Clone BS16563 Report

Search the DGRC for BS16563

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptCG9098-RB
Protein status:BS16563.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16563.3prime Sequence

881 bp (850 high quality bases) assembled on 2007-05-15

> BS16563.3prime
ATGGTCTAGAAAGCTTTTACTGCTCGGCCATCATGCAAAACTTGTCGGCC
ATCAGGGTGAGCACCTTTTCCAGTTTGTTGTGCCGATCTTCGGCCTTGGC
CGTTGCTCCGGAACTGCCCCATAGGAACTTGACATGGAACTCGGTTCGAA
AAGCATCAGCTAGAAGCTCATCGAGCCGAGGACTAGCATCCTCCAGGATA
ATCTTGGCATTCTTTCGATACAGTTCCAAGTTCTTCAGGAAGCCACGCGA
TGCATCCAGGTGCTGGAAATTAATGGTCATGCCAAAGTCATCCGCTTTCG
ACTCCCAAGGAGCAATACAGGTGTGGTACAGAGCTGGGCGATCGTCAATG
TTGGAGTGGTTTATGATGTCCATAACGGGTCGATCGATCAGTAGTGCATA
CAGCAGAACATGGGGAACGGTTGTGTTTGGAGCCTGTGGATTGGAGGCCT
CGTTCATGATGCTCAACGTGGGTCGCAACTTGGCCTCGAAGGTGAAGGCG
CTGTCCGTGTACTGTTGCCTCAGGATGTGCCAGGCCTGGTCGAGCTTTTG
GATCTGTTGCATGCACAGGCCCAACATGATGGCGCAGAATCCAAACAGAT
TGCCGAGAGCCGTCTTAGTTTCCACTGCGATCTGAATCCATTTACTGAGC
AGTTGGGCTCGGTCCAGATCCGTTTGACAGGTGAGTATGGTCACAGCGAC
CATCAGCTTGATGCACTGCGTCCGCTCTATTATGTCCTCCCTAAAGACCT
TTCCATGGGGCAGTGTTAGCAGCTCAAGACCCGAACAGCTCAGATAGTAG
TCCTCCTCGTTCGACGGCTCCTCCAAAAACAGGGCAATGTCGATGCGAGT
GATGTGCTCCGCCAGCAGCTTTGGGGCCGTC

BS16563.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 2835 CG9098-RA 1971..2835 881..17 4275 99.7 Minus
CG9098-PB 2262 CG9098-RB 1398..2262 881..17 4275 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RC 3470 CG9098-RC 2062..2926 881..17 4295 99.8 Minus
CG9098-RB 2998 CG9098-RB 1731..2595 881..17 4295 99.8 Minus
CG9098-RA 3481 CG9098-RA 2073..2937 881..17 4295 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6008096..6008505 147..556 2035 99.8 Plus
2L 23513712 2L 6008755..6009082 554..881 1625 99.7 Plus
2L 23513712 2L 6007908..6008038 17..147 655 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:03:57 has no hits.

BS16563.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:54:53 Download gff for BS16563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-PB 1398..2262 17..881 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:39:39 Download gff for BS16563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 2073..2940 12..881 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:35:51 Download gff for BS16563.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 2073..2940 12..881 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:35:51 Download gff for BS16563.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6007905..6008037 12..146 98 <- Plus
2L 6008096..6008502 147..553 99 <- Plus
2L 6008755..6009082 554..881 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:39:39 Download gff for BS16563.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6007905..6008037 12..146 98 <- Plus
arm_2L 6008096..6008502 147..553 99 <- Plus
arm_2L 6008755..6009082 554..881 99   Plus

BS16563.5prime Sequence

888 bp (812 high quality bases) assembled on 2007-05-15

> BS16563.5prime
GAAGTTATCAGTCGACATGGGCAACACCCAAGCCCGACAACTGGAGAACC
GCCAAGTGCCGAATCGGAGGAGCAGCATTTTGTGGAACTTTCGGTACTCG
AACACAGTGCGTCGTCGCGAAGATTTGGCCGTAATGGTGCACAACTCTAG
GATGAGCATAAGCGAGTGGCTGGACCTTCTGGAGCTGCAGCAGTACGAAG
GAAACCTACAGGAGTTCAGCACCGTGGACGATGTGGTGGACATCACGGAC
AAGGAGCTGAAGCAATTTGGCGTGCGCGGTGCCCATCGCCAGAGGATGGT
CAATAGTTTGCTGGGTGTTCGTGCCAAGCGAAGGCAGTCCATGAATCTGG
AAGCAATGAGCAGTGCGCCGCGAGCAGTGCCACGGCGCAAGAAATCGTGT
CCATTGGTGTATCTGGGTGAGAATCCCCAAGATATGGCGGGAAGCGGCGA
TAGCGGACCCGGCGTGATTACCACCAAGAGTGGCAAGGTCCTGAAGCAAC
TAACCTTTGATGAGACCTCCACCATCTACGAGGAACTAAGGCCGCGCTCC
AAGTGCAACAGTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTA
TGGGAGCAGCAATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCA
GCGAGCAACAGGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTG
AGTTTGGACGCCAGGGAGCTGCGTTCGCACGCCTGGTACCACGGCGCACT
GCCACGCCAGCGGGCCGAGGAGATCGTGCAGCGCGAGGGCGACTTCCTGG
TCCGCGACTGCGCCTCCCAGCCGGACAACTATGTGCTCAGCTGCCGGAGC
AAAGCGGCTGTACTGCACTTCGTACTTAATAAGTTGGT

