Clone Sequence Records
BS16585.3prime Sequence
923 bp (788 high quality bases) assembled on 2007-05-15
> BS16585.3prime
ATGGTCTAGAAAGCTTTCAAATGATTGGCTTGTTCCGAACCTTGTCTAGG
ATATCAGCTCGATTCGTACTGGCCAACATCAGCACGCCCTCCTTGGTGGC
CATACCGTCCATCTCGACCAGCAGCTGATTAAGCGTCTGCTCCGATTCGC
CAGAGCTGCCCTGTCCCATGCTTTCAGTTCCCGAACGTTGCCGACCGATG
GCGTCTATCTCATCGATGTAAATGATGCATGGCGCCCGTTTTTTGCCTTC
CTTAAACAGATCACGCACTCGCGCGGCCCCCAGACCGCCAATCATCTCGA
TGAACTCGGAGCCGTTCATGCTGAGAAACGGCACCTGGGCCTCGGTGGCG
ACCGCCTTGGCCAGTAGCGTCTTGCCGCATCCTGGTGGACCCAGGAGTAG
GGCTCCTCGCGGCACCTTGGCGCCCAGCCGCTGGTACTTCTCCGGCGACT
TGAGGTAATCTACAAATTCCTTCACCTCCTGTTTCGCCTCACTGAGACCG
GCCACGTCCCGGAAAAGCACACCGCGACCGCCATCGAAAGGATCAACTAG
CGTGAACTTGGCACGGCCCATTTGGTTAAATGAATCCATGCTGAGCGGGC
TCTTGATGCTCTTCATGCGGGTGGCAATCGACATAAGCAGAGCGCAGACG
AGAAGCAGCATGAGAATACGTCCGGTGGTGTCCGTCTGCCGGTCGTAGGT
CACCGGCACACCATCCTTGATGCCCAAACGCTTCTCCACATCACGCAGCT
TCTCCTCAAACTTGTTGGCATCGGCCACCGCCATGTGAAAGATGGTGGAA
GACACCTTCCGACCCTTGATGACGGCTCCCTCGTGCAGAATGATGGTCAC
CATTTCCATGTCGGGTCTGATGATCAGCTCCTTGACTTCGCCCACGGCCA
GCATGTGGTGCACAAACTCCTTT
BS16585.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-PB | 1515 | CG2658-RB | 613..1515 | 919..17 | 4490 | 99.8 | Minus |
CG2658-PA | 2460 | CG2658-RA | 613..1492 | 919..40 | 4375 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:24:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-RC | 3360 | CG2658-RC | 841..1720 | 919..40 | 4385 | 99.9 | Minus |
CG2658-RA | 3029 | CG2658-RA | 841..1720 | 919..40 | 4385 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:24:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2696297..2696857 | 17..577 | 2805 | 100 | Plus |
X | 23542271 | X | 2696916..2697257 | 578..919 | 1695 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:24:22 has no hits.
BS16585.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:55:26 Download gff for
BS16585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-PB | 609..1515 | 17..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:59:47 Download gff for
BS16585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 837..1722 | 36..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:34 Download gff for
BS16585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 837..1722 | 36..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:34 Download gff for
BS16585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2696916..2697260 | 578..923 | 99 | | Plus |
X | 2696293..2696857 | 11..577 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:59:47 Download gff for
BS16585.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2590326..2590890 | 11..577 | 99 | <- | Plus |
arm_X | 2590949..2591293 | 578..923 | 99 | | Plus |
BS16585.5prime Sequence
867 bp (790 high quality bases) assembled on 2007-05-15
> BS16585.5prime
GAAGTTATCAGTCGACATGTTGAAGGGCCTGCGGCATGTGCGGAATGCGC
TGCAGCGCGGTGGATCTCAGCTGATCCAGCTCCGCAGTGCCACAGGACAA
CCCCCAAGGATTGGGCGGGAACTGTCGCTCCTTCAGCTCAGCCGGCGGCA
GGTGATGCAGCTGCAGGCGGAGTACAAGGCAATTGTGGGCCTAATAGCGC
GCTCCCTGCAGCTGACTCCCAAGGAGGTTAGACTGATGCACCTGCGCAGC
CTGAGCAGCACCGCAAAACCTCCTACCGCTTCGGATGGCAAGACGGAAAA
GCATGAACAGCCCGAGAAGGGCAGTGCCAAGGCTAAAGATGATTCGTCGA
AGGAGAAAAAGTCAGCTGTCGCGGCGGAGGATGGCGATAAGAGCAGCAGA
GCGGCAGGAGAGGAGGCCGCCAGTACTCCTACTTCTAGCAGTACCATTGG
TGAGCCCGGCGAAGATCCCAACAAAAACAGCAACGAGAATGACGAAAAGA
TGCGTTCTGTACTGACTAAGGCCGTACTGTGGCTCTTTACCATCTACATG
