Clone Sequence Records
BS16596.3prime Sequence
587 bp (520 high quality bases) assembled on 2007-05-15
> BS16596.3prime
ATGGTCTAGAAAGCTTCTAAAGTTCAGCACGTCTCAAGCCGCAATCCATG
CAGAACTTGGCGGTCTCGAATATGAACTTGGAGCCACATTCGTAGCAGTA
ATTGGACTTCTTACTTGAGCTCATGGACGAGGTGCTCATCAATGAGTTCT
CTGACGTTGTGGGTGTCATCGGTACATTGTTGTTTGTTGTGTTGTAACCT
GTTGATGCTGGGATTTTAGCCTGCTGCTGCTGATGATGAAGCTGCTGCTG
CTCTTGATGGTAGTTGTAGTTGCAGTTCATTTGCTGCATCTGTTGCTGCT
GCATCTGTTGCTGCTGCTGCATCTGTTGCTGCTGCTGCATCTGCTGCTGC
TTCTGCATCTGCTGCTGCTTCTGCTGATCTTGCTGCAGTGGCTGTTGATA
GTTGTAGTTGATGTTCTGCTCCTGTTTTGGATTGGTTGCAAAAGAGTGTT
CGGATCCGCTACTGTACGACTCGCCTCCTTCGCCATTGTTGTTTCCACAT
TCGGGTGCAAAGAGACGCTGGCGAGCCTTCAAGGTGCCATAATCAGTGTG
TGCCTGCGTGGAAGCATCGATCATGCAGCTGGCCATC
BS16596.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-PB | 3399 | CG30460-RB | 2829..3399 | 587..17 | 2805 | 99.6 | Minus |
| CG30460-PC | 5607 | CG30460-RC | 5037..5607 | 587..17 | 2805 | 99.6 | Minus |
| CG30460-PA | 4563 | CG30460-RA | 3993..4563 | 587..17 | 2805 | 99.6 | Minus |
| CG30460-PD | 4209 | CG30460-RD | 3639..4209 | 587..17 | 2805 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RH | 4400 | CG30460-RH | 3019..3590 | 587..16 | 2830 | 99.7 | Minus |
| CG30460-RG | 5346 | CG30460-RG | 3965..4536 | 587..16 | 2830 | 99.7 | Minus |
| CG30460-RF | 6303 | CG30460-RF | 4922..5493 | 587..16 | 2830 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17066781..17067352 | 16..587 | 2830 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:27:14 has no hits.
BS16596.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:48 Download gff for
BS16596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-PD | 3639..4209 | 17..587 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:22 Download gff for
BS16596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RF | 4922..5495 | 11..587 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:20:58 Download gff for
BS16596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RF | 4922..5495 | 11..587 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:20:58 Download gff for
BS16596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17066779..17067352 | 11..587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:22 Download gff for
BS16596.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12954284..12954857 | 11..587 | 99 | | Plus |