BS16563.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 2835 CG9098-RA 1..872 17..888 4110 98.8 Plus
CG9098-PB 2262 CG9098-RB 1..299 590..888 1420 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 3481 CG9098-RA 101..974 15..888 4220 98.9 Plus
CG9098-RC 3470 CG9098-RC 101..963 15..888 4045 97.6 Plus
CG9098-RB 2998 CG9098-RB 270..632 526..888 1755 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6010309..6010670 887..526 1735 98.6 Minus
2L 23513712 2L 6011555..6011728 525..352 810 97.7 Minus
2L 23513712 2L 6011783..6011937 353..199 745 98.7 Minus
2L 23513712 2L 6011985..6012111 201..75 635 100 Minus
2L 23513712 2L 6012178..6012238 75..15 305 100 Minus
Blast to na_te.dros performed 2015-02-11 04:19:18
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2858..2889 699..730 115 84.4 Plus

BS16563.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:24 Download gff for BS16563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-PA 1..872 17..888 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:41 Download gff for BS16563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..974 15..888 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:45:39 Download gff for BS16563.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..974 15..888 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:45:39 Download gff for BS16563.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6010307..6010670 526..888 98 <- Minus
2L 6011555..6011726 354..525 97 <- Minus
2L 6011783..6011935 201..353 98 <- Minus
2L 6011986..6012111 75..200 100 <- Minus
2L 6012179..6012238 15..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:41 Download gff for BS16563.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6010307..6010670 526..888 98 <- Minus
arm_2L 6011555..6011726 354..525 97 <- Minus
arm_2L 6011783..6011935 201..353 98 <- Minus
arm_2L 6011986..6012111 75..200 100 <- Minus
arm_2L 6012179..6012238 15..74 100   Minus