TTTGTGGCCTTCTTTTCCCTGCTAATTACTCCGCGCTCCGAGAGACCAGA
GGGTTCCACGCGCTATGTGTCGTGGAACGAGTTCGTGCACCACATGCTGG
CCGTGGGCGAAGTCAAGGAGCTGATCATCAGACCCGACATGGAAATGGTG
ACCATCATTCTGCACGAGGGAGCCGTCATCAAGGGTCGGAAGGTGTCTTC
CACCATCTTTCACATGGCGGTGGCCGATGCCAACAAGTTTGAGGAGAAGC
TGCGTGATGTGGAGAAGCGTTTGGGCATCAAGGATGGTGTGCCGGTGACC
TACGACCGGCAGACGGA
BS16585.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-PA | 2460 | CG2658-RA | 1..851 | 17..867 | 4255 | 100 | Plus |
CG2658-PB | 1515 | CG2658-RB | 1..851 | 17..867 | 4255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:36:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-RC | 3360 | CG2658-RC | 229..1079 | 17..867 | 4255 | 100 | Plus |
CG2658-RA | 3029 | CG2658-RA | 229..1079 | 17..867 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2697338..2697790 | 602..150 | 2265 | 100 | Minus |
X | 23542271 | X | 2697019..2697286 | 867..600 | 1340 | 100 | Minus |
X | 23542271 | X | 2697847..2697983 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:36:21 has no hits.
BS16585.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:49:55 Download gff for
BS16585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-PB | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:44:34 Download gff for
BS16585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 229..1078 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:50 Download gff for
BS16585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 229..1078 | 17..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:50 Download gff for
BS16585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2697339..2697788 | 152..601 | 100 | <- | Minus |
X | 2697849..2697983 | 17..151 | 100 | | Minus |
X | 2697020..2697284 | 602..866 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:44:34 Download gff for
BS16585.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2591053..2591317 | 602..866 | 100 | <- | Minus |
arm_X | 2591372..2591821 | 152..601 | 100 | <- | Minus |
arm_X | 2591882..2592016 | 17..151 | 100 | | Minus |
BS16585.complete Sequence
1547 bp assembled on 2007-05-07
GenBank Submission: FJ638166
> BS16585.complete
GAAGTTATCAGTCGACATGTTGAAGGGCCTGCGGCATGTGCGGAATGCGC
TGCAGCGCGGTGGATCTCAGCTGATCCAGCTCCGCAGTGCCACAGGACAA
CCCCCAAGGATTGGGCGGGAACTGTCGCTCCTTCAGCTCAGCCGGCGGCA
GGTGATGCAGCTGCAGGCGGAGTACAAGGCAATTGTGGGCCTAATAGCGC
GCTCCCTGCAGCTGACTCCCAAGGAGGTTAGACTGATGCACCTGCGCAGC
CTGAGCAGCACCGCAAAACCTCCTACCGCTTCGGATGGCAAGACGGAAAA
GCATGAACAGCCCGAGAAGGGCAGTGCCAAGGCTAAAGATGATTCGTCGA
AGGAGAAAAAGTCAGCTGTCGCGGCGGAGGATGGCGATAAGAGCAGCAGA
GCGGCAGGAGAGGAGGCCGCCAGTACTCCTACTTCTAGCAGTACCATTGG
TGAGCCCGGCGAAGATCCCAACAAAAACAGCAACGAGAATGACGAAAAGA
TGCGTTCTGTACTGACTAAGGCCGTACTGTGGCTCTTTACCATCTACATG
TTTGTGGCCTTCTTTTCCCTGCTAATTACTCCGCGCTCCGAGAGACCAGA
GGGTTCCACGCGCTATGTGTCGTGGAACGAGTTCGTGCACCACATGCTGG
CCGTGGGCGAAGTCAAGGAGCTGATCATCAGACCCGACATGGAAATGGTG
ACCATCATTCTGCACGAGGGAGCCGTCATCAAGGGTCGGAAGGTGTCTTC
CACCATCTTTCACATGGCGGTGGCCGATGCCAACAAGTTTGAGGAGAAGC
TGCGTGATGTGGAGAAGCGTTTGGGCATCAAGGATGGTGTGCCGGTGACC
TACGACCGGCAGACGGACACCACCGGACGTATTCTCATGCTGCTTCTCGT
CTGCGCTCTGCTTATGTCGATTGCCACCCGCATGAAGAGCATCAAGAGCC
CGCTCAGCATGGATTCATTTAACCAAATGGGCCGTGCCAAGTTCACGCTA
GTTGATCCTTTCGATGGCGGTCGCGGTGTGCTTTTCCGGGACGTGGCCGG
TCTCAGTGAGGCGAAACAGGAGGTGAAGGAATTTGTAGATTACCTCAAGT
CGCCGGAGAAGTACCAGCGGCTGGGCGCCAAGGTGCCGCGAGGAGCCCTA
CTCCTGGGTCCACCAGGATGCGGCAAGACGCTACTGGCCAAGGCGGTCGC