BS16596.complete Sequence
3431 bp assembled on 2010-07-15
GenBank Submission: KX805765
> BS16596.complete
GAAGTTATCAGTCGACATGGTGCGCTCCACTGCCCGAGCCTCGTTGCGCA
AGGCAGCATCCACACTTTCGTCTAACTCGACACCGGAGGCTCCAGCTATG
GCACCCGCTGCTTCGACTGCTCCAGCTGCTCCGGCTGCTCCAGCTGCTCC
AGCTGCTCCTCTTGTCCGCGAACGATCGCTGGCCAAGCGGATCAAGGCAC
CTCCCTGTGATCGTTGTCCCCACTGCGATCGTACCTTTAATCCCAAGGCA
TTTGATCGCCACGTAGAATGGTGTAAGGAAAAGGCCATTCAGGCCACCAT
GAAGTCCACCAACAGCCAGGAGACCAGCAAAGCCAAGGAGCGCCTGGAGG
CCAGGAAGCAGTACAGGCCGCCCAATCTGAAGACCAAGAGATCCCTCGCC
AGGGATAAGTACTCCGGTAACCACGAGGAGGTTCTGGAAGCGGGTGAGAT
GACAACACCCAAACCAAACCTGATGTCCCATTCGATGACGTCGTCCGTGC
ACAGTGATAACGGCCTGGGGGACAAATACGATCCCTTCCTCTCGGCCAAG
CGGCAGCTTGAGGAGCTTTGCTCACCCAGCACGCCGCCGCCAGAGGAAGA
GGTGATCACCACCAAATCTACTAGAACATTGACACCCACAGCAACCAGCA
CACCCACAGCCACACCCAGTATCGCCATGACCACTTCATTGACTACGGCA
GTCGGTAAGCCCGCACAGGTTACCCAAAAGACCACTCCGACTTCCAATTT
TCGACGTACTTCATCGCTGAGAGGGCCACGTCGTACGCCCATGCTGAACA
GCCGACCGTTGTTTGCCACCAACTATCGCCCCACCATTCAGCGGGGTCTC
TCCGATGAGGGACCCATCTCCACCAACTTCCTCAAACCAGAGGAGTTCGA
CGAGATGCCGGTAAGAGCTGCATGCGGTAATGACTTCCACAGCCCAAGAG
TCGTGCGCCGGGATACGAGTGCCTCCAACCGAAAGCAATTGCTTAAATTG
CCCGTGGGTGGAACCAGTGAAGCCAGCAATGCACCCTCCTCTCCTCAGGC
CGCCCGCAGTGTGGCCAAAACTGACTCTCTGGCTGTGTTCCTCAAGTACG
AGCACGAGCTGGAGCAGCTGAATGCCAAGGCGGCTGAGCTGGCAGCCGCC
AGCCAGTTGACCAGCAAGGAGCAAAAGGATAAAAGCAACACGCTGAGCAA
ACAGAACTCTGCGAAGAGCTTGGGACACAGTACTCCCACACAGTTGCCAC
CATTAACTACAACAACGGTGCCCGTTTCGCCAGGTTTGGTTAAAGAGGTC
AACTATCCACCGGTGGCCACTCCGCTCCGATTGGAGCCCATCAGCAAGGT
GGCGAAGAACTCACCAGCACCCCTTACGCCTATCAAGCTGGAAAGCATCT
TTGGACCAAAGAGGGAAACGGGTCTGGGGTCAGGATCGGGCTCTGTGGCA
GGCGACTACATAGATCCCAAGCTGATAAACGCCTTTGATAATTTACATGT
TAACAGTGGTATATCCTCGGATACCAGCTCCACGCCCCAGCAGTTGTCCC
AAAGCCGAAGCAGGAGTAGCTCCCAGTCCACCATCACCCACGAACGGAGG
CAATCCGGTGAGGCCAGGAACCTGCTGAAGCGGAAGATGCGATTGGGACG
GAACCAGTTTCTGTACGATGCCTCGCCAGAGGATGCGGATGCTTCATCGG
GCTGCTCGGCAGACGATGAGGCCAACCGCTCGTCCATGGAGTACGACGAA
CAGTGCTGGCAGCAACAGCAGAAACAGCTATTGGCCAATCCGCTGCCGCT
GGTCATGCCCATGGTGCACAACGCCATGCCCACCTTCGATGATTTTGACT
TCGAGGAGTTCCTCTCCTCATTCGAGAACGAGAATGACGACGAGCAATTC
CCGCTGTTCAAGGACTGTCGCGAATTCCTCATGAATCGCTCGACGAGCAG
ACAACGCTCGTTCCAGAAAGCGACTTCGACGCAACAGACGACAGCCACAC
AGATAACACCACTTAGTCACCAGTCCAAGATTAAAGACAATCACGCCCAC
AGGTCTGATTCAAAAATGCCCGAGGACAAGCTGCAACGGCAGCAGTCGAA
