Clone Sequence Records
BS16606.3prime Sequence
913 bp (831 high quality bases) assembled on 2007-05-15
> BS16606.3prime
ATGGTCTAGAAAGCTTTCACTGGACCGTTTCGTGACCTGAACTCGGCTGC
CTCACTTGTTGTTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTGCTG
TTGCATGTGTCGCAGGCGAAACAGTCGCAGGGTCATCCAGGAGGCCAGTG
TTCCGGTCACCGGCATGGGTGTCTGCTTCTCCAGCGCCTCCTTTTGCAGC
TGATAGCGATATAGCAGGGATCCGGCCACCAGAGCGGACACGATCGTTGT
CGAAATGACAACGATGAAGAGAATGCTGAAGCCGGGCACTGGCATACAAA
TGCCGTAGACAACCTCCTCGCTAATCTTGCCCTGGAACACGGTGACCGCC
TCCTGTTTGGAGTCCGGCGAGAAGGCCAAATCCGCCTCGGATATAACATC
GTACAGACCGCTGACGCCCACATCGGCACTGCGCACCTTGCGATCGGAAA
TGACCAACGAACGACGGCGACGGCTCTTGGAGGAATCATTGCTGGCTGCT
GCACCTCCTTCACCTGTCAGCTTATCCTCCTGCTGCGTTTTCTCTTCCTT
CTCCTTCTCCTCTTCCTCCTCCTTGTCCAAATCGATGTGATCCTCGCGTG
GCTGCTTCAACGCCTCCGCCTGTGGTCTGTAGACGGGTCGTGGCACATCC
TCATCGCCATGACCATGTGGCTCCAGGGAGCGGGGTCCCGCCATCGGTAC
ACCCATACGTTTCTGGGCCTCCAGCTGCCGTGGACCGTGTGGGAACTTGC
CGCTCTTCTTCAGACCCAAGTACCGCTCGCCCTCGCCGCCTTCCATGTCC
AAGTCGGCAAGATCCTCATCGCCAAATAGATCTGAAAGATCCGCCTCCTC
CTGTTCCTCGTGCACGGGTCGTGGCTGCAGATTACACTCTTCTCGTGACC
ATAATTCTCGCCA
BS16606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9369-PA | 2049 | m-RA | 1182..2049 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 1595..2484 | 905..17 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11767698..11768587 | 905..17 | 4400 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:04 has no hits.
BS16606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:44 Download gff for
BS16606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9369-PA | 1153..2049 | 17..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:44 Download gff for
BS16606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 1588..2489 | 11..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:35 Download gff for
BS16606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 1588..2489 | 11..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:35 Download gff for
BS16606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11767691..11768592 | 11..912 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:44 Download gff for
BS16606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11661724..11662625 | 11..912 | 99 | | Minus |
BS16606.5prime Sequence
834 bp (832 high quality bases) assembled on 2007-05-15
> BS16606.5prime
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGA
BS16606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9369-PA | 2049 | m-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 434..1253 | 15..834 | 4100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11767168..11767356 | 646..834 | 945 | 100 | Plus |
X | 23542271 | X | 11766326..11766481 | 94..249 | 780 | 100 | Plus |
X | 23542271 | X | 11766750..11766900 | 376..526 | 755 | 100 | Plus |
X | 23542271 | X | 11766549..11766684 | 245..380 | 680 | 100 | Plus |
X | 23542271 | X | 11766978..11767102 | 524..648 | 625 | 100 | Plus |
X | 23542271 | X | 11763202..11763281 | 15..94 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:08:17 has no hits.
