Clone BS16604 Report

Search the DGRC for BS16604

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG31036-RA
Protein status:BS16604.pep: full length peptide match
Sequenced Size:3056

Clone Sequence Records

BS16604.3prime Sequence

867 bp (862 high quality bases) assembled on 2007-05-15

> BS16604.3prime
ATGGTCTAGAAAGCTTCTACTCCTGCTGTTGCTTGAACTTTCGTAGCTCG
GACTGTATGGCCTCGATAAGGGGTGCAGTTCCCGTTCTACTGCCCGATGG
AGCAGTCGCATCCAATCGGGCCTCCATCCTCTGGAAGGGTCCTGCGCTCA
CTGGACGATTCAGGGTGGAGTGGGAGCTGTACATACTCCCACCTCCCCAG
GCACTGTAAGTAGGCGACGGAGGTTGCGTCGAGTGCGCCGACTTGGACGT
CTTCTCCGGCTGAGCGGTTGCCGGACGTTCAGCTAAGCTCTTGGGTTCCG
CCGAAGGATGAAAGCTCGGCAATCCCGCAGATGAGCCCCTGTGCTCGCGC
TTCGTAGCCCTCCGGTTGTTGGTGAAATTCTGGGTGGGCAGGGGCATGGG
TATGTCGTCCTGGCTGGAGTACATCTGCAGGGCTCCCTCCAGAAGCCCCT
CGTAGTGGTTTCTAATGGCCGACGGATTGTGCAGCGGACTGGGGTTGTAG
TCGGCATAGGTCTGGGCCTCCTGCGTCTGTTTCTTCTTGTGCCGCTCCCA
GACCACGGGACCCACGACTCCCGGATCCGGATTGTCGCTGTGCGAGGCGG
AGCGGACATTCCTCACCGACGGCGGTGCCTTGGGACTGGGAAAACTGGCG
ATAGTGGCAATGGTGTTGTCCTTGCTGCCCTGCGACTTGTGGGATCGCAG
GGATCTTGTGGAGTTGTGAGGCGCCACTGCGTTCACGTTGTCGTAGTANG
TGACGAAGACGGGATCCAGTACGCGGTTCAGTGGTTCCGGCAGAGTACTC
TTGGGAAAGGCCCGGACCGAGGCCATCGACAGGAAGGATCCCACACTGGC
CGTATCCGACTTGTCGG

BS16604.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-PA 3024 CG31036-RA 2174..3024 867..17 4236 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-RD 3319 CG31036-RD 2358..3209 867..16 4249 99.9 Minus
CG31036-RA 3322 CG31036-RA 2361..3212 867..16 4249 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29911600..29911947 867..520 1729 99.7 Minus
3R 32079331 3R 29912482..29912782 316..16 1505 100 Minus
3R 32079331 3R 29912221..29912426 520..315 1030 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:10:11 has no hits.

BS16604.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:36 Download gff for BS16604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-PA 2174..3024 17..867 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:05 Download gff for BS16604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 2361..3214 13..867 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:32 Download gff for BS16604.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 2361..3214 13..867 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:32 Download gff for BS16604.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29911600..29911947 520..867 99 -> Minus
3R 29912222..29912426 315..519 100 -> Minus
3R 29912484..29912784 13..314 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:05 Download gff for BS16604.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25737322..25737669 520..867 99 -> Minus
arm_3R 25737944..25738148 315..519 100 -> Minus
arm_3R 25738206..25738506 13..314 99   Minus

BS16604.5prime Sequence

874 bp (728 high quality bases) assembled on 2007-05-15

> BS16604.5prime
GAAGTTATCAGTCGACATGAAAGCAAATCCCGCGATTCTGCTCATTTCCT
TCTCGCTTCTGGCCTTCCAATCCAATTGTGTAGCTACGCAAAAGTCGCAG
CTTGGTCAGCCGCTTATACAATTGAGTCACGACAACAACGACGATGACTA
TCCAGAAGTTAAGGACGAAATTCACTTGGAAGACTTCTTTTGGACTGGCT
CGGGGGATGGGCCACCGGATTTTCTGAAGAAGGTGCACACGGGGATTACC
AAGGGCAAGGAAACAGTTTTCAAGACCGAAACGGTGGTGGCCACCATCTA
TGTGGATGGAAATAATGAGATCGACATACCCATTTGTCTGGACTGCAAGC
CAGATGATGGCGGCGGCACCTGGGACATGGGTGGCCCAGGAATGCCTCCT
CTGAACTACTCCGCCACGGACCGACGTTATTGGCTGCTGACCGTCATGTC
GGGATTCTATACGGCCAAGGATAATCCCACGTTGGAGGAGAAGCTGGCAC
GGCTATATCGTCTGGCTTTTACCAGACAACAAACCAGGCACCTTGGCATT
AATGGAGCTCAACAAATCGAAGGGGTTAACCTACCGGCACCTCGAGAACG
TCGAAAGTCTTTGACGCTACCGACGAGAGTGGAAACCACGACGGGATCGC
CAGCAGATGATGTCGAAATACTGGACATGCAGGATGAGGACGAGCAGCAC
TACATAAAGAGTGTGAGGCGACTGGGCGAAGACACCGAGTGGGCCAGCCA
CTCGCAGGAGGAGCANGAGCAGGAGCAGTCCGAGGAGCAGCTCCCATTGG
GGGTCACACCCTCGACCAGCACGGAATCGATAGAATATGGAGCATACGTT
ACTCTGATCCCCTGGGAGCTCATA

