Clone Sequence Records
BS16607.complete Sequence
3086 bp assembled on 2009-12-07
GenBank Submission: KX805660
> BS16607.complete
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATC
TGATCTGGATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGG
ATGGGCTAGCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGG
TTTTTGTTTGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCAC
TACCTTCATCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGA
ACCGCCTGGAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTC
ATCAACTCTCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCC
CGGCGTCCTTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTT
TGACCCGTGCCACCGGCTTTGAGGCTTTCCTGGCCAAGAAGTACTCTTCT
GAGAAACGTTTCGGTCTGGAGGGTTGCGAGATCATGATCCCAGCCCTGAA
GGAGATCATCGACGTATCAACGGAGTTGGGAGTGGAGTCGGTCATCATGG
GCATGCCCCATCGTGGACGTCTTAACACCTTGGCCAATGTATGCCGCAAG
CCCTTGAACCAGATCTTCACCCAGTTCGCTGGACTGGAGGCTGCTGATGA
TGGCTCTGGTGATGTCAAGTACCATCTCGGTACATACATCGAGCGATTGA
ACCGCGTTACAAACAAGAACATCCGCCTGGCTGTCGTGGCCAACCCGTCC
CATCTGGAGGCTGTGGATCCCGTGGTGCAGGGCAAGACCCGTGCCGAGCA
GTTCTACCGTGGCGACCAGGAGGGCAAGAAGGTTATGTCCATTTTGATCC
ACGGTGATGCCGCCTTCTGCGGACAGGGCGTCGTCTATGAAACTATGCAT
CTTTCGGACCTGCCCGACTACACCACCCACGGAACTATCCATGTGGTGGC
CAACAACCAGATCGGTTTCACCACCGATCCCCGTTTCTCGAGGTCCTCTC
CCTACTGTACGGATGTGGCTCGTGTCGTCAATGCTCCTATTTTCCACGTC
AACGCTGACGATCCAGAGGCCGTGATGCATGTGTGCAAGGTGGCTGCTGA
GTGGCGTGCTACTTTCCACAAGGATTGTGTTATTGATTTGGTCGGATACC
GCCGCAATGGACACAACGAGATCGACGAGCCCATGTTCACGCAACCCTTG
ATGTACCAGAAGATCCGCAAGCACAAGAACTGTCTCGACCTGTATGCCGA
CAAACTGATCGCCGAGGGCACTGTCACCGCCGAGGAGGTTAAGTCGGTTG
CCGCTAAATACGAGAACATTTGCGAGGAGGCATTCGCTCTGGCCAAGACC
GAGACCCACGTCAAGTACAAGGACTGGCTCGACTCGCCCTGGTCCGGCTT
TTTCGAGGGCAAAGACCCATTGAAGGTAGCGCCCACTGGAGTGAAGGAGG
AGACCCTCATCCACATCGGCAACCGCTTCTCGTCGCCACCACCGAACGCT
GCTGAATTCGTGATTCACAAGGGTCTATTGCGAGTGTTGGCCGCTCGCAA
GGCAATGGTGGACGAAAAGGTCGCTGATTGGGCTTTGGGAGAGGCCATGG
CCTTCGGCTCTCTGCTGAAGGAGGGAATCCATGTGCGCCTTTCGGGACAG
GATGTCGAGCGTGGTACCTTCTCGCATCGCCACCATGTGCTGCACCACCA
GCTGGTCGACAAGGCCACTTACAACTCGCTGCAGCACATGTACCCAGATC
AGGCGCCCTACTCCGTCTCCAACAGCTCGCTGTCGGAGTACGCAGTGCTT
GGTTTCGAGCACGGTTACTCGATGACCAATCCCAATGCCCTGGTGCTGTG
GGAGGCTCAGTTCGGAGACTTCAGCAACACGGCCCAGTCGATCATCGATC
