Clone BS16575 Report

Search the DGRC for BS16575

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:165
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptKif3C-RA
Protein status:BS16575.pep: full length peptide match
Sequenced Size:1982

Clone Sequence Records

BS16575.3prime Sequence

899 bp (861 high quality bases) assembled on 2007-05-15

> BS16575.3prime
ATGGTCTAGAAAGCTTTTAATAACTTAAAAATAAAAATGCTATATTTGAA
ATACTTACTTTTTCTCCAACTACAATTTCATTTTGGTTGTTGTGCTGATT
TTCACTATGGATCACTAAAGGATGAATACAGTGAAGTCCAGATTTTTGTG
TAGCCGGAGGAAGTTTTATTAAATCGGACTCTGGGATTCTCCACATTTTA
AGATCATCATTCCATAAAGAATTTTGCAAAATAGTGTCTGGAGTCCAATT
CCGGTCAAATTTTCCGGGATTTGAAGAAAATTTCAAAAAAAGTTGTTGAT
GGAACTTCACTTGACGTCCAAGGTTGCGAATTTCGTCCAAATAATCCTCT
CTATCCAGCTGAAATTCTGAATTTAAATCGGAAACTTCCATTTCAAGCAT
TTTAATTTTCTCTTTGCACTTTCTAATATAATCATTTTTTATATCAATTT
CTTGTGTAATAGTGGCATAATGCCCCTGCAAAAGGTCGCGATCTTCACAT
TTCACTCTACTTAAGGCAATAGCTATTGCACTTAAGTGGCGTTGGGCTGC
ATATTTTCGGGCCATGTGCTTTTCTTTAAGCTCGAAATCATGGATACGTT
CACCACCAATTAAACTACGCTTTATTAGATCGATTCGACTTCGCGCTTGC
AGTTGTACCTCTTCTTTCGATTGAATTAAAGGGAAATTTGGTTTTGTTAA
TATAGAGTTATTTGTTTTAAAGGATGCCTTACAATTTCGACCTAAATCTA
TTATTTGAACATTTTTTGTAGAATTCATATTTGTATGTTGTATAATTTTT
AGAGGTGATTTTATTATTTTATTTGGATCATTATTTTTATTAATGATTTG
TTGACTCTCTTGAAGCATTCTTTTTCAATATAGTATTTCATTTTGGTAC

BS16575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17461-PA 1950 Kif3C-RA 1068..1950 899..17 4365 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:27:28
Subject Length Description Subject Range Query Range Score Percent Strand
Kif3C-RA 4376 CG17461-RA 1149..2032 899..16 4390 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1165714..1166368 899..245 3245 99.7 Minus
4 1348131 4 1166665..1166895 246..16 1155 100 Minus
Blast to na_te.dros performed 2015-02-13 02:27:25
Subject Length Description Subject Range Query Range Score Percent Strand
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 828..902 444..371 129 65.3 Minus

BS16575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:16 Download gff for BS16575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17461-PA 1068..1950 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:46:43 Download gff for BS16575.3prime
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 1149..2038 11..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:19:02 Download gff for BS16575.3prime
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 1149..2038 11..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 06:19:02 Download gff for BS16575.3prime
Subject Subject Range Query Range Percent Splice Strand
4 1165714..1166367 246..899 99 -> Minus
4 1166666..1166901 11..245 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:46:43 Download gff for BS16575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1186340..1186993 246..899 99 -> Minus
arm_4 1187292..1187527 11..245 98   Minus

BS16575.5prime Sequence

860 bp (783 high quality bases) assembled on 2007-05-15

> BS16575.5prime
GAAGTTATCAGTCGACATGAGTGAAAATATTAAAGTTGTTGTTCGATGTC
GTCCGATGAACCAAACTGAAAAAGAACGAAACTGTCAAAACATTGTTGAA
ATTAATGAATTTGCAGTTTCCGTGACTAATCCATCAGCTCGCATATCTCA
ACAAAAAAAATTCATATTTGATAGTGTTTATAATATGAAAACTGACACGG
AAGTGATTTACGACGAGATGTGTTATTCATTAGTTGAGAGTACAATCGAA
GGATATAATGGAACCATTTTTGCTTACGGTCAAACAGGTTGTGGGAAAAC
ACACACAATGCAGGGCGACGAAAATTTCAGCAACAGCACTGGAATAATTC
CCAAATGTTTTGATCATATATTTGAAAGGATATCAATGACCACAAATGTC
AGATATTTGGCATTAGTAACGTATTTGGAAATTTATAATGAACGTATTCG
AGATTTACTTAATAAAAATGAAAATACGAACGTGATAAATCATTTCCTTA
AGGAACTACCAGGTATTGGTGTTTCAGTTCCAACGCTTACCACGCAACCT
GTTGTCAATGCAAATCAATGTTACGATTGGCTACATTTTGGAAATAAAAA
TCGAGTAACTGCAGCTACATTAATGAATAAGAATAGCTCACGATCCCACA
CTATATTTACTATCACTTTGGAACAATCTCCATTTTTAAATAGTATTGGA
TCGGATGCCTTTGGAGGAATATGTAGAGGAAAACTAAGCTTAGTAGACCT
AGCAGGCTCCGAGAGGCAGCGAAAGACTGGGGCTCAAGGAGACCGACTTA
ANGAAGCTTCCCAAATAAACTTATCACTTTCTGCATTANGCAACGTTATT
TCATCTTTGG

