Clone Sequence Records
BS16610.3prime Sequence
879 bp (837 high quality bases) assembled on 2007-05-15
> BS16610.3prime
ATGGTCTAGAAAGCTTTCATTTTCTCGACAACATTATGTTCATGACCGTG
CCGCAGTTTAGCAGCACTCGTTTGGCATCGCTCAGGTTGGCATTGGTCAG
GTCGTAGCCGTCGATTTCCAGCAACTTGTCGTTCAGATTAAGCAGGCGGG
CGGCATTCGTATTGGGCGTTATGGAGCTCACAAAGATGCCAACCTGATTA
AGAAGCTCGGCTATATCAAAGCCTATAGAGTTCTCCCATTTTAGAGTAAC
CTGTTTGACTGTCGGATTTTTGTGGACACCAAAGATCCAGGTGGATTTCT
TATGGCTCGCTTTGGAAGTATTGTTAGTGGCCGTGGAATTAAGCGAGTGC
TGCGACATAGTGTCATCCAGCTCCTGGTCTTCCTCCTCCGGATTTGGCTC
TAAATTATTGCTAATATTATTTTGGTAGTCCAACTGATCGACTGACTCTT
CGACGTCCTGAGCGCCAATCGCTGTCGTTTTAAAGTTACTATTGCTATTC
AAAGCATCTTGGTAGATGGTTTGTTCTTGCAGCTGTTGTTGCTGCTTTCG
CTGCCTCATGGACTCGTAAAGGTTGAGATCCTCGGGCGTTTTCTTTGTGT
AAACTCGAGCTATGTGGTATGGTGGTGGTTCCAACCGGGGTGTTGGCAGC
GCCTGTTGCTGCATTGGTTGTTGCTGCAGCGGTTGCAACTCATAGTCCTG
ATCCCCGTTTAAATGCGTGGTGGGAAGCGGCGTGTTGGCCTCGACGTAAA
GCTGCTGATAGTGTGCTTCGTAGTTGACCAGTGGCAGGCCGTAGTACTCC
TGCGTTGGCACCGGGTGCGCCATCTGCTGCGGTTGCTGATAGACTCCGTA
GATGTGTGTCGTTTCGGGCGCAATGCCGT
BS16610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 19:01:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10255-PA | 2550 | Lap1-RA | 1688..2550 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-RB | 3841 | CG10255-RB | 2101..2963 | 879..17 | 4315 | 100 | Minus |
| Lap1-RA | 4587 | CG10255-RA | 2084..2946 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:41:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14938158..14938846 | 879..191 | 3445 | 100 | Minus |
| 2R | 25286936 | 2R | 14938902..14939081 | 196..17 | 900 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:41:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2663 | 685..521 | 139 | 58.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1156 | 554..507 | 116 | 73.5 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6893 | 546..485 | 115 | 71.4 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2390..2433 | 554..509 | 108 | 73.9 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1089 | 554..528 | 108 | 88.9 | Minus |
BS16610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 19:01:10 Download gff for
BS16610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10255-PA | 1688..2550 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:25:57 Download gff for
BS16610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 2084..2946 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:37 Download gff for
BS16610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 2084..2946 | 17..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:37 Download gff for
BS16610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14938158..14938843 | 194..879 | 100 | -> | Minus |
| 2R | 14938905..14939081 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:25:57 Download gff for
BS16610.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10825663..10826348 | 194..879 | 100 | -> | Minus |
| arm_2R | 10826410..10826586 | 17..193 | 100 | | Minus |
BS16610.complete Sequence
2582 bp assembled on 2010-07-15
GenBank Submission: KX805163
> BS16610.complete
GAAGTTATCAGTCGACATGCCGCTGCTGAGCAAATGCTTCCCCTGCTTCA
