Clone Sequence Records
BS16595.complete Sequence
1991 bp assembled on 2009-12-08
GenBank Submission: KX806066
> BS16595.complete
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGACAACGTCATGT
TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA
GGACACCAGCGCATGGGATATCTGTATGGGACGTACGAGCAGCACACTGA
TGTTCCGTTGGGCATTCGGGCCAAGGTGGCTGCCATTTATGAGCCGCCAC
AAGAGTCTACCAGGGATTCGATCAATATTCAGCCGGATGAGTTCGCCGAC
GATGTGGATGCCGTAGCCAGTGCGCTGGGACTGAAGAAGATTGGTTGGAT
TTTCACTGATCTCATCACGGACGATGCGAGTATCGGCACTGTCAAACAGA
TCCGTGGCATCGAGTCGCACTTTATTACGGCCCAGGAGTGCATCACAGCT
GGCGAGCTGCAGAATCGACATCCAAATCCGTGTAAATATGCCTCCAATGG
CGTCTTCGGCTCTAAGTTTGTGACCATTTGTGTAACAGGAGATAAAACCA
AACAAGTGCACATGGAAGGCTATGCGGTTTCGGCTCAGTGCATGGCTCTG
GTGCGCGATAATTGTCTGATACCCACTAAGGATGCGCCCGAGCTGGGCTA
CGTGCGTGAATCCACGGACAAGCAGTATGTTCCCGACGTTTTCTATAAGG
AGAAGGATCTGTACGGCAACGAGGTGCAGCGGCTGGCTCGCCCCCTGCCC
GTGGAGTATTTGCTGGTGGACGTGCCCGCATCCACACCGCTGCAACCCAT
TTACACCTTCACCGAGTACGACAAGCGCCAGCCATTCCCCATCGAGAACC
GCTACATCGATGGCCACCTGCAGGATTTCAATGCACTCAGCTGCTATCTG
TCCGCCTGGGGCGAGGAGGAGTTCCTGGAGGCCATCTCCGATTTCCACCT
GCTGGTCTACCTGTACAAGATGGACATGCTGCCGCTGCGACAGCACATGG
GTCCGCTGCTGGAGGCAGTTCGCACCAAGAACCCCAACCAGGCCGCCCAG
TTCAAGGTCGTGGATGTGTGGAAGCTGCTCGAGTCGCTTATCCAGGCCAG
TTCCGGCGGCAGTGGTGGAACCACCAGCTATCCCAGTGGTGGAGCTTCGG
CCAGTGCCGGAGCTTCTGGATCGGAGGCAATGGACTTGGACGCCAACACC
TGGACATGCAACCACTGCACCTTCATCAACCGCGGCGAGCTAACGTCCTG
CGAGATCTGCTCGCTACCCAGATAAAAGCTTTCTAGACCAT
BS16595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:47:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-RA | 1959 | CG4673-PA | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| Npl4-RD | 1875 | CG4673-PD | 19..1875 | 119..1975 | 9285 | 100 | Plus |
| Npl4-RB | 1875 | CG4673-PB | 19..1875 | 119..1975 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-RA | 2362 | CG4673-RA | 167..2125 | 17..1975 | 9795 | 100 | Plus |
| Npl4-RD | 2168 | CG4673-RD | 75..1931 | 119..1975 | 9285 | 100 | Plus |
| Npl4-RB | 2208 | CG4673-RB | 75..1931 | 119..1975 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25622355..25622890 | 1046..511 | 2650 | 99.6 | Minus |
| 3R | 32079331 | 3R | 25611522..25611939 | 1815..1398 | 2090 | 100 | Minus |
| 3R | 32079331 | 3R | 25623172..25623406 | 352..118 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 25622102..25622303 | 1239..1038 | 1010 | 100 | Minus |
| 3R | 32079331 | 3R | 25621879..25622044 | 1400..1235 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 25611290..25611450 | 1975..1815 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 25622950..25623109 | 512..353 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 25623478..25623579 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:47:50 has no hits.