BS16604.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-PA 3024 CG31036-RA 1..858 17..874 4246 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-RD 3319 CG31036-RD 188..1045 17..874 4264 99.8 Plus
CG31036-RA 3322 CG31036-RA 188..1045 17..874 4264 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29909658..29910008 524..874 1729 99.4 Plus
3R 32079331 3R 29909394..29909602 317..525 1045 100 Plus
3R 32079331 3R 29909149..29909335 131..317 935 100 Plus
3R 32079331 3R 29908294..29908408 17..131 575 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:37:11 has no hits.

BS16604.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:57 Download gff for BS16604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-PA 1..857 17..873 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:33 Download gff for BS16604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 180..1044 9..873 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:04 Download gff for BS16604.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 180..1044 9..873 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:04 Download gff for BS16604.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29908286..29908408 9..131 97 -> Plus
3R 29909150..29909334 132..316 100 -> Plus
3R 29909394..29909602 317..525 100 -> Plus
3R 29909660..29910007 526..873 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:33 Download gff for BS16604.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25734008..25734130 9..131 97 -> Plus
arm_3R 25734872..25735056 132..316 100 -> Plus
arm_3R 25735116..25735324 317..525 100 -> Plus
arm_3R 25735382..25735729 526..873 99   Plus

BS16604.complete Sequence

3056 bp assembled on 2010-05-12

GenBank Submission: KX802622

> BS16604.complete
GAAGTTATCAGTCGACATGAAAGCAAATCCCGCGATTCTGCTCATTTCCT
TCTCGCTTCTGGCCTTCCAATCCAATTGTGTAGCTACGCAAAAGTCGCAG
CTTGGTCAGCCGCTTATACAATTGAGTCACGACAACAACGACGATGACTA
TCCAGAAGTTAAGGACGAAATTCACTTGGAAGACTTCTTTTGGACTGGCT
CGGGGGATGGGCCACCGGATTTTCTGAAGAAGGTGCACACGGGGATTACC
AAGGGCAAGGAAACAGTTTTCAAGACCGAAACGGTGGTGGCCACCATCTA
TGTGGATGGAAATAATGAGATCGACATACCCATTTGTCTGGACTGCAAGC
CAGATGATGGCGGCGGCACCTGGGACATGGGTGGCCCAGGAATGCCTCCT
CTGAACTACTCCGCCACGGACCGACGTTATTGGCTGCTGACCGTCATGTC
GGGATTCTATACGGCCAAGGATAATCCCACGTTGGAGGAGAAGCTGGCAC
GGCTATATCGTCTGGCTTTTACCAGACAACAAACCAGGCACCTTGGCATT
AATGGAGCTCAACAAATCGAAGGGGTTAACCTACCGGCACCTCGAGAACG
TCGAAAGTCTTTGACGCTACCGACGAGAGTGGAAACCACGACGGGATCGC