AATTCAAGCGCGAGGAGGTGATCGACAAGCTGGACTACAGTAATACCCCG
CTAACGGATTTCCCAGAAGTTTGGCAGCACGAGCGAACCCTGGAGGAGCT
TTACCTGAGCACCACAAGATTGCAAGCTCTGCCACCGCAATTGTTTTATT
GCCAAGGATTAAGGGTGCTTCACGTAAACAGCAACAATTTGGAGAGCATT
CCACAGGCCATTGGCAGTCTGCGACAGCTGCAGCATCTGGATCTCAACCG
GAATCTTATTGTCAATGTGCCCGAGGAAATCAAGTCCTGTAAGCACTTAA
CCCACTTGGACCTGAGCTGCAACAGTTTGCAACGTCTTCCCGATGCCATT
ACCTCGCTAATTTCGCTGCAGGAGCTGCTGCTAAACGAGACCTATCTAGA
ATTCCTACCAGCCAACTTTGGCCGATTGGTAAATCTGAGAATTCTGGAGC
TGCGACTCAACAATCTCATGACACTTCCCAAATCCATGGTGAGACTAATC
AACCTACAGAGGCTGGACATTGGCGGTAATGAATTTACCGAGTTGCCCGA
AGTTGTCGGCGAGTTGAAGTCCCTTCGCGAACTATGGATCGACTTCAATC
AAATACGTCGTGTTTCGGCCAACATTGGAAAGCTACGCGATCTGCAGCAC
TTCGAGGCCAATGGCAACTTGCTGGACACTCTTCCCAGCGAGCTGAGCAA
CTGGCGCAATGTGGAGGTACTATCTATATGCTCCAACAGCCTGGAGGCCT
TTCCCTTCAGCGTGGGCATGCTGAAGTCCCTGGTGACATTCAAGTGCGAG
TCAAACGGTTTGACAGAGTTACCCGACAGCATAAGCTACTTGGAACAGCT
CGAGGAACTAGTATTAAGCCACAACAAGCTTATACGCCTACCTAGCACAA
TTGGGATGTTGCGTAGCCTTCGCTTTCTGTTCGCCGATGATAATCAACTA
CGACAACTACCAGATGAGCTGTGCAGCTGTCAGCAGTTGAGTGTGCTAAG
TGTGGCGAACAATCAGTTGTCCGCTCTACCACAGAACATTGGAAACCTGA
GCAAGATGAAGGTACTCAATGTGGTGAATAACTACATAAATGCATTGCCA
GTTTCGATGTTAAATCTGGTTAATCTCACATCGATGTGGCTAAGCGATAA
CCAATCGCAGCCCTTGGTGCCGCTGCAATATCTAGATGCAAGTACAAAGA
CCCAGTTGACCTGCTTCATGCTGCCCCAAGTCACATTCAAGATGAACAGT
ATACAGGCCCAACAGCAGGCTCAGGAGCAGTATGAGTTCGTTTACGCCAA
CCAGCAGCAGCCTCACGCGAGTCCCTCGAGAAGGATTTGCTTCGCCGAGG
AGGCCACCATTCTTAGCAACGCCAAAGCACAGCCAGCGCCCAATTATCCC
AGCTTTGTGGCCGCTCCGCCGACGCCAACGCCCGATCAGATGGCTGGGTC
TGTGCGGTTAATGCGTTCACCCACACCTTATCCCAAGGAGCTGCGACAAA
TGTCCAAATATGTGAGGCAGGCTCAGGCGGCGACCTCATCGGCCAATGCC
AGCGAGGTAAGGGAGGCACGCGTAGTAACCAATGGACAAATTCACTGTGA
TAGCAACAATGCCAACCAGGATGTTGTGGACCAGGCCACAACAAGTGCAA
TATACGGCATTGCGCCCGAAACGACACACATCTACGGAGTCTATCAGCAA
CCGCAGCAGATGGCGCACCCGGTGCCAACGCAGGAGTACTACGGCCTGCC
ACTGGTCAACTACGAAGCACACTATCAGCAGCTTTACGTCGAGGCCAACA
CGCCGCTTCCCACCACGCATTTAAACGGGGATCAGGACTATGAGTTGCAA
CCGCTGCAGCAACAACCAATGCAGCAACAGGCGCTGCCAACACCCCGGTT
GGAACCACCACCATACCACATAGCTCGAGTTTACACAAAGAAAACGCCCG
AGGATCTCAACCTTTACGAGTCCATGAGGCAGCGAAAGCAGCAACAACAG
CTGCAAGAACAAACCATCTACCAAGATGCTTTGAATAGCAATAGTAACTT
TAAAACGACAGCGATTGGCGCTCAGGACGTCGAAGAGTCAGTCGATCAGT
TGGACTACCAAAATAATATTAGCAATAATTTAGAGCCAAATCCGGAGGAG
GAAGACCAGGAGCTGGATGACACTATGTCGCAGCACTCGCTTAATTCCAC
GGCCACTAACAATACTTCCAAAGCGAGCCATAAGAAATCCACCTGGATCT
TTGGTGTCCACAAAAATCCGACAGTCAAACAGGTTACTCTAAAATGGGAG
AACTCTATAGGCTTTGATATAGCCGAGCTTCTTAATCAGGTTGGCATCTT
TGTGAGCTCCATAACGCCCAATACGAATGCCGCCCGCCTGCTTAATCTGA
ACGACAAGTTGCTGGAAATCGACGGCTACGACCTGACCAATGCCAACCTG
AGCGATGCCAAACGAGTGCTGCTAAACTGCGGCACGGTCATGAACATAAT
GTTGTCGAGAAAATGAAAGCTTTCTAGACCAT
BS16610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-RB | 2550 | CG10255-PB | 1..2550 | 17..2566 | 12750 | 100 | Plus |
| Lap1-RA | 2550 | CG10255-PA | 1..2550 | 17..2566 | 12750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-RB | 3841 | CG10255-RB | 414..2963 | 17..2566 | 12750 | 100 | Plus |
| Lap1-RA | 4587 | CG10255-RA | 397..2946 | 17..2566 | 12750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14937049..14938846 | 595..2392 | 8990 | 100 | Plus |
| 2R | 25286936 | 2R | 14936547..14936836 | 306..595 | 1450 | 100 | Plus |
| 2R | 25286936 | 2R | 14938902..14939081 | 2387..2566 | 900 | 100 | Plus |