BS16563.complete Sequence

2867 bp assembled on 2007-10-17

GenBank Submission: KX805809

> BS16563.complete
GAAGTTATCAGTCGACATGGGCAACACCCAAGCCCGACAACTGGAGAACC
GCCAAGTGCCGAATCGGAGGAGCAGCATTTTGTGGAACTTTCGGTACTCG
AACACAGTGCGTCGTCGCGAAGATTTGGCCGTAATGGTGCACAACTCTAG
GATGAGCATAAGCGAGTGGCTGGACCTTCTGGAGCTGCAGCAGTACGAAG
GAAACCTACAGGAGTTCAGCACCGTGGACGATGTGGTGGACATCACGGAC
AAGGAGCTGAAGCAATTTGGCGTGCGCGGTGCCCATCGCCAGAGGATGGT
CAATAGTTTGCTGGGTGTTCGTGCCAAGCGAAGGCAGTCCATGAATCTGG
AAGCAATGAGCAGTGCGCCGCGAGCAGTGCCACGGCGCAAGAAATCGTGT
CCATTGGTGTATCTGGGTGAGAATCCCCAAGATATGGCGGGAAGCGGCGA
TAGCGGACCCGGCGTGATTACCACCAAGAGTGGCAAGGTCCTGAAGCAAC
TAACCTTTGATGAGACCTCCACCATCTACGAGGAACTAAGGCCGCGCTCC
AAGTGCAACAGTCCCCATTGGGCCATCGAAGACAGCAGGATGGAGGGCTA
TGGGAGCAGCAATGCCACCACTCCGCTGGCCACCGCCCAGCCCAGTCCCA
GCGAGCAACAGGAGGCCATCGCCCTGAAGAAGGCGCTCGAGTGGGAGCTG
AGTTTGGACGCCAGGGAGCTGCGTTCGCACGCCTGGTACCACGGCGCACT
GCCACGCCAGCGGGCCGAGGAGATCGTGCAGCGCGAGGGCGACTTCCTGG
TCCGCGACTGCGCCTCCCAGCCGGACAACTATGTGCTCAGCTGCCGGAGC
AAAGCGGCTGTACTGCACTTCGTACTTAATAAGTTGGTGCTTCAACCGGA
GACGGTTTACGAACGTGTGCAGTACCAGTTCGAGGAGGATGCCTTTGATA
CGGTGCCCGACCTAATTACCTTCTACGTGGGATCCGGCAAGCCCATCTCG
TCAGCATCGGGAGCGCTCATTCAGTTTCCCTGCAATCGCACCTATCCGCT
CTCCTTCTACGGCCACAAGATCGTGGGCAACCAACTGCACACGCAGATGC
TGGCCGGTCTGCGAGGTCTGAGTCCTCTGAACTCGCCGATGGGCAGCAAT
GGTGCAGTGGGAGCAGGTATGAACGCTACCTTTCGCTTCGAACCGCAGCA
GCAGCAGCAGCAACAGCTCTCGCCGATGGCTGGCTCACCAGCCAGTCCGC
ACTGCTCGCCGCCGAGGGCACGTAGAGAGGTGCCTCCACCGCCGCGGCTG
CCGTGCAAGAAGCAACAGCGCTCCCAGAGCCTCACACCGGCACAGGCCAT
GTTGGTCAGCAACATCAACAAGCTTCAGGAGCAACAACTACAGATGCAGG
AGCTTGAGAATGGCAATGGCAACGGAATAATGCGCTTCCAGACAATCGCC
AGGTGCAATCCGACCAGTGAGCAGCACCTGGAGAGCAAGTTCACAACCCA
CTCGCTGCCCAGACCCAACACTTCGGCGGCGCACGCTCTGCGCCAGCAAG
CGGTGGCCCGAATCTCGAGCCTGGCGAGAAACTGCAGCCTGGACTCGCCG
TCGGACTCACGGCCGCCCAGTCCGCCGCCCAAGCCACGCAAGGAACCCAT
GGCAGCGGTGTTGGCATACCAGGCCAGTGGATCCGACTCGGGGAATGGGT
CCGGTGATTCGGCTCTAGGGGATGCATGTGAGGCGAGCGTACAGCGGGGT
GTGATAATCAAGAATCCCCGATTCATGACCACTTCGGTCTCGAACGGAAC
GCTGAAGAGCTTCACGGAGTTCGACGTCCTGGCCGCTGAGGAAGAACTAT
TCACCATGGCCATAGAAGAAGTTAAAACAGCAAGCAAGTTTGACTTTGAG
AACTTTGTTACTTTGCTACTGCCATCTGTGGAGAACAAGCCCCTGGATGG
CGATGCCCTCAACACGTTCAAGATGATGCTTCTGGAGACGGGCCCAAAGC
TGCTGGCGGAGCACATCACTCGCATCGACATTGCCCTGTTTTTGGAGGAG
CCGTCGAACGAGGAGGACTACTATCTGAGCTGTTCGGGTCTTGAGCTGCT
AACACTGCCCCATGGAAAGGTCTTTAGGGAGGACATAATAGAGCGGACGC
AGTGCATCAAGCTGATGGTCGCTGTGACCATACTCACCTGTCAAACGGAT
CTGGACCGAGCCCAACTGCTCAGTAAATGGATTCAGATCGCAGTGGAAAC
TAAGACGGCTCTCGGCAATCTGTTTGGATTCTGCGCCATCATGTTGGGCC
TGTGCATGCAACAGATCCAAAAGCTCGACCAGGCCTGGCACATCCTGAGG
CAACAGTACACGGACAGCGCCTTCACCTTCGAGGCCAAGTTGCGACCCAC
GTTGAGCATCATGAACGAGGCCTCCAATCCACAGGCTCCAAACACAACCG
TTCCCCATGTTCTGCTGTATGCACTACTGATCGATCGACCCGTTATGGAC
ATCATAAACCACTCCAACATTGACGATCGCCCAGCTCTGTACCACACCTG
TATTGCTCCTTGGGAGTCGAAAGCGGATGACTTTGGCATGACCATTAATT
TCCAGCACCTGGATGCATCGCGTGGCTTCCTGAAGAACTTGGAACTGTAT
CGAAAGAATGCCAAGATTATCCTGGAGGATGCTAGTCCTCGGCTCGATGA
GCTTCTAGCTGATGCTTTTCGAACCGAGTTCCATGTCAAGTTCCTATGGG
GCAGTTCCGGAGCAACGGCCAAGGCCGAAGATCGGCACAACAAACTGGAA
AAGGTGCTCACCCTGATGGCCGACAAGTTTTGCATGATGGCCGAGCAGTA
AAAGCTTTCTAGACCAT