CAGCAGATGATGTCGAAATACTGGACATGCAGGATGAGGACGAGCAGCAC
TACATAAAGAGTGTGAGGCGACTGGGCGAAGACACCGAGTGGGCCAGCCA
CTCGCAGGAGGAGCAGGAGCAGGAGCAGTCCGAGGAGCAGCTCCCATTGG
GGGTCACACCCTCGACCAGCACGGAATCGATAGATTATGGAGCATACGTT
ACTCTGATCCCCTGGGAGCTCATACAGCAGAATGGGAAATCGGAAAAGTT
GCGGGAAATGCACGAAACCTTGTTGACTAAGCAACCGCCGGTGCAACAAC
AACAGGAACAACAACAGGGGGCGCAACCACCACCCCAGACCCATCCCCAA
AGCCTTCCCCATTCCCAGTCCCAGTCCCAGCCACTTTATAGGGACGAGCA
CGTCAGAGTTGTCATACACAACCTAACACAAATTAGCGAGGCGGATGTGC
AAAAGTGGAGCACCAACACCAATGGGTTCGGTACCATGGAGGAGCACAAC
TACGTCAACCTCAAATTCAGCAATGATCGACCGATAGCCAACCAAACGGA
GCTGATTTACACGGTTCTGGTGAATGGTCGACCTGTTTTGGCCACAACAG
CAGCAAAGGACATGGAACTGGTCAGTGAATCCGAAGCGGTGAAGACATTT
GGACAGGCCGTATATATGAAATCTGAACCCTACATCAGGGAGCCCACGGC
AACCGCTTTGGCTCCTGTTCCTCGAAGTGGACAGGCTGGATTCTTTAACT
CGGTCAAAAACAACGTGGCCCTGGTTGTCATCAGTTCTTTGGCCATACTG
CTGCTGATGCTGCTCCTCGTGGCGGTTCTACTCCTGGGACGAACCCGATC
CCGGCAAAGAGAACTTAGTGCAGTCAACAGAAACTCCTCCCGCAACGAAC
TCCTCTCCGATGGTCAATCAATGCGACCTACGACTAGTGAGAGGACCGAA
GGAGAACCAAGTCCAGGACATTCCCAATCCCGGGAGGCAGGAGTAAGGAA
CTTCTCCTACGAAAGGGAGCCACGCATCAGTTTCCCAGCTCCGCCGCAGG
AGACACGATCCCGTCGAGAGTCCATTTCCTCGTCCACGGACAACACTTCC
GATTCCTCCGTTTACTGCCCTATCAATCCGCCGAGTGCCGATGTCCAAAG
GATCCTGGACGACAAGGCTGCCCGCTTGTTTGACGCCCATAAGAGGCGTC
ATCAGTACGATCGAGCCGAAGGTCACGAGGAAACCGTTTACACATCCGTG
GTGTCGGAGAAGAAGAGCGACAAAATGCGACACAAGTCCAGAAGGCGCTA
CCTGAACGAGAACCGAGTGGGCTCCTTGGAGACGAGTCCGGTCCAAGGTT
CCCTGGCGGGTCATTCCTCCGCTGAGGAGTCCCCCGAAGTTATGCGCCGG
AGCTACGAGAACTTCCAACGAAGCGAAGCCTTCAATCCGCACAACAACTA
CCACCGGAACAAGTTGCTGACCCAAAAAACCGGCAGAGGGGCGTCCGCCG
AGGCCATCAACAGCGAGATGATCCGGAATATTCAGCCATCCGACAAGTCG
GATACGGCCAGTGTGGGATCCTTCCTGTCGATGGCCTCGGTCCGGGCCTT
TCCCAAGAGTACTCTGCCGGAACCACTGAACCGCGTACTGGATCCCGTCT
TCGTCACCTACTACGACAACGTGAACGCAGTGGCGCCTCACAACTCCACA
AGATCCCTGCGATCCCACAAGTCGCAGGGCAGCAAGGACAACACCATTGC
CACTATCGCCAGTTTTCCCAGTCCCAAGGCACCGCCGTCGGTGAGGAATG
TCCGCTCCGCCTCGCACAGCGACAATCCGGATCCGGGAGTCGTGGGTCCC
GTGGTCTGGGAGCGGCACAAGAAGAAACAGACGCAGGAGGCCCAGACCTA
TGCCGACTACAACCCCAGTCCGCTGCACAATCCGTCGGCCATTAGAAACC
ACTACGAGGGGCTTCTGGAGGGAGCCCTGCAGATGTACTCCAGCCAGGAC
GACATACCCATGCCCCTGCCCACCCAGAATTTCACCAACAACCGGAGGGC
TACGAAGCGCGAGCACAGGGGCTCATCTGCGGGATTGCCGAGCTTTCATC
CTTCGGCGGAACCCAAGAGCTTAGCTGAACGTCCGGCAACCGCTCAGCCG
GAGAAGACGTCCAAGTCGGCGCACTCGACGCAACCTCCGTCGCCTACTTA
CAGTGCCTGGGGAGGTGGGAGTATGTACAGCTCCCACTCCACCCTGAATC
GTCCAGTGAGCGCAGGACCCTTCCAGAGGATGGAGGCCCGATTGGATGCG
ACTGCTCCATCGGGCAGTAGAACGGGAACTGCACCCCTTATCGAGGCCAT
ACAGTCCGAGCTACGAAAGTTCAAGCAACAGCAGGAGTAGAAGCTTTCTA
GACCAT