BS16575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17461-PA 1950 Kif3C-RA 1..844 17..860 4182 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Kif3C-RA 4376 CG17461-RA 82..925 17..860 4198 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1164880..1165428 312..860 2723 99.6 Plus
4 1348131 4 1148985..1149214 85..314 1135 99.6 Plus
4 1348131 4 1147547..1147618 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-04 21:02:39 has no hits.

BS16575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:46 Download gff for BS16575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17461-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:20 Download gff for BS16575.5prime
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 75..925 9..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:26 Download gff for BS16575.5prime
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 75..925 9..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:26 Download gff for BS16575.5prime
Subject Subject Range Query Range Percent Splice Strand
4 1147540..1147618 9..88 95 -> Plus
4 1148989..1149213 89..313 100 -> Plus
4 1164882..1165428 314..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:20 Download gff for BS16575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 1169615..1169839 89..313 100 -> Plus
arm_4 1168166..1168244 9..88 95 -> Plus
arm_4 1185508..1186054 314..860 99   Plus

BS16575.complete Sequence

1982 bp assembled on 2010-05-10

GenBank Submission: KX802805

> BS16575.complete
GAAGTTATCAGTCGACATGAGTGAAAATATTAAAGTTGTTGTTCGATGTC
GTCCGATGAACCAAACTGAAAAAGAACGAAACTGTCAAAACATTGTTGAA
ATTAATGAATTTGCAGTTTCCGTGACTAATCCATCAGCTCGCATATCTCA
ACAAAAAAAATTCATATTTGATAGTGTTTATAATATGAAAACTGACACGG
AAGTGATTTACGACGAGATGTGTTATTCATTAGTTGAGAGTACAATCGAA
GGATATAATGGAACCATTTTTGCTTACGGTCAAACAGGTTGTGGGAAAAC
ACACACAATGCAGGGCGACGAAAATTTCAGCAACAGCACTGGAATAATTC
CCAAATGTTTTGATCATATATTTGAAAGGATATCAATGACCACAAATGTC
AGATATTTGGCATTAGTAACGTATTTGGAAATTTATAATGAACGTATTCG
AGATTTACTTAATAAAAATGAAAATACGAACGTGATAAATCATTTCCTTA
AGGAACTACCAGGTATTGGTGTTTCAGTTCCAACGCTTACCACGCAACCT
GTTGTCAATGCAAATCAATGTTACGATTGGCTACATTTTGGAAATAAAAA
TCGAGTAACTGCAGCTACATTAATGAATAAGAATAGCTCACGATCCCACA
CTATATTTACTATCACTTTGGAACAATCTCCATTTTTAAATAGTATTGGA
TCGGATGCCTTTGGAGGAATATGTAGAGGAAAACTAAGCTTAGTAGACCT
AGCAGGCTCCGAGAGGCAGCGAAAGACTGGGGCTCAAGGAGACCGACTTA
AGGAAGCTTCCCAAATAAACTTATCACTTTCTGCATTAGGCAACGTTATT
TCATCTTTGGTGGATGGCAAAGCAAAGCATGTACCCTTTAGGGACTCAAA
ACTTACACGCCTGCTCCAGGATTCCTTAGGAGGGAATACAAAAACTCTTA
TGATATCTTGTATATCACCAACAGACATACATTATGATGAAACCATATCT
ACACTTCGATATGCAAGTAGAGCAAAGAATATTTCTAATAAACCCAAAAT
TAATGAAGATCCAAAGGATGCAAGACTTCGACAGTACCAAAATGAAATAC
TATATTTGAAAAGAATGCTTCAAGAGAGTCAACAAATCATTAATAAAAAT
AATGATCCAAATAAAATAATAAAATCACCTCTAAAAATTATACAACATAC
AAATATGAATTCTACAAAAAATGTTCAAATAATAGATTTAGGTCGAAATT
GTAAGGCATCCTTTAAAACAAATAACTCTATATTAACAAAACCAAATTTC
CCTTTAATTCAATCGAAAGAAGAGGTACAACTGCAAGCGCGAAGTCGAAT
CGATCTAATAAAGCGTAGTTTAATTGGTGGTGAACGTATCCATGATTTCG
AGCTTAAAGAAAAGCACATGGCCCGAAAATATGCAGCCCAACGCCACTTA
AGTGCAATAGCTATTGCCTTAAGTAGAGTGAAATGTGAAGATCGCGACCT
TTTGCAGGGGCATTATGCCACTATTACACAAGAAATTGATATAAAAAATG
ATTATATTAGAAAGTGCAAAGAGAAAATTAAAATGCTTGAAATGGAAGTT
TCCGATTTAAATTCAGAATTTCAGCTGGATAGAGAGGATTATTTGGACGA
AATTCGCAACCTTGGACGTCAAGTGAAGTTCCATCAACAACTTTTTTTGA
AATTTTCTTCAAATCCCGGAAAATTTGACCGGAATTGGACTCCAGACACT
ATTTTGCAAAATTCTTTATGGAATGATGATCTTAAAATGTGGAGAATCCC
AGAGTCCGATTTAATAAAACTTCCTCCGGCTACACAAAAATCTGGACTTC
ACTGTATTCATCCTTTAGTGATCCATAGTGAAAATCAGCACAACAACCAA
AATGAAATTGTAGTTGGAGAAAAAGTAAGTATTTCAAATATAGCATTTTT
ATTTTTAAGTTATTAAAAGCTTTCTAGACCAT

