Clone BS16606 Report

Search the DGRC for BS16606

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptm-RA
Protein status:BS16606.pep: full length peptide match
Sequenced Size:2081

Clone Sequence Records

BS16606.3prime Sequence

913 bp (831 high quality bases) assembled on 2007-05-15

> BS16606.3prime
ATGGTCTAGAAAGCTTTCACTGGACCGTTTCGTGACCTGAACTCGGCTGC
CTCACTTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTG
TTGCATGTGTCGCAGGCGAAACAGTCGCAGGGTCATCCAGGAGGCCAGTG
TTCCGGTCACCGGCATGGGTGTCTGCTTCTCCAGCGCCTCCTTTTGCAGC
TGATAGCGATATAGCAGGGATCCGGCCACCAGAGCGGACACGATCGTTGT
CGAAATGACAACGATGAAGAGAATGCTGAAGCCGGGCACTGGCATACAAA
TGCCGTAGACAACCTCCTCGCTAATCTTGCCCTGGAACACGGTGACCGCC
TCCTGTTTGGAGTCCGGCGAGAAGGCCAAATCCGCCTCGGATATAACATC
GTACAGACCGCTGACGCCCACATCGGCACTGCGCACCTTGCGATCGGAAA
TGACCAACGAACGACGGCGACGGCTCTTGGAGGAATCATTGCTGGCTGCT
GCACCTCCTTCACCTGTCAGCTTATCCTCCTGCTGCGTTTTCTCTTCCTT
CTCCTTCTCCTCTTCCTCCTCCTTGTCCAAATCGATGTGATCCTCGCGTG
GCTGCTTCAACGCCTCCGCCTGTGGTCTGTAGACGGGTCGTGGCACATCC
TCATCGCCATGACCATGTGGCTCCAGGGAGCGGGGTCCCGCCATCGGTAC
ACCCATACGTTTCTGGGCCTCCAGCTGCCGTGGACCGTGTGGGAACTTGC
CGCTCTTCTTCAGACCCAAGTACCGCTCGCCCTCGCCGCCTTCCATGTCC
AAGTCGGCAAGATCCTCATCGCCAAATAGATCTGAAAGATCCGCCTCCTC
CTGTTCCTCGTGCACGGGTCGTGGCTGCAGATTACACTCTTCTCGTGACC
ATAATTCTCGCCA

BS16606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9369-PA 2049 m-RA 1182..2049 884..17 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 1595..2484 905..17 4425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11767698..11768587 905..17 4400 99.9 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:04 has no hits.

BS16606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:44 Download gff for BS16606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9369-PA 1153..2049 17..912 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:44 Download gff for BS16606.3prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 1588..2489 11..912 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:35 Download gff for BS16606.3prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 1588..2489 11..912 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:35 Download gff for BS16606.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11767691..11768592 11..912 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:44 Download gff for BS16606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11661724..11662625 11..912 99   Minus

BS16606.5prime Sequence

834 bp (832 high quality bases) assembled on 2007-05-15

> BS16606.5prime
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGA

BS16606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG9369-PA 2049 m-RA 1..818 17..834 4090 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 434..1253 15..834 4100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11767168..11767356 646..834 945 100 Plus
X 23542271 X 11766326..11766481 94..249 780 100 Plus
X 23542271 X 11766750..11766900 376..526 755 100 Plus
X 23542271 X 11766549..11766684 245..380 680 100 Plus
X 23542271 X 11766978..11767102 524..648 625 100 Plus
X 23542271 X 11763202..11763281 15..94 400 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:08:17 has no hits.

BS16606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:04 Download gff for BS16606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9369-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:35 Download gff for BS16606.5prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..1252 15..833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:58 Download gff for BS16606.5prime
Subject Subject Range Query Range Percent Splice Strand
m-RA 434..1252 15..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:58 Download gff for BS16606.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11763202..11763281 15..94 100 -> Plus
X 11766327..11766480 95..248 100 -> Plus
X 11766553..11766680 249..376 100 -> Plus
X 11766751..11766898 377..524 100 -> Plus
X 11766979..11767101 525..647 100 -> Plus
X 11767170..11767355 648..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:35 Download gff for BS16606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657235..11657314 15..94 100 -> Plus
arm_X 11660360..11660513 95..248 100 -> Plus
arm_X 11660586..11660713 249..376 100 -> Plus
arm_X 11660784..11660931 377..524 100 -> Plus
arm_X 11661012..11661134 525..647 100 -> Plus
arm_X 11661203..11661388 648..833 100   Plus