BS16595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:24 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4673-RA | 159..2115 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:00 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 167..2123 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:53 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4673-RA | 159..2115 | 17..1973 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:58 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 167..2123 | 17..1973 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:58 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25611292..25611449 | 1816..1973 | 100 | <- | Minus |
| 3R | 25611522..25611937 | 1400..1815 | 100 | <- | Minus |
| 3R | 25621880..25622040 | 1239..1399 | 100 | <- | Minus |
| 3R | 25622103..25622301 | 1040..1238 | 100 | <- | Minus |
| 3R | 25622362..25622890 | 511..1039 | 100 | <- | Minus |
| 3R | 25622952..25623109 | 353..510 | 100 | <- | Minus |
| 3R | 25623172..25623405 | 119..352 | 100 | <- | Minus |
| 3R | 25623478..25623579 | 17..118 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:00 Download gff for
BS16595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21437014..21437171 | 1816..1973 | 100 | <- | Minus |
| arm_3R | 21437244..21437659 | 1400..1815 | 100 | <- | Minus |
| arm_3R | 21447602..21447762 | 1239..1399 | 100 | <- | Minus |
| arm_3R | 21447825..21448023 | 1040..1238 | 100 | <- | Minus |
| arm_3R | 21448084..21448612 | 511..1039 | 100 | <- | Minus |
| arm_3R | 21448674..21448831 | 353..510 | 100 | <- | Minus |
| arm_3R | 21448894..21449127 | 119..352 | 100 | <- | Minus |
| arm_3R | 21449200..21449301 | 17..118 | 100 | | Minus |
BS16595.3prime Sequence
865 bp (664 high quality bases) assembled on 2007-05-15
> BS16595.3prime
ATGGTCTAGAAAGCTTTTATCTGGGTAGCGAGCAGATCTCGCAGGACGTT
AGCTCGCCGCGGTTGATGAAGGTGCAGTGGTTGCATGTCCAGGTGTTGGC
GTCCAAGTCCATTGCCTCCGATCCAGAAGCTCCGGCACTGGCCGAAGCTC
CACCACTGGGATAGCTGGTGGTTCCACCACTGCCGCCGGAACTGGCCTGG
ATAAGCGACTCGAGCAGCTTCCACACATCCACGACCTTGAACTGGGCGGC
CTGGTTGGGGTTCTTGGTGCGAACTGCCTCCAGCAGCGGACCCATGTGCT
GTCGCAGCGGCAGCATGTCCATCTTGTACAGGTAGACCAGCAGGTGGAAA
TCGGAGATGGCCTCCAGGAACTCCTCCTCGCCCCAGGCGGACAGATAGCA
GCTGAGTGCATTGAAATCCTGCAGGTGGCCATCGATGTAGCGGTTCTCGA
TGGGGAATGGCTGGCGCTTGTCGTACTCGGTGAAGGTGTAAATGGGTTGC
AGCGGTGTGGATGCGGGCACGTCCACCAGCAAATACTCCACGGGCAGGGG
GCGAGCCAGCCGCTGCACCTCGTTGCCGTACAGATCCTTCTCCTTATAGA
AAACGTCGGGAACATACTGCTTGTCCGTGGATTCACGCACGTAGCCCAGC
TCGGGCGCATCCTTAGTGGGTATCAGACAATTATCGCGCACCAGAGCCAT
GCACTGAGCCGAAACCGCATAGCCTTCCATGTGCACTTGTTTGGTTTTAT
CTCCTGTTACACAAATGGTCACAAACTTAGAGCCGAAGACGCCATTGGAG
GCATATTTACACGGATTTTGGATGTCGATTCTGCAGCTCGCCAGCTGTGA
TGCACTCCTGGGCCG
BS16595.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4673-PB | 1875 | CG4673-RB | 1074..1875 | 818..17 | 4010 | 100 | Minus |
| CG4673-PA | 1959 | CG4673-RA | 1158..1959 | 818..17 | 4010 | 100 | Minus |
| CG4673-PB | 1875 | CG4673-RB | 1028..1076 | 865..817 | 245 | 100 | Minus |
| CG4673-PA | 1959 | CG4673-RA | 1112..1160 | 865..817 | 245 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-RD | 2168 | CG4673-RD | 1084..1931 | 865..17 | 4220 | 99.9 | Minus |
| Npl4-RA | 2362 | CG4673-RA | 1278..2125 | 865..17 | 4220 | 99.9 | Minus |
| Npl4-RB | 2208 | CG4673-RB | 1084..1931 | 865..17 | 4220 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:25:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25611522..25611939 | 177..594 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 25621879..25622044 | 592..757 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 25611290..25611450 | 17..177 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 25622102..25622213 | 753..865 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:25:26 has no hits.