BS16563.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 2835 CG9098-PA 1..2835 17..2851 13875 99.3 Plus
CG9098-RC 2262 CG9098-PC 1..2262 590..2851 11115 99.4 Plus
CG9098-RB 2262 CG9098-PB 1..2262 590..2851 11115 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-RA 3481 CG9098-RA 101..2937 15..2851 13885 99.3 Plus
CG9098-RC 3470 CG9098-RC 101..2926 15..2851 13685 98.9 Plus
CG9098-RB 2998 CG9098-RB 270..2595 526..2851 11420 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6009240..6010242 1884..882 4865 99 Minus
2L 23513712 2L 6008755..6009189 2314..1880 2175 100 Minus
2L 23513712 2L 6008096..6008505 2721..2312 2035 99.8 Minus
2L 23513712 2L 6010309..6010670 887..526 1735 98.6 Minus
2L 23513712 2L 6011555..6011728 525..352 810 97.7 Minus
2L 23513712 2L 6011783..6011937 353..199 745 98.7 Minus
2L 23513712 2L 6007908..6008038 2851..2721 655 100 Minus
2L 23513712 2L 6011985..6012111 201..75 635 100 Minus
2L 23513712 2L 6012178..6012238 75..15 305 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:52:36 has no hits.

BS16563.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:05 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 1..2835 17..2851 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:49:34 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 101..2940 15..2856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:20 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 103..2935 17..2849 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:31 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 103..2935 17..2849 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:57:53 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
CG9098-RA 103..2935 17..2849 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:57:53 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6007910..6008037 2722..2849 100 <- Minus
2L 6008096..6008502 2315..2721 99 <- Minus
2L 6008755..6009189 1880..2314 100 <- Minus
2L 6009245..6010240 884..1879 99 <- Minus
2L 6010313..6010670 526..883 98 <- Minus
2L 6011555..6011726 354..525 97 <- Minus
2L 6011783..6011935 201..353 98 <- Minus
2L 6011986..6012111 75..200 100 <- Minus
2L 6012179..6012236 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:20 Download gff for BS16563.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6011783..6011935 201..353 98 <- Minus
arm_2L 6011986..6012111 75..200 100 <- Minus
arm_2L 6012179..6012236 17..74 100   Minus
arm_2L 6007910..6008037 2722..2849 100 <- Minus
arm_2L 6008096..6008502 2315..2721 99 <- Minus
arm_2L 6008755..6009189 1880..2314 100 <- Minus
arm_2L 6009245..6010240 884..1879 99 <- Minus
arm_2L 6010313..6010670 526..883 98 <- Minus
arm_2L 6011555..6011726 354..525 97 <- Minus

BS16563.pep Sequence

Translation from 16 to 2850

> BS16563.pep
MGNTQARQLENRQVPNRRSSILWNFRYSNTVRRREDLAVMVHNSRMSISE
WLDLLELQQYEGNLQEFSTVDDVVDITDKELKQFGVRGAHRQRMVNSLLG
VRAKRRQSMNLEAMSSAPRAVPRRKKSCPLVYLGENPQDMAGSGDSGPGV
ITTKSGKVLKQLTFDETSTIYEELRPRSKCNSPHWAIEDSRMEGYGSSNA
TTPLATAQPSPSEQQEAIALKKALEWELSLDARELRSHAWYHGALPRQRA
EEIVQREGDFLVRDCASQPDNYVLSCRSKAAVLHFVLNKLVLQPETVYER
VQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQFPCNRTYPLSFYGH
KIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRFEPQQQQQQQ
LSPMAGSPASPHCSPPRARREVPPPPRLPCKKQQRSQSLTPAQAMLVSNI
NKLQEQQLQMQELENGNGNGIMRFQTIARCNPTSEQHLESKFTTHSLPRP
NTSAAHALRQQAVARISSLARNCSLDSPSDSRPPSPPPKPRKEPMAAVLA
YQASGSDSGNGSGDSALGDACEASVQRGVIIKNPRFMTTSVSNGTLKSFT
EFDVLAAEEELFTMAIEEVKTASKFDFENFVTLLLPSVENKPLDGDALNT
FKMMLLETGPKLLAEHITRIDIALFLEEPSNEEDYYLSCSGLELLTLPHG
KVFREDIIERTQCIKLMVAVTILTCQTDLDRAQLLSKWIQIAVETKTALG
NLFGFCAIMLGLCMQQIQKLDQAWHILRQQYTDSAFTFEAKLRPTLSIMN
EASNPQAPNTTVPHVLLYALLIDRPVMDIINHSNIDDRPALYHTCIAPWE
SKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASPRLDELLADA
FRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADKFCMMAEQ*

BS16563.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9098-PA 944 CG9098-PA 1..944 1..944 4881 99.9 Plus
CG9098-PC 753 CG9098-PC 1..753 192..944 3901 100 Plus
CG9098-PB 753 CG9098-PB 1..753 192..944 3901 100 Plus