CACCGAGGCCCAGGTGCCGTTTCTCAGCATGAACGGCTCCGAGTTCATCG
AGATGATTGGCGGTCTGGGGGCCGCGCGAGTGCGTGATCTGTTTAAGGAA
GGCAAAAAACGGGCGCCATGCATCATTTACATCGATGAGATAGACGCCAT
CGGTCGGCAACGTTCGGGAACTGAAAGCATGGGACAGGGCAGCTCTGGCG
AATCGGAGCAGACGCTTAATCAGCTGCTGGTCGAGATGGACGGTATGGCC
ACCAAGGAGGGCGTGCTGATGTTGGCCAGTACGAATCGAGCTGATATCCT
AGACAAGGTTCGGAACAAGCCAATCATTTGAAAGCTTTCTAGACCAT
BS16585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-RC | 2460 | CG2658-PC | 1..1492 | 17..1508 | 7460 | 100 | Plus |
CG2658-RA | 2460 | CG2658-PA | 1..1492 | 17..1508 | 7460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-RC | 3360 | CG2658-RC | 229..1720 | 17..1508 | 7460 | 100 | Plus |
CG2658-RA | 3029 | CG2658-RA | 229..1720 | 17..1508 | 7460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2696297..2696857 | 1531..971 | 2805 | 100 | Minus |
X | 23542271 | X | 2697338..2697790 | 602..150 | 2265 | 100 | Minus |
X | 23542271 | X | 2696916..2697286 | 970..600 | 1855 | 100 | Minus |
X | 23542271 | X | 2697847..2697983 | 153..17 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:47:48 has no hits.
BS16585.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:37 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RB | 1..1515 | 17..1531 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:46 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RB | 225..1743 | 17..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:10 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 234..1722 | 22..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:38 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RB | 225..1743 | 17..1537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:58 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2658-RA | 234..1722 | 22..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:58 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2696298..2696857 | 971..1530 | 100 | <- | Minus |
X | 2696916..2697284 | 602..970 | 100 | <- | Minus |
X | 2697339..2697788 | 152..601 | 100 | <- | Minus |
X | 2697849..2697978 | 22..151 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:10 Download gff for
BS16585.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2590331..2590890 | 971..1530 | 100 | <- | Minus |
arm_X | 2590949..2591317 | 602..970 | 100 | <- | Minus |
arm_X | 2591372..2591821 | 152..601 | 100 | <- | Minus |
arm_X | 2591882..2592011 | 22..151 | 100 | | Minus |
BS16585.pep Sequence
Translation from 16 to 1530
> BS16585.pep
MLKGLRHVRNALQRGGSQLIQLRSATGQPPRIGRELSLLQLSRRQVMQLQ
AEYKAIVGLIARSLQLTPKEVRLMHLRSLSSTAKPPTASDGKTEKHEQPE
KGSAKAKDDSSKEKKSAVAAEDGDKSSRAAGEEAASTPTSSSTIGEPGED
PNKNSNENDEKMRSVLTKAVLWLFTIYMFVAFFSLLITPRSERPEGSTRY
VSWNEFVHHMLAVGEVKELIIRPDMEMVTIILHEGAVIKGRKVSSTIFHM
AVADANKFEEKLRDVEKRLGIKDGVPVTYDRQTDTTGRILMLLLVCALLM
SIATRMKSIKSPLSMDSFNQMGRAKFTLVDPFDGGRGVLFRDVAGLSEAK
QEVKEFVDYLKSPEKYQRLGAKVPRGALLLGPPGCGKTLLAKAVATEAQV
PFLSMNGSEFIEMIGGLGAARVRDLFKEGKKRAPCIIYIDEIDAIGRQRS
GTESMGQGSSGESEQTLNQLLVEMDGMATKEGVLMLASTNRADILDKVRN
KPII*
BS16585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2658-PC | 819 | CG2658-PC | 1..502 | 1..502 | 2490 | 99.2 | Plus |
CG2658-PA | 819 | CG2658-PA | 1..502 | 1..502 | 2490 | 99.2 | Plus |
CG6512-PA | 826 | CG6512-PA | 91..486 | 97..502 | 552 | 35.9 | Plus |
CG6512-PB | 697 | CG6512-PB | 59..357 | 201..502 | 544 | 41.6 | Plus |
CG3499-PB | 736 | CG3499-PB | 297..456 | 338..502 | 447 | 55.2 | Plus |