BS16595.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:39 Download gff for
BS16595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4673-PA | 1112..1959 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:26 Download gff for
BS16595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RB | 1084..1931 | 17..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:41:59 Download gff for
BS16595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RB | 1084..1931 | 17..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:41:59 Download gff for
BS16595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25622103..25622213 | 754..865 | 99 | | Plus |
| 3R | 25611290..25611449 | 17..176 | 100 | <- | Plus |
| 3R | 25611522..25611937 | 177..592 | 100 | <- | Plus |
| 3R | 25621880..25622040 | 593..753 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:26 Download gff for
BS16595.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21437012..21437171 | 17..176 | 100 | <- | Plus |
| arm_3R | 21437244..21437659 | 177..592 | 100 | <- | Plus |
| arm_3R | 21447602..21447762 | 593..753 | 100 | <- | Plus |
| arm_3R | 21447825..21447935 | 754..865 | 99 | | Plus |
BS16595.5prime Sequence
863 bp (719 high quality bases) assembled on 2007-05-15
> BS16595.5prime
GAAGTTATCAGTCGACATGGCCTGTGCACCACTGCTGCTCGAGCAATTCA
TCTACAAGAAGCGCAATTTCGCCTACGCCTTTGTGCGCCATCGTCTGTTT
GTGTTATGTAAACAATCGCTAATTCGCGTTCAGTCGGCGGAGGGCATCAA
ACGCATCGAGATCTCGCCCAAGTCAAATCTAAAGCATCTGTACGACAGCG
TTCAGAATGCCCTGAAGGTGGATGGATTTGGTCTCTTCAAGGAGCGCAAC
TTCCTCACAGAGCTGCAGGCAAGTGGCTCCCAGCTGGTGGGGACTTCCTT
GAGGCATGGCGACATGGTCTACTTAAAACAGATGGCTGGCACATCATCGC
GCCGCACTAGCACCACTGTCCTGGACAGTCAGGCGTTCAAGACTAGCACC
ATTAGCAATCCAAACAGCGCTCGTCCATCCTTCAATGTGATCGAAGATGA
CGTGGACCAGGCTCTGAGCAAGGCTGATGGCACCATTAAGCGCGAACGTG
ATAGCAAGCTGTGCCACCACAATGCCAACGGCCGTTGCGTTCACTGCTCC
GCACTGGAGCCCTATGATGAGTCCTATCTGAAGGAGCACAATATCAAGCA
CTTGTCCTTCCACTCGTACATACGAAAGCAGACATCCGGCATGGATCAGG
GCAAGTACTTTGTCTTCGACGACATCAATTGCCGCATCAAGCCGGGATGT
CGCGAGCATCCACCATGGCCCAAGGGCATCTGCTCCAAGTGCCAGCCGTC
GGCCATTACGCTGAATCGTCAGACATATCGCCACGTGGAACACGTCATGT
TCGAGAACACTAAGATCGTGGAGCGCTTCCTCAACTACTGGCGCACCACA
GGACACCAGCGCA
BS16595.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:52:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4673-PA | 1959 | CG4673-RA | 1..847 | 17..863 | 4185 | 99.7 | Plus |
| CG4673-PB | 1875 | CG4673-RB | 19..763 | 119..863 | 3675 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-RA | 2362 | CG4673-RA | 167..1013 | 17..863 | 4205 | 99.8 | Plus |
| Npl4-RD | 2168 | CG4673-RD | 75..819 | 119..863 | 3695 | 99.7 | Plus |
| Npl4-RB | 2208 | CG4673-RB | 75..819 | 119..863 | 3695 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25622538..25622890 | 863..511 | 1735 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25623172..25623406 | 352..118 | 1175 | 100 | Minus |
| 3R | 32079331 | 3R | 25622950..25623109 | 512..353 | 800 | 100 | Minus |
| 3R | 32079331 | 3R | 25623478..25623579 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:04:39 has no hits.
