Clone Sequence Records
BS16575.3prime Sequence
899 bp (861 high quality bases) assembled on 2007-05-15
> BS16575.3prime
ATGGTCTAGAAAGCTTTTAATAACTTAAAAATAAAAATGCTATATTTGAA
ATACTTACTTTTTCTCCAACTACAATTTCATTTTGGTTGTTGTGCTGATT
TTCACTATGGATCACTAAAGGATGAATACAGTGAAGTCCAGATTTTTGTG
TAGCCGGAGGAAGTTTTATTAAATCGGACTCTGGGATTCTCCACATTTTA
AGATCATCATTCCATAAAGAATTTTGCAAAATAGTGTCTGGAGTCCAATT
CCGGTCAAATTTTCCGGGATTTGAAGAAAATTTCAAAAAAAGTTGTTGAT
GGAACTTCACTTGACGTCCAAGGTTGCGAATTTCGTCCAAATAATCCTCT
CTATCCAGCTGAAATTCTGAATTTAAATCGGAAACTTCCATTTCAAGCAT
TTTAATTTTCTCTTTGCACTTTCTAATATAATCATTTTTTATATCAATTT
CTTGTGTAATAGTGGCATAATGCCCCTGCAAAAGGTCGCGATCTTCACAT
TTCACTCTACTTAAGGCAATAGCTATTGCACTTAAGTGGCGTTGGGCTGC
ATATTTTCGGGCCATGTGCTTTTCTTTAAGCTCGAAATCATGGATACGTT
CACCACCAATTAAACTACGCTTTATTAGATCGATTCGACTTCGCGCTTGC
AGTTGTACCTCTTCTTTCGATTGAATTAAAGGGAAATTTGGTTTTGTTAA
TATAGAGTTATTTGTTTTAAAGGATGCCTTACAATTTCGACCTAAATCTA
TTATTTGAACATTTTTTGTAGAATTCATATTTGTATGTTGTATAATTTTT
AGAGGTGATTTTATTATTTTATTTGGATCATTATTTTTATTAATGATTTG
TTGACTCTCTTGAAGCATTCTTTTTCAATATAGTATTTCATTTTGGTAC
BS16575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17461-PA | 1950 | Kif3C-RA | 1068..1950 | 899..17 | 4365 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kif3C-RA | 4376 | CG17461-RA | 1149..2032 | 899..16 | 4390 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1165714..1166368 | 899..245 | 3245 | 99.7 | Minus |
4 | 1348131 | 4 | 1166665..1166895 | 246..16 | 1155 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 02:27:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 828..902 | 444..371 | 129 | 65.3 | Minus |
BS16575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:16 Download gff for
BS16575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17461-PA | 1068..1950 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:46:43 Download gff for
BS16575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 1149..2038 | 11..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:19:02 Download gff for
BS16575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 1149..2038 | 11..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:19:02 Download gff for
BS16575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1165714..1166367 | 246..899 | 99 | -> | Minus |
4 | 1166666..1166901 | 11..245 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:46:43 Download gff for
BS16575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1186340..1186993 | 246..899 | 99 | -> | Minus |
arm_4 | 1187292..1187527 | 11..245 | 98 | | Minus |
BS16575.5prime Sequence
860 bp (783 high quality bases) assembled on 2007-05-15
> BS16575.5prime
GAAGTTATCAGTCGACATGAGTGAAAATATTAAAGTTGTTGTTCGATGTC
GTCCGATGAACCAAACTGAAAAAGAACGAAACTGTCAAAACATTGTTGAA
ATTAATGAATTTGCAGTTTCCGTGACTAATCCATCAGCTCGCATATCTCA
ACAAAAAAAATTCATATTTGATAGTGTTTATAATATGAAAACTGACACGG
AAGTGATTTACGACGAGATGTGTTATTCATTAGTTGAGAGTACAATCGAA
GGATATAATGGAACCATTTTTGCTTACGGTCAAACAGGTTGTGGGAAAAC
ACACACAATGCAGGGCGACGAAAATTTCAGCAACAGCACTGGAATAATTC
CCAAATGTTTTGATCATATATTTGAAAGGATATCAATGACCACAAATGTC
AGATATTTGGCATTAGTAACGTATTTGGAAATTTATAATGAACGTATTCG
AGATTTACTTAATAAAAATGAAAATACGAACGTGATAAATCATTTCCTTA
AGGAACTACCAGGTATTGGTGTTTCAGTTCCAACGCTTACCACGCAACCT
GTTGTCAATGCAAATCAATGTTACGATTGGCTACATTTTGGAAATAAAAA
TCGAGTAACTGCAGCTACATTAATGAATAAGAATAGCTCACGATCCCACA
CTATATTTACTATCACTTTGGAACAATCTCCATTTTTAAATAGTATTGGA
TCGGATGCCTTTGGAGGAATATGTAGAGGAAAACTAAGCTTAGTAGACCT
AGCAGGCTCCGAGAGGCAGCGAAAGACTGGGGCTCAAGGAGACCGACTTA
ANGAAGCTTCCCAAATAAACTTATCACTTTCTGCATTANGCAACGTTATT
TCATCTTTGG
BS16575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17461-PA | 1950 | Kif3C-RA | 1..844 | 17..860 | 4182 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kif3C-RA | 4376 | CG17461-RA | 82..925 | 17..860 | 4198 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1164880..1165428 | 312..860 | 2723 | 99.6 | Plus |
4 | 1348131 | 4 | 1148985..1149214 | 85..314 | 1135 | 99.6 | Plus |
4 | 1348131 | 4 | 1147547..1147618 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:02:39 has no hits.