AGTTCATCTCCAGCGGTCAGTCAAAGTGGGTGCGCCAATCGGGTCTGGTA
ATGCTCCTGCCCCACGGCATGGAAGGCATGGGCCCCGAGCACTCCTCGTG
CCGCGTGGAGCGCTTCCTGCAAATGAGCAGTGACGATCCCGACTACTTCC
CACCAGAGTCCGATGAGTTCGGAGTGCGACAGCTGCACGACATTAACTGG
ATCGTGGCAAACTGCTCGACGCCCGCCAACTACTACCACATCCTGCGCCG
ACAGATCGCATTGCCTTTCCGCAAGCCCCTGATTCTGTGCACGCCCAAAT
CGCTGCTGCGTCACCCCGAGGCTAAGAGTCCTTTCAGCGAGATGAGCGAG
GGCAGCGAGTTCCAGCGCATCATCCCCGACAACGGTCCCGCCGGCCAGAA
TCCCAGCAATGTGAAGAAGGTCGTCTTCTGCTCGGGCCGCGTCTACTACG
ATTTGACCAAGACACGTAGGGAAAAGCAGCTGGAGGGCGAAATCGCCATT
GTGCGCGTGGAGCAGATCTCTCCCTTCCCCTTCGATCTGGTCAAGGAGCA
GGCCAACCTGTACAAGAATGCCGAACTCGTGTGGGCCCAAGAGGAGCACA
AGAACCAGGGCAGCTGGACCTATGTGCAACCTCGTTTCCTCACCGCCTTG
AACCACAGCCGCGACGTCAGCTACGTCGGACGCGCCTGCGGAGCCTCCAC
CGCCACCGGATCCAAGGCCCAGCACATCCGTGAGCTGAATGCGCTGCTCA
ACGACGCGATTTCGACCTAAAAGCTTTCTAGACCAT
BS16607.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:06:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3054 | CG11661-PF | 1..3054 | 17..3070 | 15270 | 100 | Plus |
| Nc73EF-RH | 3054 | CG11661-PH | 1..3054 | 17..3070 | 15270 | 100 | Plus |
| Nc73EF-RA | 3027 | CG11661-PA | 514..3027 | 557..3070 | 12570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 66..3119 | 17..3070 | 15270 | 100 | Plus |
| Nc73EF-RH | 3742 | CG11661-RH | 90..3143 | 17..3070 | 15270 | 100 | Plus |
| Nc73EF-RA | 4381 | CG11661-RA | 625..3138 | 557..3070 | 12570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16963870..16964764 | 1921..2815 | 4475 | 100 | Plus |
| 3L | 28110227 | 3L | 16962943..16963812 | 1052..1921 | 4350 | 100 | Plus |
| 3L | 28110227 | 3L | 16962476..16962888 | 640..1052 | 2065 | 100 | Plus |
| 3L | 28110227 | 3L | 1607204..1607692 | 1955..2443 | 915 | 79.1 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16964821..16964978 | 2813..2970 | 790 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16960536..16960668 | 429..561 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 16967379..16967481 | 2968..3070 | 515 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 560..640 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 1606366..1606605 | 1231..1470 | 390 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:06:31 has no hits.
