Clone Sequence Records
BS16609.3prime Sequence
866 bp (782 high quality bases) assembled on 2007-05-15
> BS16609.3prime
ATGGTCTAGAAAGCTTTTAGGAGTTGCCCAGGTTGGACGGCGACGGTGGC
CACTGGCGCTTGATGACCGCAAAGTGAGTCATCTGGAAGGTGTTGGTCAC
CTGGCAGCGGCGCTCCACGAATCCGGTGAGGCAGTAGCCCATGTTGTAGT
CCTCCATCGAGATGTTCGACGTCAGATACAGCTTGAACTCGTCGTTCCAC
GCGGGCTGCGACTTGTCACAGCCCGTTGACCCCGTCCGGATTGCATCGGC
AGGTATTGCGGGCGTGGGCGTGGCAGCCACCGAACCGTTGCCCGATGCCC
CGCCCCCCGCTGGCGATGCAGCTCCTCCGCCCCCCGCCGTCGTCCGGCGA
AAGTGTCCGGCAATCAGGAGGGATCCCTGCTGCTCCAGCGGCAGCATCCG
GGCTTTCGTCGCGCGCCGTTGGGTTCCGGAGCACTCGACGATGCGGCAGC
GATTGGGCTGCCAGAAGCAGGGCGTGATGGTCCAGTAACTGGATGAGGCG
GTCCTCGCCCAGCCCTCCTCGGGATACAGCAGTATCTTGTTGGAATTGCC
ATTGAATTTAAGCAGCTTCTTGCAGGACTTGCCGCGACTCTCGAAGTAGA
TTTCCTGCGGCGTCCGGCGGCGTCGCTGTCCGGAAACGGCAGCAGGTGTG
GCGACTCCCTTGCGCTGCAACTGCAGCTGGGAGAAGGGATCGCTGCCCGC
CACCGATTGCGTGGCCTTGTGGCGACTCACGCAGAGGAGGCGGCCCAAGA
TGCCGCAGCAGCCGCTGGGCGGCGCCTCACTTCCGGCGGCCGGAGTCCTG
GTGGCTCCAACTCCGGCTCCGGCTTCTGCTGCATTGTTGTTGGAGCAGCG
GGCGGATATGGTCATT
BS16609.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-PA | 894 | CG30419-RA | 45..894 | 866..17 | 4225 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-RA | 3812 | CG30419-RA | 387..1236 | 866..17 | 4235 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24215067..24215587 | 17..537 | 2605 | 100 | Plus |
| 2R | 25286936 | 2R | 24229079..24229409 | 536..866 | 1640 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:15:48 has no hits.
BS16609.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:49 Download gff for
BS16609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-PA | 45..894 | 17..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:49 Download gff for
BS16609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 387..1239 | 13..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:53 Download gff for
BS16609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 387..1239 | 13..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:53 Download gff for
BS16609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24215064..24215585 | 13..535 | 99 | <- | Plus |
| 2R | 24229079..24229409 | 536..866 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:49 Download gff for
BS16609.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20102587..20103108 | 13..535 | 99 | <- | Plus |
| arm_2R | 20116602..20116932 | 536..866 | 99 | | Plus |
BS16609.5prime Sequence
407 bp (320 high quality bases) assembled on 2007-05-15
> BS16609.5prime
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCG
BS16609.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-PA | 894 | CG30419-RA | 1..391 | 17..407 | 1955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-RA | 3812 | CG30419-RA | 341..733 | 15..407 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24229079..24229455 | 391..15 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:53:52 has no hits.