TGCCTCCAATGCCAGCAGCCAGGAGGAGAAGAGCCGCCAGGAGACGGAGA
AACGGCCGGCCGACGATGATCAACGGAAGCGAGAGATTTTTATTAGCATT
GAGACGGAGGCCAATGCTCAGGGGCGCTCACCCATTTCGCCCGATTCACT
GCGCCACATGGTGGGCAATGCCCAGACGCACATCGATGTCCTGCACATTG
AAAACGGAAACGAGCCGGAACACGCAAGATTTAGCAAGATCAGCGACACG
GAGGACGCCGGAAACGAGCCCAGGGATCAGGCCAGCCAATCTACTAACCG
GCTGACCCCATCCTCGAGCGGATCCGGATTGGCGCCCAACGTGCAGCTGA
ACAATGCCAAGAATCTGATCCAGCAGATGCATAGCGAATTTCGGCTTATG
GGCGAGGAGGCCAGTGCCTCCATGCGGCGCCAGCTTATCGGAAGTAGCGG
CGGTAGAGGCGAGGAAGCGCAGCGCTCCAGTAGTGGGCTCCCTGCTCCAA
ATCCAACACACCAGGTCGTGGCCAGCTCACCGTCGGCGGATTCAGATGAG
TTAAGCAGTCTCGATGGCTATCCCATGTCCTCGTCGCAGGGTTCACGTCG
GGGAGCCAGCTCCAAGCTAAGCACGGATTCAGCATACGGCAGCAGCAACT
CACCTTATAGCTTGTCGCGACAACGCTCCTCTGAACTCCAAGCCGGCACA
CTACAGTCCCAGGGATTGATGCGTCCACATACGGCCAGTGCCAAGATGGC
CAGCTGCATGATCGATGCCTCCACGCAGGCACACACTGATTATGGCACCC
TGAAGGCTCGCCAGCGTCTCTTTGCACCCGAATGTGGAAACAACAATGGC
GAAGGAGGCGAGTCGTACAGTAGCGGATCCGAACACTCTTTTGCAACCAA
TCCAAAACAGGAGCAGAACATCAACTACAACTATCAACAGCCACTGCAGC
AAGATCAGCAGAAGCAGCAGCAGATGCAGAAGCAGCAGCAGATGCAGCAG
CAGCAACAGATGCAGCAGCAGCAACAGATGCAGCAGCAACAGATGCAGCA
AATGAACTGCAACTACAACTACCATCAAGAGCAGCAGCAGCTTCATCATC
AGCAGCAGCAGGCTAAAATCCCAGCATCAACAGGTTACAACACAACAAAC
AACAATGTACCGATGACACCCACAACGTCAGAGAACTCATTGATGAGCAC
CTCGTCCATGAGCTCAAGTAAGAAGTCCAATTACTGCTACGAATGTGGCT
CCAAGTTCATATTCGAGACCGCCAAGTTCTGCATGGATTGCGGCTTGAGA
CGTGCTGAACTTTAGAAGCTTTCTAGACCAT
BS16596.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RG | 4443 | CG30460-PG | 1045..4443 | 17..3415 | 16995 | 100 | Plus |
| CG30460-RB | 3399 | CG30460-PB | 1..3399 | 17..3415 | 16995 | 100 | Plus |
| CG30460-RF | 5400 | CG30460-PF | 2492..5400 | 507..3415 | 14530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-RG | 5346 | CG30460-RG | 1137..4536 | 17..3416 | 17000 | 100 | Plus |
| CG30460-RB | 4368 | CG30460-RB | 569..3968 | 17..3416 | 17000 | 100 | Plus |
| CG30460-RF | 6303 | CG30460-RF | 2584..5493 | 507..3416 | 14535 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17067526..17069757 | 2742..511 | 11160 | 100 | Minus |
| 2R | 25286936 | 2R | 17066781..17067456 | 3416..2741 | 3380 | 100 | Minus |
| 2R | 25286936 | 2R | 17071971..17072336 | 382..17 | 1830 | 100 | Minus |
| 2R | 25286936 | 2R | 17071727..17071855 | 510..382 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:36:32 has no hits.