BS16607.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:41 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RF | 61..3112 | 17..3068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:06:05 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 87..3138 | 17..3068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:58:21 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RF | 61..3112 | 17..3068 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:09 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 90..3141 | 17..3068 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:09 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16960538..16960667 | 431..560 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 561..639 | 100 | -> | Plus |
| 3L | 16962476..16962887 | 640..1051 | 100 | -> | Plus |
| 3L | 16962943..16963811 | 1052..1920 | 100 | -> | Plus |
| 3L | 16963870..16964764 | 1921..2815 | 100 | -> | Plus |
| 3L | 16964824..16964978 | 2816..2970 | 100 | -> | Plus |
| 3L | 16967382..16967479 | 2971..3068 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:06:05 Download gff for
BS16607.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16953638..16953767 | 431..560 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 561..639 | 100 | -> | Plus |
| arm_3L | 16955576..16955987 | 640..1051 | 100 | -> | Plus |
| arm_3L | 16956043..16956911 | 1052..1920 | 100 | -> | Plus |
| arm_3L | 16956970..16957864 | 1921..2815 | 100 | -> | Plus |
| arm_3L | 16957924..16958078 | 2816..2970 | 100 | -> | Plus |
| arm_3L | 16960482..16960579 | 2971..3068 | 100 | | Plus |
BS16607.3prime Sequence
899 bp (720 high quality bases) assembled on 2007-05-15
> BS16607.3prime
ATGGTCTAGAAAGCTTTTAGGTCGAAATCGCGTCGTTGAGCAGCGCATTC
AGCTCACGGATGTGCTGGGCCTTGGATCCGGTGGCGGTGGAGGCTCCGCA
GGCGCGTCCGACGTAGCTGACGTCGCGGCTGTGGTTCAAGGCGGTGAGGA
AACGAGGTTGCACATAGGTCCAGCTGCCCTGGTTCTTGTGCTCCTCTTGG
GCCCACACGAGTTCGGCATTCTTGTACAGGTTGGCCTGCTCCTTGACCAG
ATCGAAGGGGAAGGGAGAGATCTGCTCCACGCGCACAATGGCGATTTCGC
CCTCCAGCTGCTTTTCCCTACGTGTCTTGGTCAAATCGTAGTAGACGCGG
CCCGAGCAGAAGACGACCTTCTTCACATTGCTGGGATTCTGGCCGGCGGG
ACCGTTGTCGGGGATGATGCGCTGGAACTCGCTGCCCTCGCTCATCTCGC
TGAAAGGACTCTTAGCCTCGGGGTGACGCAGCAGCGATTTGGGCGTGCAC
AGAATCAGGGGCTTGCGGAAAGGCAATGCGATCTGTCGGCGCAGGATGTG
GTAGTAGTTGGCGGGCGTCGAGCAGTTTGCCACGATCCAGTTAATGTCGT
GCAGCTGTCGCACTCCGAACTCATCGGACTCTGGTGGGAAGTAGTCGGGA
TCGTCACTGCTCATTTGCAGGAAGCGCTCCACGCGGCACGAGGAGTGCTC
GGGGCCCATGCCTTCCATGCCGTGGGGCAGGAGCATTACCAGACCCGATT
GGCGCACCCACTTTGACTGACCGCTGGAGATGAACTGATCGATGATCGAC
TGGGCCGTGTTGCTGAAGTCTCCGAACTGAGCCTCCCACAGCACCAGGGC
ATTGGGATTGGTCATCGAGTAACCGTGCTCGAAACAAGCACTGCGTACT
BS16607.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PG | 3027 | Nc73EF-RG | 2159..3027 | 885..17 | 4345 | 100 | Minus |
| CG11661-PH | 3027 | Nc73EF-RH | 2159..3027 | 885..17 | 4345 | 100 | Minus |
| CG11661-PC | 3027 | Nc73EF-RC | 2159..3027 | 885..17 | 4345 | 100 | Minus |
| CG11661-PB | 3027 | Nc73EF-RB | 2159..3027 | 885..17 | 4345 | 100 | Minus |
| CG11661-PE | 2337 | Nc73EF-RE | 1469..2337 | 885..17 | 4345 | 100 | Minus |
| CG11661-PA | 3027 | Nc73EF-RA | 2159..3027 | 885..17 | 4345 | 100 | Minus |
| CG11661-PF | 3054 | Nc73EF-RF | 2186..3054 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 2236..3119 | 899..17 | 4395 | 99.9 | Minus |
| Nc73EF-RA | 4381 | CG11661-RA | 2255..3138 | 899..17 | 4395 | 99.9 | Minus |
| Nc73EF-RB | 3698 | CG11661-RB | 2216..3099 | 899..17 | 4395 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:15:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16964136..16964764 | 899..272 | 3095 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16964821..16964978 | 274..117 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 16967379..16967481 | 119..17 | 515 | 100 | Minus |
| 3L | 28110227 | 3L | 1607453..1607692 | 883..644 | 480 | 80 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:15:26 has no hits.
