Clone Sequence Records
BS16561.3prime Sequence
291 bp (291 high quality bases) assembled on 2007-05-15
> BS16561.3prime
ATGGTCTAGAAAGCTTTCAAAGACCGCATTCAAAGGGCACAATGTAGTCG
TCTAGCAGCCGCACGCGGCGGAGTCTTCCTTGCGAGTCCACGCCCACGTC
ACCGCCACTGGATGCAGTCTGCTGTCCGACTTTGAGCCCCTCCTCCTCCT
CATTCCTCAGCTCAACCTGGTGTCGCTGCACCACCAACATGCCGGCTGCT
ATTGCCGCCTCCTGGCGCAGCCATCCGGACATGATCCAGACACGGCGAAT
GCAGGTTGTCAGTGCGAATCGTTCCATGTCGACTGATAACT
BS16561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 261 | CG33293-RA | 1..261 | 277..17 | 1305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..371 | 277..17 | 1305 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:41:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240304..5240564 | 17..277 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:41:43 has no hits.
BS16561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:35 Download gff for
BS16561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-PA | 1..261 | 17..277 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:25:59 Download gff for
BS16561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:38 Download gff for
BS16561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:38 Download gff for
BS16561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240300..5240570 | 12..282 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:25:59 Download gff for
BS16561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066022..1066292 | 12..282 | 97 | | Plus |
BS16561.5prime Sequence
291 bp (291 high quality bases) assembled on 2007-05-15
> BS16561.5prime
GAAGTTATCAGTCGACATGGAACGATTCGCACTGACAACCTGCATTCGCC
GTGTCTGGATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCC
GGCATGTTGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGA
GGAGGGGCTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGG
GCGTGGACTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTAC
ATTGTGCCCTTTGAATGCGGTCTTTGAAAGCTTTCTAGACC
BS16561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 261 | CG33293-RA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:02:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..371 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:02:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240304..5240564 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:02:13 has no hits.
BS16561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:05 Download gff for
BS16561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-PA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:16 Download gff for
BS16561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:23 Download gff for
BS16561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:23 Download gff for
BS16561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240300..5240570 | 12..282 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:16 Download gff for
BS16561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066022..1066292 | 12..282 | 97 | | Minus |
BS16561.complete Sequence
293 bp assembled on 2007-05-07
GenBank Submission: FJ638165
> BS16561.complete
GAAGTTATCAGTCGACATGGAACGATTCGCACTGACAACCTGCATTCGCC
GTGTCTGGATCATGTCCGGATGGCTGCGCCAGGAGGCGGCAATAGCAGCC
GGCATGTTGGTGGTGCAGCGACACCAGGTTGAGCTGAGGAATGAGGAGGA
GGAGGGGCTCAAAGTCGGACAGCAGACTGCATCCAGTGGCGGTGACGTGG
GCGTGGACTCGCAAGGAAGACTCCGCCGCGTGCGGCTGCTAGACGACTAC
ATTGTGCCCTTTGAATGCGGTCTTTGAAAGCTTTCTAGACCAT
BS16561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:48:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 261 | CG33293-PA | 1..261 | 17..277 | 1305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:48:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-RA | 661 | CG33293-RA | 111..371 | 17..277 | 1305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5240304..5240564 | 277..17 | 1305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:48:29 has no hits.
BS16561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:51 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 1..261 | 17..277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:54:02 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:13 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 111..370 | 17..276 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:51 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 105..375 | 12..282 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:08:43 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33293-RA | 111..370 | 17..276 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:08:43 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5240305..5240564 | 17..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:13 Download gff for
BS16561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1066027..1066286 | 17..276 | 100 | | Minus |
BS16561.pep Sequence
Translation from 16 to 276
> BS16561.pep
MERFALTTCIRRVWIMSGWLRQEAAIAAGMLVVQRHQVELRNEEEEGLKV
GQQTASSGGDVGVDSQGRLRRVRLLDDYIVPFECGL*
BS16561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:25:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33293-PA | 86 | CG33293-PA | 1..86 | 1..86 | 441 | 100 | Plus |