BS16609.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:02 Download gff for
BS16609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-PA | 1..391 | 17..407 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:07 Download gff for
BS16609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 336..733 | 10..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:52 Download gff for
BS16609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 336..733 | 10..407 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:52 Download gff for
BS16609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24215570..24215585 | 392..407 | 100 | <- | Minus |
| 2R | 24229079..24229460 | 10..391 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:07 Download gff for
BS16609.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20103093..20103108 | 392..407 | 100 | <- | Minus |
| arm_2R | 20116602..20116983 | 10..391 | 99 | | Minus |
BS16609.complete Sequence
926 bp assembled on 2007-05-07
GenBank Submission: FJ638168
> BS16609.complete
GAAGTTATCAGTCGACATGGAAATGGACGTCAATCGCCCGACCGGCCGCC
ATGGCAACCTAATGACCATATCCGCCCGCTGCTCCAACAACAATGCAGCC
GAAGCCGGAGCCGGAGTTGGAGCCACCAGGACTCCGGCCGCCGGAAGTGA
GGCGCCGCCCAGCGGCTGCTGCGGCATCTTGGGCCGCCTCCTCTGCGTGA
GTCGCCACAAGGCCACGCAATCGGTGGCGGGCAGCGATCCCTTCTCCCAG
CTGCAGTTGCAGCGCAAGGGAGTCGCCACACCTGCTGCCGTTTCCGGACA
GCGACGCCGCCGGACGCCGCAGGAAATCTACTTCGAGAGTCGCGGCAAGT
CCTGCAAGAAGCTGCTTAAATTCAATGGCAATTCCAACAAGATACTGCTG
TATCCCGAGGAGGGCTGGGCGAGGACCGCCTCATCCAGTTACTGGACCAT
CACGCCCTGCTTCTGGCAGCCCAATCGCTGCCGCATCGTCGAGTGCTCCG
GAACCCAACGGCGCGCGACGAAAGCCCGGATGCTGCCGCTGGAGCAGCAG
GGATCCCTCCTGATTGCCGGACACTTTCGCCGGACGACGGCGGGGGGCGG
AGGAGCTGCATCGCCAGCGGGGGGCGGGGCATCGGGCAACGGTTCGGTGG
CTGCCACGCCCACGCCCGCAATACCTGCCGATGCAATCCGGACGGGGTCA
ACGGGCTGTGACAAGTCGCAGCCCGCGTGGAACGACGAGTTCAAGCTGTA
TCTGACGTCGAACATCTCGATGGAGGACTACAACATGGGCTACTGCCTCA
CCGGATTCGTGGAGCGCCGCTGCCAGGTGACCAACACCTTCCAGATGACT
CACTTTGCGGTCATCAAGCGCCAGTGGCCACCGTCGCCGTCCAACCTGGG
CAACTCCTAAAAGCTTTCTAGACCAT
BS16609.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-RA | 894 | CG30419-PA | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-RA | 3812 | CG30419-RA | 341..1236 | 15..910 | 4480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:11:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24215067..24215587 | 910..390 | 2605 | 100 | Minus |
| 2R | 25286936 | 2R | 24229079..24229455 | 391..15 | 1885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:11:14 has no hits.
BS16609.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:40 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 1..894 | 17..910 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:03 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 339..1230 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:05 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 343..1234 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:40 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 332..1232 | 10..910 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:50 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30419-RA | 343..1234 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:50 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24215069..24215585 | 392..908 | 100 | <- | Minus |
| 2R | 24229079..24229453 | 17..391 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:05 Download gff for
BS16609.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20102592..20103108 | 392..908 | 100 | <- | Minus |
| arm_2R | 20116602..20116976 | 17..391 | 100 | | Minus |
BS16609.pep Sequence
Translation from 16 to 909
> BS16609.pep
MEMDVNRPTGRHGNLMTISARCSNNNAAEAGAGVGATRTPAAGSEAPPSG
CCGILGRLLCVSRHKATQSVAGSDPFSQLQLQRKGVATPAAVSGQRRRRT
PQEIYFESRGKSCKKLLKFNGNSNKILLYPEEGWARTASSSYWTITPCFW
QPNRCRIVECSGTQRRATKARMLPLEQQGSLLIAGHFRRTTAGGGGAASP
AGGGASGNGSVAATPTPAIPADAIRTGSTGCDKSQPAWNDEFKLYLTSNI
SMEDYNMGYCLTGFVERRCQVTNTFQMTHFAVIKRQWPPSPSNLGNS*
BS16609.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30419-PA | 297 | CG30419-PA | 1..297 | 1..297 | 1586 | 100 | Plus |