| 2R | 25286936 | 2R | 14936146..14936298 | 17..169 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 14936355..14936490 | 170..305 | 680 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 04:36:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2496..2663 | 1898..2062 | 139 | 58.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1108..1156 | 2029..2076 | 116 | 73.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6834..6893 | 2037..2098 | 115 | 71.4 | Plus |
BS16610.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:26 Download gff for
BS16610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 398..2940 | 17..2559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:07 Download gff for
BS16610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..2939 | 17..2559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:29 Download gff for
BS16610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lap1-RA | 397..2939 | 17..2559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:29 Download gff for
BS16610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14936146..14936298 | 17..169 | 100 | -> | Plus |
| 2R | 14936355..14936490 | 170..305 | 100 | -> | Plus |
| 2R | 14936547..14936836 | 306..595 | 100 | -> | Plus |
| 2R | 14937050..14938843 | 596..2389 | 100 | -> | Plus |
| 2R | 14938905..14939074 | 2390..2559 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:07 Download gff for
BS16610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10823651..10823803 | 17..169 | 100 | -> | Plus |
| arm_2R | 10823860..10823995 | 170..305 | 100 | -> | Plus |
| arm_2R | 10824052..10824341 | 306..595 | 100 | -> | Plus |
| arm_2R | 10824555..10826348 | 596..2389 | 100 | -> | Plus |
| arm_2R | 10826410..10826579 | 2390..2559 | 100 | | Plus |
BS16610.pep Sequence
Translation from 16 to 2565
> BS16610.pep
MPLLSKCFPCFKFKREEVIDKLDYSNTPLTDFPEVWQHERTLEELYLSTT
RLQALPPQLFYCQGLRVLHVNSNNLESIPQAIGSLRQLQHLDLNRNLIVN
VPEEIKSCKHLTHLDLSCNSLQRLPDAITSLISLQELLLNETYLEFLPAN
FGRLVNLRILELRLNNLMTLPKSMVRLINLQRLDIGGNEFTELPEVVGEL
KSLRELWIDFNQIRRVSANIGKLRDLQHFEANGNLLDTLPSELSNWRNVE
VLSICSNSLEAFPFSVGMLKSLVTFKCESNGLTELPDSISYLEQLEELVL
SHNKLIRLPSTIGMLRSLRFLFADDNQLRQLPDELCSCQQLSVLSVANNQ
LSALPQNIGNLSKMKVLNVVNNYINALPVSMLNLVNLTSMWLSDNQSQPL
VPLQYLDASTKTQLTCFMLPQVTFKMNSIQAQQQAQEQYEFVYANQQQPH
ASPSRRICFAEEATILSNAKAQPAPNYPSFVAAPPTPTPDQMAGSVRLMR
SPTPYPKELRQMSKYVRQAQAATSSANASEVREARVVTNGQIHCDSNNAN
QDVVDQATTSAIYGIAPETTHIYGVYQQPQQMAHPVPTQEYYGLPLVNYE
AHYQQLYVEANTPLPTTHLNGDQDYELQPLQQQPMQQQALPTPRLEPPPY
HIARVYTKKTPEDLNLYESMRQRKQQQQLQEQTIYQDALNSNSNFKTTAI
GAQDVEESVDQLDYQNNISNNLEPNPEEEDQELDDTMSQHSLNSTATNNT
SKASHKKSTWIFGVHKNPTVKQVTLKWENSIGFDIAELLNQVGIFVSSIT
PNTNAARLLNLNDKLLEIDGYDLTNANLSDAKRVLLNCGTVMNIMLSRK*
BS16610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lap1-PB | 849 | CG10255-PB | 1..849 | 1..849 | 4381 | 100 | Plus |
| Lap1-PA | 849 | CG10255-PA | 1..849 | 1..849 | 4381 | 100 | Plus |
| scrib-PC | 1247 | CG43398-PC | 3..817 | 6..849 | 747 | 28.6 | Plus |
| scrib-PI | 1711 | CG43398-PI | 3..817 | 6..849 | 747 | 28.6 | Plus |
| scrib-PB | 1756 | CG43398-PB | 3..817 | 6..849 | 747 | 28.6 | Plus |