BS16575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Kif3C-RA 1950 CG17461-PA 1..1950 17..1966 9750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:58
Subject Length Description Subject Range Query Range Score Percent Strand
Kif3C-RA 4376 CG17461-RA 82..2032 17..1967 9755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:54
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 1165548..1166368 918..1738 4105 100 Plus
4 1348131 4 1164880..1165488 312..920 3045 100 Plus
4 1348131 4 1166665..1166895 1737..1967 1155 100 Plus
4 1348131 4 1148985..1149214 85..314 1135 99.6 Plus
4 1348131 4 1147547..1147618 17..88 360 100 Plus
Blast to na_te.dros performed 2014-11-28 02:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
rover 7318 rover ROVER 7318bp 6096..6456 977..1330 187 54.9 Plus
412 7567 412 412 7567bp 852..916 1023..1089 159 73.1 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 828..902 1539..1612 129 65.3 Plus

BS16575.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-10 11:54:58 Download gff for BS16575.complete
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 82..2029 17..1964 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:19 Download gff for BS16575.complete
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 82..2029 17..1964 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:18 Download gff for BS16575.complete
Subject Subject Range Query Range Percent Splice Strand
Kif3C-RA 82..2029 17..1964 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:18 Download gff for BS16575.complete
Subject Subject Range Query Range Percent Splice Strand
4 1147547..1147618 17..88 100 -> Plus
4 1148989..1149213 89..313 100 -> Plus
4 1164882..1165487 314..919 100 -> Plus
4 1165550..1166367 920..1737 100 -> Plus
4 1166666..1166892 1738..1964 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:19 Download gff for BS16575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 1168173..1168244 17..88 100 -> Plus
arm_4 1169615..1169839 89..313 100 -> Plus
arm_4 1185508..1186113 314..919 100 -> Plus
arm_4 1186176..1186993 920..1737 100 -> Plus
arm_4 1187292..1187518 1738..1964 100   Plus

BS16575.pep Sequence

Translation from 16 to 1965

> BS16575.pep
MSENIKVVVRCRPMNQTEKERNCQNIVEINEFAVSVTNPSARISQQKKFI
FDSVYNMKTDTEVIYDEMCYSLVESTIEGYNGTIFAYGQTGCGKTHTMQG
DENFSNSTGIIPKCFDHIFERISMTTNVRYLALVTYLEIYNERIRDLLNK
NENTNVINHFLKELPGIGVSVPTLTTQPVVNANQCYDWLHFGNKNRVTAA
TLMNKNSSRSHTIFTITLEQSPFLNSIGSDAFGGICRGKLSLVDLAGSER
QRKTGAQGDRLKEASQINLSLSALGNVISSLVDGKAKHVPFRDSKLTRLL
QDSLGGNTKTLMISCISPTDIHYDETISTLRYASRAKNISNKPKINEDPK
DARLRQYQNEILYLKRMLQESQQIINKNNDPNKIIKSPLKIIQHTNMNST
KNVQIIDLGRNCKASFKTNNSILTKPNFPLIQSKEEVQLQARSRIDLIKR
SLIGGERIHDFELKEKHMARKYAAQRHLSAIAIALSRVKCEDRDLLQGHY
ATITQEIDIKNDYIRKCKEKIKMLEMEVSDLNSEFQLDREDYLDEIRNLG
RQVKFHQQLFLKFSSNPGKFDRNWTPDTILQNSLWNDDLKMWRIPESDLI
KLPPATQKSGLHCIHPLVIHSENQHNNQNEIVVGEKVSISNIAFLFLSY*

BS16575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
Kif3C-PA 649 CG17461-PA 1..649 1..649 3359 100 Plus
Klp64D-PA 677 CG10642-PA 19..611 3..594 936 37.6 Plus
Klp68D-PB 784 CG7293-PB 17..557 2..538 861 39 Plus
Klp68D-PA 784 CG7293-PA 17..557 2..538 861 39 Plus
unc-104-PI 1661 CG8566-PI 3..418 4..407 663 39.2 Plus