BS16595.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:52:41 Download gff for
BS16595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4673-PA | 1..846 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:32:36 Download gff for
BS16595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 161..1012 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:55 Download gff for
BS16595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npl4-RA | 161..1012 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:55 Download gff for
BS16595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25622952..25623109 | 353..510 | 100 | <- | Minus |
| 3R | 25623172..25623405 | 119..352 | 100 | <- | Minus |
| 3R | 25623478..25623585 | 9..118 | 96 | | Minus |
| 3R | 25622539..25622890 | 511..862 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:32:36 Download gff for
BS16595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21448261..21448612 | 511..862 | 99 | <- | Minus |
| arm_3R | 21448674..21448831 | 353..510 | 100 | <- | Minus |
| arm_3R | 21448894..21449127 | 119..352 | 100 | <- | Minus |
| arm_3R | 21449200..21449307 | 9..118 | 96 | | Minus |
BS16595.pep Sequence
Translation from 16 to 1974
> BS16595.pep
MACAPLLLEQFIYKKRNFAYAFVRHRLFVLCKQSLIRVQSAEGIKRIEIS
PKSNLKHLYDSVQNALKVDGFGLFKERNFLTELQASGSQLVGTSLRHGDM
VYLKQMAGTSSRRTSTTVLDSQAFKTSTISNPNSARPSFNVIEDDVDQAL
SKADGTIKRERDSKLCHHNANGRCVHCSALEPYDESYLKEHNIKHLSFHS
YIRKQTSGMDQGKYFVFDDINCRIKPGCREHPPWPKGICSKCQPSAITLN
RQTYRHVDNVMFENTKIVERFLNYWRTTGHQRMGYLYGTYEQHTDVPLGI
RAKVAAIYEPPQESTRDSINIQPDEFADDVDAVASALGLKKIGWIFTDLI
TDDASIGTVKQIRGIESHFITAQECITAGELQNRHPNPCKYASNGVFGSK
FVTICVTGDKTKQVHMEGYAVSAQCMALVRDNCLIPTKDAPELGYVREST
DKQYVPDVFYKEKDLYGNEVQRLARPLPVEYLLVDVPASTPLQPIYTFTE
YDKRQPFPIENRYIDGHLQDFNALSCYLSAWGEEEFLEAISDFHLLVYLY
KMDMLPLRQHMGPLLEAVRTKNPNQAAQFKVVDVWKLLESLIQASSGGSG
GTTSYPSGGASASAGASGSEAMDLDANTWTCNHCTFINRGELTSCEICSL
PR*
BS16595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npl4-PA | 652 | CG4673-PA | 1..652 | 1..652 | 3459 | 100 | Plus |
| Npl4-PD | 624 | CG4673-PD | 7..624 | 35..652 | 3280 | 100 | Plus |
| Npl4-PB | 624 | CG4673-PB | 7..624 | 35..652 | 3280 | 100 | Plus |