BS16604.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-RA 3024 CG31036-PA 1..3024 17..3040 15105 100 Plus
CG31036-RD 3021 CG31036-PD 1..3021 17..3040 15025 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-RA 3322 CG31036-RA 188..3212 17..3041 15110 100 Plus
CG31036-RD 3319 CG31036-RD 188..3209 17..3041 15030 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29910938..29911947 1528..2537 5035 99.9 Plus
3R 32079331 3R 29909658..29910301 524..1167 3220 100 Plus
3R 32079331 3R 29912482..29912782 2741..3041 1505 100 Plus
3R 32079331 3R 29909394..29909602 317..525 1045 100 Plus
3R 32079331 3R 29912221..29912426 2537..2742 1030 100 Plus
3R 32079331 3R 29910669..29910870 1329..1530 1010 100 Plus
3R 32079331 3R 29909149..29909335 131..317 935 100 Plus
3R 32079331 3R 29910444..29910604 1168..1328 805 100 Plus
3R 32079331 3R 29908294..29908408 17..131 575 100 Plus
Blast to na_te.dros performed 2014-11-28 02:04:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2324..2430 874..983 155 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2839 930..981 125 71.2 Plus

BS16604.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:57 Download gff for BS16604.complete
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 186..3209 17..3040 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:11 Download gff for BS16604.complete
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 188..3211 17..3040 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:11 Download gff for BS16604.complete
Subject Subject Range Query Range Percent Splice Strand
CG31036-RA 188..3211 17..3040 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:11 Download gff for BS16604.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29908294..29908408 17..131 100 -> Plus
3R 29909150..29909334 132..316 100 -> Plus
3R 29909394..29909602 317..525 100 -> Plus
3R 29909660..29910301 526..1167 100 -> Plus
3R 29910444..29910604 1168..1328 100 -> Plus
3R 29910669..29910870 1329..1530 100 -> Plus
3R 29910941..29911947 1531..2537 99 -> Plus
3R 29912222..29912426 2538..2742 100 -> Plus
3R 29912484..29912781 2743..3040 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:11 Download gff for BS16604.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25734016..25734130 17..131 100 -> Plus
arm_3R 25734872..25735056 132..316 100 -> Plus
arm_3R 25735116..25735324 317..525 100 -> Plus
arm_3R 25735382..25736023 526..1167 100 -> Plus
arm_3R 25736166..25736326 1168..1328 100 -> Plus
arm_3R 25736391..25736592 1329..1530 100 -> Plus
arm_3R 25736663..25737669 1531..2537 99 -> Plus
arm_3R 25737944..25738148 2538..2742 100 -> Plus
arm_3R 25738206..25738503 2743..3040 100   Plus

BS16604.pep Sequence

Translation from 16 to 3039

> BS16604.pep
MKANPAILLISFSLLAFQSNCVATQKSQLGQPLIQLSHDNNDDDYPEVKD
EIHLEDFFWTGSGDGPPDFLKKVHTGITKGKETVFKTETVVATIYVDGNN
EIDIPICLDCKPDDGGGTWDMGGPGMPPLNYSATDRRYWLLTVMSGFYTA
KDNPTLEEKLARLYRLAFTRQQTRHLGINGAQQIEGVNLPAPRERRKSLT
LPTRVETTTGSPADDVEILDMQDEDEQHYIKSVRRLGEDTEWASHSQEEQ
EQEQSEEQLPLGVTPSTSTESIDYGAYVTLIPWELIQQNGKSEKLREMHE
TLLTKQPPVQQQQEQQQGAQPPPQTHPQSLPHSQSQSQPLYRDEHVRVVI
HNLTQISEADVQKWSTNTNGFGTMEEHNYVNLKFSNDRPIANQTELIYTV
LVNGRPVLATTAAKDMELVSESEAVKTFGQAVYMKSEPYIREPTATALAP
VPRSGQAGFFNSVKNNVALVVISSLAILLLMLLLVAVLLLGRTRSRQREL
SAVNRNSSRNELLSDGQSMRPTTSERTEGEPSPGHSQSREAGVRNFSYER
EPRISFPAPPQETRSRRESISSSTDNTSDSSVYCPINPPSADVQRILDDK
AARLFDAHKRRHQYDRAEGHEETVYTSVVSEKKSDKMRHKSRRRYLNENR
VGSLETSPVQGSLAGHSSAEESPEVMRRSYENFQRSEAFNPHNNYHRNKL
LTQKTGRGASAEAINSEMIRNIQPSDKSDTASVGSFLSMASVRAFPKSTL
PEPLNRVLDPVFVTYYDNVNAVAPHNSTRSLRSHKSQGSKDNTIATIASF
PSPKAPPSVRNVRSASHSDNPDPGVVGPVVWERHKKKQTQEAQTYADYNP
SPLHNPSAIRNHYEGLLEGALQMYSSQDDIPMPLPTQNFTNNRRATKREH
RGSSAGLPSFHPSAEPKSLAERPATAQPEKTSKSAHSTQPPSPTYSAWGG
GSMYSSHSTLNRPVSAGPFQRMEARLDATAPSGSRTGTAPLIEAIQSELR
KFKQQQE*

BS16604.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG31036-PA 1007 CG31036-PA 1..1007 1..1007 5231 100 Plus
CG31036-PD 1006 CG31036-PD 1..1006 1..1007 5215 99.9 Plus