BS16596.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:24 Download gff for
BS16596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RE | 574..1069 | 17..511 | 99 | <- | Plus |
| CG30460-RE | 2233..5136 | 512..3415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:05 Download gff for
BS16596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RB | 569..3967 | 17..3415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:22 Download gff for
BS16596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30460-RB | 569..3967 | 17..3415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:22 Download gff for
BS16596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17071972..17072336 | 17..381 | 100 | | Minus |
| 2R | 17066782..17067454 | 2743..3415 | 100 | <- | Minus |
| 2R | 17067526..17069757 | 511..2742 | 100 | <- | Minus |
| 2R | 17071727..17071855 | 382..510 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:05 Download gff for
BS16596.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12959232..12959360 | 382..510 | 100 | <- | Minus |
| arm_2R | 12955031..12957262 | 511..2742 | 100 | <- | Minus |
| arm_2R | 12954287..12954959 | 2743..3415 | 100 | <- | Minus |
| arm_2R | 12959477..12959841 | 17..381 | 100 | | Minus |
BS16596.pep Sequence
Translation from 16 to 3414
> BS16596.pep
MVRSTARASLRKAASTLSSNSTPEAPAMAPAASTAPAAPAAPAAPAAPLV
RERSLAKRIKAPPCDRCPHCDRTFNPKAFDRHVEWCKEKAIQATMKSTNS
QETSKAKERLEARKQYRPPNLKTKRSLARDKYSGNHEEVLEAGEMTTPKP
NLMSHSMTSSVHSDNGLGDKYDPFLSAKRQLEELCSPSTPPPEEEVITTK
STRTLTPTATSTPTATPSIAMTTSLTTAVGKPAQVTQKTTPTSNFRRTSS
LRGPRRTPMLNSRPLFATNYRPTIQRGLSDEGPISTNFLKPEEFDEMPVR
AACGNDFHSPRVVRRDTSASNRKQLLKLPVGGTSEASNAPSSPQAARSVA
KTDSLAVFLKYEHELEQLNAKAAELAAASQLTSKEQKDKSNTLSKQNSAK
SLGHSTPTQLPPLTTTTVPVSPGLVKEVNYPPVATPLRLEPISKVAKNSP
APLTPIKLESIFGPKRETGLGSGSGSVAGDYIDPKLINAFDNLHVNSGIS
SDTSSTPQQLSQSRSRSSSQSTITHERRQSGEARNLLKRKMRLGRNQFLY
DASPEDADASSGCSADDEANRSSMEYDEQCWQQQQKQLLANPLPLVMPMV
HNAMPTFDDFDFEEFLSSFENENDDEQFPLFKDCREFLMNRSTSRQRSFQ
KATSTQQTTATQITPLSHQSKIKDNHAHRSDSKMPEDKLQRQQSNASNAS
SQEEKSRQETEKRPADDDQRKREIFISIETEANAQGRSPISPDSLRHMVG
NAQTHIDVLHIENGNEPEHARFSKISDTEDAGNEPRDQASQSTNRLTPSS
SGSGLAPNVQLNNAKNLIQQMHSEFRLMGEEASASMRRQLIGSSGGRGEE
AQRSSSGLPAPNPTHQVVASSPSADSDELSSLDGYPMSSSQGSRRGASSK
LSTDSAYGSSNSPYSLSRQRSSELQAGTLQSQGLMRPHTASAKMASCMID
ASTQAHTDYGTLKARQRLFAPECGNNNGEGGESYSSGSEHSFATNPKQEQ
NINYNYQQPLQQDQQKQQQMQKQQQMQQQQQMQQQQQMQQQQMQQMNCNY
NYHQEQQQLHHQQQQAKIPASTGYNTTNNNVPMTPTTSENSLMSTSSMSS
SKKSNYCYECGSKFIFETAKFCMDCGLRRAEL*
BS16596.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30460-PG | 1480 | CG30460-PG | 349..1480 | 1..1132 | 5821 | 100 | Plus |
| CG30460-PB | 1132 | CG30460-PB | 1..1132 | 1..1132 | 5821 | 100 | Plus |
| CG30460-PF | 1799 | CG30460-PF | 758..1799 | 89..1132 | 4983 | 93.6 | Plus |
| CG30460-PE | 1711 | CG30460-PE | 670..1711 | 89..1132 | 4983 | 93.6 | Plus |
| CG30460-PD | 1402 | CG30460-PD | 361..1402 | 89..1132 | 4983 | 93.6 | Plus |
| CG30460-PF | 1799 | CG30460-PF | 280..494 | 1..204 | 865 | 82.3 | Plus |
| CG30460-PE | 1711 | CG30460-PE | 192..406 | 1..204 | 865 | 82.3 | Plus |