BS16606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:04 Download gff for
BS16606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9369-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:35 Download gff for
BS16606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..1252 | 15..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:44:58 Download gff for
BS16606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 434..1252 | 15..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:44:58 Download gff for
BS16606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763202..11763281 | 15..94 | 100 | -> | Plus |
X | 11766327..11766480 | 95..248 | 100 | -> | Plus |
X | 11766553..11766680 | 249..376 | 100 | -> | Plus |
X | 11766751..11766898 | 377..524 | 100 | -> | Plus |
X | 11766979..11767101 | 525..647 | 100 | -> | Plus |
X | 11767170..11767355 | 648..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:35 Download gff for
BS16606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657235..11657314 | 15..94 | 100 | -> | Plus |
arm_X | 11660360..11660513 | 95..248 | 100 | -> | Plus |
arm_X | 11660586..11660713 | 249..376 | 100 | -> | Plus |
arm_X | 11660784..11660931 | 377..524 | 100 | -> | Plus |
arm_X | 11661012..11661134 | 525..647 | 100 | -> | Plus |
arm_X | 11661203..11661388 | 648..833 | 100 | | Plus |
BS16606.complete Sequence
2081 bp assembled on 2009-12-07
GenBank Submission: KX805021
> BS16606.complete
GAAGTTATCAGTCGACATGTGGAGCCCACAAAAAGGCCCTACACGACTGT
GGGACCTTAGGTTTAGTAGCTGTATATTTATCTTACACTTAATGTTTAGT
TTAGTCATAGCTGGTAATGAACTGTGGCCCATGGAACGGCCAGACGGAAT
GCCCAATATCGTCTCACTGGAGGTGATGTGCGGCAAGGATCACATGGATG
TACATCTCACCTTTTCGCATCCATTCGAGGGCATCGTCAGCTCCAAAGGA
CAACACAGCGATCCGCGTTGCGTTTATGTGCCGCCCTCAACGGGCAAGAC
GTTCTTCTCCTTCCGCATCTCGTACTCCCGCTGCGGCACCAAGCCGGATC
TCAACGGACAGTTCTATGAGAATACGGTGGTGGTTCAGTACGACAAGGAT
CTGCTGGAAGTCTGGGATGAGGCTAAGCGATTGCGATGCGAGTGGTTCAA
TGACTACGAGAAGACCGCCTCCAAGCCACCGATGGTCATTGCCGATCTCG
ATGTTATCCAACTGGATTTCCGTGGTGACAATGTGGACTGCTGGATGGAG
ATTCAGCATGGCAAGGGACCCTGGGCGCCGCCTGTTAGTGGAATTGTACC
ACTCGGCTCAACTTTAACCCTGGTGGTGGCCATCAATGATTATCGAGGCG
AATTCGATATGCGTGTGAAATCCTGCGTGGCCTCCGATGGATCTGGTCAT
GTGATCAACCTGTCCGATGAATTTGGCTGCGTGCTGCGACCCAAGATGAT
CTCACGCTTCCTGAAGGCTCGTGCGCCCGACGAGAGGGCCACCGTGATCA
CCTATGCCTTCTTCCATGCCTTCAAGTTCCCGGATGCCCTCAGTGTGCAC
ATCAAGTGCAAGGTGGAGATTTGTCGCCACGGCTGTCTCGATCATTGCCA
GAACACGGGCGTGGGCGGTGGTGGCGGCGGATCCGGCGAGAGCCTGGGAT
TGGGTCTCGGCCTGGGACTGACCAATGCCAATGAGCGTAAGGATGTGCAC
ATGTCGGATGCCTTGGGCAGTAGCAGCAACGATCTGCTCAGGGATTTGGC
ACTGCCGCCGGGCGGTCAACACGGCATGGGCATGGGAATGGGTCCAGATC
ATGACATCTTCTACGAGGACATCATCCACGATCACAAACAAACGCTGGGC
GGCGGAGGAATGCCAGCTGGCGGAGATTATGGTCACGAGAAGAGTGTTAA
TCTGCAGCCACGACCCGTGCACGAGGAACAGGAGGAGGCGGATCTTTCAG
ATCTATTTGGCGATGAGGATCTTGCCGACTTGGACATGGAAGGCGGCGAG
GGCGAGCGGTACTTGGGTCTGAAGAAGAGCGGCAAGTTCCCACACGGTCC
ACGGCAGCTGGAGGCCCAGAAACGTATGGGTGTACCGATGGCGGGACCCC
GCTCCCTGGAGCCACATGGTCATGGCGATGAGGATGTGCCACGACCCGTC
TACAGACCACAGGCGGAGGCGTTGAAGCAGCCACGCGAGGATCACATCGA
TTTGGACAAGGAGGAGGAAGAGGAGAAGGAGAAGGAAGAGAAAACGCAGC
AGGAGGATAAGCTGACAGGTGAAGGAGGTGCAGCAGCCAGCAATGATTCC
TCCAAGAGCCGTCGCCGTCGTTCGTTGGTCATTTCCGATCGCAAGGTGCG
CAGTGCCGATGTGGGCGTCAGCGGTCTGTACGATGTTATATCCGAGGCGG
ATTTGGCCTTCTCGCCGGACTCCAAACAGGAGGCGGTCACCGTGTTCCAG
GGCAAGATTAGCGAGGAGGTTGTCTACGGCATTTGTATGCCAGTGCCCGG
CTTCAGCATTCTCTTCATCGTTGTCATTTCGACAACGATCGTGTCCGCTC
TGGTGGCCGGATCCCTGCTATATCGCTATCAGCTGCAAAAGGAGGCGCTG
GAGAAGCAGACACCCATGCCGGTGACCGGAACACTGGCCTCCTGGATGAC
CCTGCGACTGTTTCGCCTGCGACACATGCAACAGCAGCAGCAGCAACAAC
AGCAGCAGCAGCAGCAGCAACAACAAGTGAGGCAGCCGAGTTCAGGTCAC
GAAACGGTCCAGTGAAAGCTTTCTAGACCAT
BS16606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 2049 | CG9369-PA | 1..2049 | 17..2065 | 10245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-RA | 3405 | CG9369-RA | 434..2484 | 15..2065 | 10255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11767168..11768587 | 646..2065 | 7100 | 100 | Plus |
X | 23542271 | X | 11766326..11766481 | 94..249 | 780 | 100 | Plus |
X | 23542271 | X | 11766750..11766900 | 376..526 | 755 | 100 | Plus |
X | 23542271 | X | 11766549..11766684 | 245..380 | 680 | 100 | Plus |
X | 23542271 | X | 11766978..11767102 | 524..648 | 625 | 100 | Plus |
X | 23542271 | X | 11763202..11763281 | 15..94 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:36 has no hits.