BS16607.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:39 Download gff for
BS16607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PF | 2171..3054 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:47 Download gff for
BS16607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2216..3099 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:29:26 Download gff for
BS16607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 2216..3099 | 17..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:29:26 Download gff for
BS16607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16964136..16964764 | 272..899 | 99 | -> | Minus |
| 3L | 16964824..16964978 | 117..271 | 100 | -> | Minus |
| 3L | 16967382..16967481 | 17..116 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:47 Download gff for
BS16607.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16957236..16957864 | 272..899 | 99 | -> | Minus |
| arm_3L | 16957924..16958078 | 117..271 | 100 | -> | Minus |
| arm_3L | 16960482..16960581 | 17..116 | 100 | | Minus |
BS16607.5prime Sequence
910 bp (773 high quality bases) assembled on 2007-05-15
> BS16607.5prime
GAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCCTGGCCT
TGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAGAGCAGC
AGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCGCACCTA
CAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCTCCTACG
TGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTGCACACC
TCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCCCAACTT
GGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACTTTGGAG
GAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGACCATCTG
GCCGTCCAGGCCATCATCAGGAGCTACCAGTCACGAGGTCATTTGGCATC
TGATCTGGATCCGCTTGGAATTTTGACTCGCGAAAAAACCGTCTGCAAGG
ATGGGCTAGCACGTCGTGCTAACGAAGATGTGCTCAGGCAGCACTCTGGG
TTTTTGTTTGGCGAGCAGGACATGGATCGCCAGTTCAAGCTGCCCAGCAC
TACCTTCATCGGAGGCGATGAGGCTTCGTTGCCCCTAAAGGAAATCCTGA
ACCGCCTGGAGAATGTCTACTGTAATAAGATTGGCGTGGAGTTCATGTTC
ATCAACTCTCTGGAGCAATGCAACTGGATCCGCAAGCGTTTTGAGACCCC
CGGCGTCCTTAACTTCTCGCCCGAGGAGAAGCGTCTGATCCTGGCCCGTT
TGACCCGTGCCACCGGCTTTGAGGCTTTCCTGGNCAAGAAGTACTCTTCT
GAGAAACGTTTCGGTCTGGGAGGGTGCGAGATCATGATCCCAGCCCTGAA
GGAGATCATC
BS16607.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11661-PF | 3054 | Nc73EF-RF | 1..894 | 17..910 | 4376 | 99.5 | Plus |
| CG11661-PG | 3027 | Nc73EF-RG | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PH | 3027 | Nc73EF-RH | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PC | 3027 | Nc73EF-RC | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PB | 3027 | Nc73EF-RB | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PA | 3027 | Nc73EF-RA | 1..414 | 17..430 | 2070 | 100 | Plus |
| CG11661-PG | 3027 | Nc73EF-RG | 514..867 | 557..910 | 1676 | 98.8 | Plus |
| CG11661-PH | 3027 | Nc73EF-RH | 514..867 | 557..910 | 1676 | 98.8 | Plus |
| CG11661-PC | 3027 | Nc73EF-RC | 514..867 | 557..910 | 1676 | 98.8 | Plus |
| CG11661-PB | 3027 | Nc73EF-RB | 514..867 | 557..910 | 1676 | 98.8 | Plus |
| CG11661-PA | 3027 | Nc73EF-RA | 514..867 | 557..910 | 1676 | 98.8 | Plus |
| CG11661-PE | 2337 | Nc73EF-RE | 1..267 | 17..283 | 1335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RF | 3718 | CG11661-RF | 66..959 | 17..910 | 4414 | 99.7 | Plus |
| Nc73EF-RH | 3742 | CG11661-RH | 90..983 | 17..910 | 4414 | 99.7 | Plus |
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..873 | 17..430 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16962476..16962746 | 640..910 | 1299 | 98.5 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 251..430 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 109..250 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16960536..16960668 | 429..561 | 665 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 17..112 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 560..640 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:25:36 has no hits.