BS16606.complete Sequence

2081 bp assembled on 2009-12-07

GenBank Submission: KX805021

> BS16606.complete
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGATGCCCTCAGTGTGCAC
ATCAAGTGCAAGGTGGAGATTTGTCGCCACGGCTGTCTCGATCATTGCCA
GAACACGGGCGTGGGCGGTGGTGGCGGCGGATCCGGCGAGAGCCTGGGAT
TGGGTCTCGGCCTGGGACTGACCAATGCCAATGAGCGTAAGGATGTGCAC
ATGTCGGATGCCTTGGGCAGTAGCAGCAACGATCTGCTCAGGGATTTGGC
ACTGCCGCCGGGCGGTCAACACGGCATGGGCATGGGAATGGGTCCAGATC
ATGACATCTTCTACGAGGACATCATCCACGATCACAAACAAACGCTGGGC
GGCGGAGGAATGCCAGCTGGCGGAGATTATGGTCACGAGAAGAGTGTTAA
TCTGCAGCCACGACCCGTGCACGAGGAACAGGAGGAGGCGGATCTTTCAG
ATCTATTTGGCGATGAGGATCTTGCCGACTTGGACATGGAAGGCGGCGAG
GGCGAGCGGTACTTGGGTCTGAAGAAGAGCGGCAAGTTCCCACACGGTCC
ACGGCAGCTGGAGGCCCAGAAACGTATGGGTGTACCGATGGCGGGACCCC
GCTCCCTGGAGCCACATGGTCATGGCGATGAGGATGTGCCACGACCCGTC
TACAGACCACAGGCGGAGGCGTTGAAGCAGCCACGCGAGGATCACATCGA
TTTGGACAAGGAGGAGGAAGAGGAGAAGGAGAAGGAAGAGAAAACGCAGC
AGGAGGATAAGCTGACAGGTGAAGGAGGTGCAGCAGCCAGCAATGATTCC
TCCAAGAGCCGTCGCCGTCGTTCGTTGGTCATTTCCGATCGCAAGGTGCG
CAGTGCCGATGTGGGCGTCAGCGGTCTGTACGATGTTATATCCGAGGCGG
ATTTGGCCTTCTCGCCGGACTCCAAACAGGAGGCGGTCACCGTGTTCCAG
GGCAAGATTAGCGAGGAGGTTGTCTACGGCATTTGTATGCCAGTGCCCGG
CTTCAGCATTCTCTTCATCGTTGTCATTTCGACAACGATCGTGTCCGCTC
TGGTGGCCGGATCCCTGCTATATCGCTATCAGCTGCAAAAGGAGGCGCTG
GAGAAGCAGACACCCATGCCGGTGACCGGAACACTGGCCTCCTGGATGAC
CCTGCGACTGTTTCGCCTGCGACACATGCAACAGCAGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAACAACAAGTGAGGCAGCCGAGTTCAGGTCAC
GAAACGGTCCAGTGAAAGCTTTCTAGACCAT

BS16606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 2049 CG9369-PA 1..2049 17..2065 10245 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
m-RA 3405 CG9369-RA 434..2484 15..2065 10255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11767168..11768587 646..2065 7100 100 Plus
X 23542271 X 11766326..11766481 94..249 780 100 Plus
X 23542271 X 11766750..11766900 376..526 755 100 Plus
X 23542271 X 11766549..11766684 245..380 680 100 Plus
X 23542271 X 11766978..11767102 524..648 625 100 Plus
X 23542271 X 11763202..11763281 15..94 400 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:06:36 has no hits.

BS16606.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:42 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2483 17..2064 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:08 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2483 17..2064 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:56 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2483 17..2064 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:11 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
m-RA 436..2483 17..2064 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:11 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
X 11763204..11763281 17..94 100 -> Plus
X 11766327..11766480 95..248 100 -> Plus
X 11766553..11766680 249..376 100 -> Plus
X 11766751..11766898 377..524 100 -> Plus
X 11766979..11767101 525..647 100 -> Plus
X 11767170..11768586 648..2064 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:08 Download gff for BS16606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657237..11657314 17..94 100 -> Plus
arm_X 11660360..11660513 95..248 100 -> Plus
arm_X 11660586..11660713 249..376 100 -> Plus
arm_X 11660784..11660931 377..524 100 -> Plus
arm_X 11661012..11661134 525..647 100 -> Plus
arm_X 11661203..11662619 648..2064 100   Plus

BS16606.pep Sequence

Translation from 16 to 2064

> BS16606.pep
MWSPQKGPTRLWDLRFSSCIFILHLMFSLVIAGNELWPMERPDGMPNIVS
LEVMCGKDHMDVHLTFSHPFEGIVSSKGQHSDPRCVYVPPSTGKTFFSFR
ISYSRCGTKPDLNGQFYENTVVVQYDKDLLEVWDEAKRLRCEWFNDYEKT
ASKPPMVIADLDVIQLDFRGDNVDCWMEIQHGKGPWAPPVSGIVPLGSTL
TLVVAINDYRGEFDMRVKSCVASDGSGHVINLSDEFGCVLRPKMISRFLK
ARAPDERATVITYAFFHAFKFPDALSVHIKCKVEICRHGCLDHCQNTGVG
GGGGGSGESLGLGLGLGLTNANERKDVHMSDALGSSSNDLLRDLALPPGG
QHGMGMGMGPDHDIFYEDIIHDHKQTLGGGGMPAGGDYGHEKSVNLQPRP
VHEEQEEADLSDLFGDEDLADLDMEGGEGERYLGLKKSGKFPHGPRQLEA
QKRMGVPMAGPRSLEPHGHGDEDVPRPVYRPQAEALKQPREDHIDLDKEE
EEEKEKEEKTQQEDKLTGEGGAAASNDSSKSRRRRSLVISDRKVRSADVG
VSGLYDVISEADLAFSPDSKQEAVTVFQGKISEEVVYGICMPVPGFSILF
IVVISTTIVSALVAGSLLYRYQLQKEALEKQTPMPVTGTLASWMTLRLFR
LRHMQQQQQQQQQQQQQQQQVRQPSSGHETVQ*

BS16606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:35
Subject Length Description Subject Range Query Range Score Percent Strand
m-PA 682 CG9369-PA 1..682 1..682 3628 100 Plus
dy-PA 699 CG9355-PA 233..509 32..294 674 45.7 Plus
dyl-PC 611 CG15013-PC 71..376 35..326 672 41.8 Plus
dyl-PA 611 CG15013-PA 71..376 35..326 672 41.8 Plus
dyl-PB 611 CG15013-PB 71..376 35..326 672 41.8 Plus