BS16606.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:42 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2483 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:08 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2483 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:05:56 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2483 | 17..2064 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:11 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
m-RA | 436..2483 | 17..2064 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:11 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763204..11763281 | 17..94 | 100 | -> | Plus |
X | 11766327..11766480 | 95..248 | 100 | -> | Plus |
X | 11766553..11766680 | 249..376 | 100 | -> | Plus |
X | 11766751..11766898 | 377..524 | 100 | -> | Plus |
X | 11766979..11767101 | 525..647 | 100 | -> | Plus |
X | 11767170..11768586 | 648..2064 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:08 Download gff for
BS16606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657237..11657314 | 17..94 | 100 | -> | Plus |
arm_X | 11660360..11660513 | 95..248 | 100 | -> | Plus |
arm_X | 11660586..11660713 | 249..376 | 100 | -> | Plus |
arm_X | 11660784..11660931 | 377..524 | 100 | -> | Plus |
arm_X | 11661012..11661134 | 525..647 | 100 | -> | Plus |
arm_X | 11661203..11662619 | 648..2064 | 100 | | Plus |
BS16606.pep Sequence
Translation from 16 to 2064
> BS16606.pep
MWSPQKGPTRLWDLRFSSCIFILHLMFSLVIAGNELWPMERPDGMPNIVS
LEVMCGKDHMDVHLTFSHPFEGIVSSKGQHSDPRCVYVPPSTGKTFFSFR
ISYSRCGTKPDLNGQFYENTVVVQYDKDLLEVWDEAKRLRCEWFNDYEKT
ASKPPMVIADLDVIQLDFRGDNVDCWMEIQHGKGPWAPPVSGIVPLGSTL
TLVVAINDYRGEFDMRVKSCVASDGSGHVINLSDEFGCVLRPKMISRFLK
ARAPDERATVITYAFFHAFKFPDALSVHIKCKVEICRHGCLDHCQNTGVG
GGGGGSGESLGLGLGLGLTNANERKDVHMSDALGSSSNDLLRDLALPPGG
QHGMGMGMGPDHDIFYEDIIHDHKQTLGGGGMPAGGDYGHEKSVNLQPRP
VHEEQEEADLSDLFGDEDLADLDMEGGEGERYLGLKKSGKFPHGPRQLEA
QKRMGVPMAGPRSLEPHGHGDEDVPRPVYRPQAEALKQPREDHIDLDKEE
EEEKEKEEKTQQEDKLTGEGGAAASNDSSKSRRRRSLVISDRKVRSADVG
VSGLYDVISEADLAFSPDSKQEAVTVFQGKISEEVVYGICMPVPGFSILF
IVVISTTIVSALVAGSLLYRYQLQKEALEKQTPMPVTGTLASWMTLRLFR
LRHMQQQQQQQQQQQQQQQQVRQPSSGHETVQ*
BS16606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
m-PA | 682 | CG9369-PA | 1..682 | 1..682 | 3628 | 100 | Plus |
dy-PA | 699 | CG9355-PA | 233..509 | 32..294 | 674 | 45.7 | Plus |
dyl-PC | 611 | CG15013-PC | 71..376 | 35..326 | 672 | 41.8 | Plus |
dyl-PA | 611 | CG15013-PA | 71..376 | 35..326 | 672 | 41.8 | Plus |
dyl-PB | 611 | CG15013-PB | 71..376 | 35..326 | 672 | 41.8 | Plus |