BS16607.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:57 Download gff for
BS16607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11661-PF | 1..894 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:28 Download gff for
BS16607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 87..980 | 17..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:42:50 Download gff for
BS16607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RH | 90..983 | 17..910 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:42:50 Download gff for
BS16607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959121..16959216 | 17..112 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 113..250 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 251..430 | 100 | -> | Plus |
| 3L | 16960538..16960667 | 431..560 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 561..639 | 100 | -> | Plus |
| 3L | 16962476..16962746 | 640..910 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:28 Download gff for
BS16607.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16952221..16952316 | 17..112 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 113..250 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 251..430 | 100 | -> | Plus |
| arm_3L | 16953638..16953767 | 431..560 | 100 | -> | Plus |
| arm_3L | 16955435..16955513 | 561..639 | 100 | -> | Plus |
| arm_3L | 16955576..16955846 | 640..910 | 98 | | Plus |
BS16607.pep Sequence
Translation from 16 to 3069
> BS16607.pep
MHRAHTAFSLALSPMAHKNFATWLLKSSSSQQMAKVTAAAAVRTYNSAAA
EPFANGSTASYVEEMYNAWLRDPTSVHTSWDAYFRSNSYVSPPNLAPVQA
NTLPLTAFNFGGAVAGAAPDSKTIDDHLAVQAIIRSYQSRGHLASDLDPL
GILTREKTVCKDGLARRANEDVLRQHSGFLFGEQDMDRQFKLPSTTFIGG
DEASLPLKEILNRLENVYCNKIGVEFMFINSLEQCNWIRKRFETPGVLNF
SPEEKRLILARLTRATGFEAFLAKKYSSEKRFGLEGCEIMIPALKEIIDV
STELGVESVIMGMPHRGRLNTLANVCRKPLNQIFTQFAGLEAADDGSGDV
KYHLGTYIERLNRVTNKNIRLAVVANPSHLEAVDPVVQGKTRAEQFYRGD
QEGKKVMSILIHGDAAFCGQGVVYETMHLSDLPDYTTHGTIHVVANNQIG
FTTDPRFSRSSPYCTDVARVVNAPIFHVNADDPEAVMHVCKVAAEWRATF
HKDCVIDLVGYRRNGHNEIDEPMFTQPLMYQKIRKHKNCLDLYADKLIAE
GTVTAEEVKSVAAKYENICEEAFALAKTETHVKYKDWLDSPWSGFFEGKD
PLKVAPTGVKEETLIHIGNRFSSPPPNAAEFVIHKGLLRVLAARKAMVDE
KVADWALGEAMAFGSLLKEGIHVRLSGQDVERGTFSHRHHVLHHQLVDKA
TYNSLQHMYPDQAPYSVSNSSLSEYAVLGFEHGYSMTNPNALVLWEAQFG
DFSNTAQSIIDQFISSGQSKWVRQSGLVMLLPHGMEGMGPEHSSCRVERF
LQMSSDDPDYFPPESDEFGVRQLHDINWIVANCSTPANYYHILRRQIALP
FRKPLILCTPKSLLRHPEAKSPFSEMSEGSEFQRIIPDNGPAGQNPSNVK
KVVFCSGRVYYDLTKTRREKQLEGEIAIVRVEQISPFPFDLVKEQANLYK
NAELVWAQEEHKNQGSWTYVQPRFLTALNHSRDVSYVGRACGASTATGSK
AQHIRELNALLNDAIST*
BS16607.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-PF | 1017 | CG11661-PF | 1..1017 | 1..1017 | 5344 | 100 | Plus |
| Nc73EF-PH | 1017 | CG11661-PH | 1..1017 | 1..1017 | 5344 | 100 | Plus |
| Nc73EF-PA | 1008 | CG11661-PA | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
| Nc73EF-PB | 1008 | CG11661-PB | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
| Nc73EF-PC | 1008 | CG11661-PC | 1..1008 | 1..1017 | 5153 | 97.1 | Plus |