BS16575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:46 Download gff for
BS16575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17461-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:20 Download gff for
BS16575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 75..925 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:26 Download gff for
BS16575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 75..925 | 9..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:26 Download gff for
BS16575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1147540..1147618 | 9..88 | 95 | -> | Plus |
4 | 1148989..1149213 | 89..313 | 100 | -> | Plus |
4 | 1164882..1165428 | 314..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:20 Download gff for
BS16575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1169615..1169839 | 89..313 | 100 | -> | Plus |
arm_4 | 1168166..1168244 | 9..88 | 95 | -> | Plus |
arm_4 | 1185508..1186054 | 314..860 | 99 | | Plus |
BS16575.complete Sequence
1982 bp assembled on 2010-05-10
GenBank Submission: KX802805
> BS16575.complete
GAAGTTATCAGTCGACATGAGTGAAAATATTAAAGTTGTTGTTCGATGTC
GTCCGATGAACCAAACTGAAAAAGAACGAAACTGTCAAAACATTGTTGAA
ATTAATGAATTTGCAGTTTCCGTGACTAATCCATCAGCTCGCATATCTCA
ACAAAAAAAATTCATATTTGATAGTGTTTATAATATGAAAACTGACACGG
AAGTGATTTACGACGAGATGTGTTATTCATTAGTTGAGAGTACAATCGAA
GGATATAATGGAACCATTTTTGCTTACGGTCAAACAGGTTGTGGGAAAAC
ACACACAATGCAGGGCGACGAAAATTTCAGCAACAGCACTGGAATAATTC
CCAAATGTTTTGATCATATATTTGAAAGGATATCAATGACCACAAATGTC
AGATATTTGGCATTAGTAACGTATTTGGAAATTTATAATGAACGTATTCG
AGATTTACTTAATAAAAATGAAAATACGAACGTGATAAATCATTTCCTTA
AGGAACTACCAGGTATTGGTGTTTCAGTTCCAACGCTTACCACGCAACCT
GTTGTCAATGCAAATCAATGTTACGATTGGCTACATTTTGGAAATAAAAA
TCGAGTAACTGCAGCTACATTAATGAATAAGAATAGCTCACGATCCCACA
CTATATTTACTATCACTTTGGAACAATCTCCATTTTTAAATAGTATTGGA
TCGGATGCCTTTGGAGGAATATGTAGAGGAAAACTAAGCTTAGTAGACCT
AGCAGGCTCCGAGAGGCAGCGAAAGACTGGGGCTCAAGGAGACCGACTTA
AGGAAGCTTCCCAAATAAACTTATCACTTTCTGCATTAGGCAACGTTATT
TCATCTTTGGTGGATGGCAAAGCAAAGCATGTACCCTTTAGGGACTCAAA
ACTTACACGCCTGCTCCAGGATTCCTTAGGAGGGAATACAAAAACTCTTA
TGATATCTTGTATATCACCAACAGACATACATTATGATGAAACCATATCT
ACACTTCGATATGCAAGTAGAGCAAAGAATATTTCTAATAAACCCAAAAT
TAATGAAGATCCAAAGGATGCAAGACTTCGACAGTACCAAAATGAAATAC
TATATTTGAAAAGAATGCTTCAAGAGAGTCAACAAATCATTAATAAAAAT
AATGATCCAAATAAAATAATAAAATCACCTCTAAAAATTATACAACATAC
AAATATGAATTCTACAAAAAATGTTCAAATAATAGATTTAGGTCGAAATT
GTAAGGCATCCTTTAAAACAAATAACTCTATATTAACAAAACCAAATTTC
CCTTTAATTCAATCGAAAGAAGAGGTACAACTGCAAGCGCGAAGTCGAAT
CGATCTAATAAAGCGTAGTTTAATTGGTGGTGAACGTATCCATGATTTCG
AGCTTAAAGAAAAGCACATGGCCCGAAAATATGCAGCCCAACGCCACTTA
AGTGCAATAGCTATTGCCTTAAGTAGAGTGAAATGTGAAGATCGCGACCT
TTTGCAGGGGCATTATGCCACTATTACACAAGAAATTGATATAAAAAATG
ATTATATTAGAAAGTGCAAAGAGAAAATTAAAATGCTTGAAATGGAAGTT
TCCGATTTAAATTCAGAATTTCAGCTGGATAGAGAGGATTATTTGGACGA
AATTCGCAACCTTGGACGTCAAGTGAAGTTCCATCAACAACTTTTTTTGA
AATTTTCTTCAAATCCCGGAAAATTTGACCGGAATTGGACTCCAGACACT
ATTTTGCAAAATTCTTTATGGAATGATGATCTTAAAATGTGGAGAATCCC
AGAGTCCGATTTAATAAAACTTCCTCCGGCTACACAAAAATCTGGACTTC
ACTGTATTCATCCTTTAGTGATCCATAGTGAAAATCAGCACAACAACCAA
AATGAAATTGTAGTTGGAGAAAAAGTAAGTATTTCAAATATAGCATTTTT
ATTTTTAAGTTATTAAAAGCTTTCTAGACCAT
