKGFSESIKPMQLLGLIDP
EPHALLHPSGPDVTWRQLVIHLMGMSDSTIFYENLKQKLTERIGDVDGIE
SLGLLDDTPVVKLNTPLDTLSHYLSKRLAFERDERDLVVLRHEVGIRWPD
GRREERGINFVVYGQPQGHSAMAMTVGKPAAIAAKMILDGEIQERGVLLP
FTPDIYRPMLQRLRSEGLTATETSRWLN*

BS16556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
LKR-PB 928 CG7144-PB 1..928 1..928 4842 100 Plus
LKR-PA 928 CG7144-PA 1..928 1..928 4842 100 Plus