BS16575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kif3C-RA | 1950 | CG17461-PA | 1..1950 | 17..1966 | 9750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kif3C-RA | 4376 | CG17461-RA | 82..2032 | 17..1967 | 9755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 1165548..1166368 | 918..1738 | 4105 | 100 | Plus |
4 | 1348131 | 4 | 1164880..1165488 | 312..920 | 3045 | 100 | Plus |
4 | 1348131 | 4 | 1166665..1166895 | 1737..1967 | 1155 | 100 | Plus |
4 | 1348131 | 4 | 1148985..1149214 | 85..314 | 1135 | 99.6 | Plus |
4 | 1348131 | 4 | 1147547..1147618 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rover | 7318 | rover ROVER 7318bp | 6096..6456 | 977..1330 | 187 | 54.9 | Plus |
412 | 7567 | 412 412 7567bp | 852..916 | 1023..1089 | 159 | 73.1 | Plus |
17.6 | 7439 | 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). | 828..902 | 1539..1612 | 129 | 65.3 | Plus |
BS16575.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:58 Download gff for
BS16575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 82..2029 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:19 Download gff for
BS16575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 82..2029 | 17..1964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:18 Download gff for
BS16575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kif3C-RA | 82..2029 | 17..1964 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:18 Download gff for
BS16575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 1147547..1147618 | 17..88 | 100 | -> | Plus |
4 | 1148989..1149213 | 89..313 | 100 | -> | Plus |
4 | 1164882..1165487 | 314..919 | 100 | -> | Plus |
4 | 1165550..1166367 | 920..1737 | 100 | -> | Plus |
4 | 1166666..1166892 | 1738..1964 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:19 Download gff for
BS16575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 1168173..1168244 | 17..88 | 100 | -> | Plus |
arm_4 | 1169615..1169839 | 89..313 | 100 | -> | Plus |
arm_4 | 1185508..1186113 | 314..919 | 100 | -> | Plus |
arm_4 | 1186176..1186993 | 920..1737 | 100 | -> | Plus |
arm_4 | 1187292..1187518 | 1738..1964 | 100 | | Plus |
BS16575.pep Sequence
Translation from 16 to 1965
> BS16575.pep
MSENIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFI
FDSVYNMKTDTEVIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQG
DENFSNSTGIIPKCFDHIFERISMTTNVRYLALVTYLEIYNERIRDLLNK
NENTNVINHFLKELPGIGVSVPTLTTQPVVNANQCYDWLHFGNKNRVTAA
TLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSER
QRKTGAQGDRLKEASQINLSLSALGNVISSLVDGKAKHVPFRDSKLTRLL
QDSLGGNTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPK
DARLRQYQNEILYLKRMLQESQQIINKNNDPNKIIKSPLKIIQHTNMNST
KNVQIIDLGRNCKASFKTNNSILTKPNFPLIQSKEEVQLQARSRIDLIKR
SLIGGERIHDFELKEKHMARKYAAQRHLSAIAIALSRVKCEDRDLLQGHY
ATITQEIDIKNDYIRKCKEKIKMLEMEVSDLNSEFQLDREDYLDEIRNLG
RQVKFHQQLFLKFSSNPGKFDRNWTPDTILQNSLWNDDLKMWRIPESDLI
KLPPATQKSGLHCIHPLVIHSENQHNNQNEIVVGEKVSISNIAFLFLSY*
BS16575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kif3C-PA | 649 | CG17461-PA | 1..649 | 1..649 | 3359 | 100 | Plus |
Klp64D-PA | 677 | CG10642-PA | 19..611 | 3..594 | 936 | 37.6 | Plus |
Klp68D-PB | 784 | CG7293-PB | 17..557 | 2..538 | 861 | 39 | Plus |
Klp68D-PA | 784 | CG7293-PA | 17..557 | 2..538 | 861 | 39 | Plus |
unc-104-PI | 1661 | CG8566-PI | 3..418 | 4..407 | 663 | 39.2 | Plus |