Clone BS16617 Report

Search the DGRC for BS16617

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG5087-RA
Protein status:BS16617.pep: full length peptide match
Sequenced Size:3269

Clone Sequence Records

BS16617.complete Sequence

3269 bp assembled on 2009-12-07

GenBank Submission: KX806126

> BS16617.complete
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCA
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAGTTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGCCTTCGTCCCCT
GATCGATGGCAACTTCAGTCGTAATCTACTGGCAAAGTTTCTGTCGGAGA
TTCTGTCTGTGCCCGCTTTAATCTACCATCTGCAACAGAGTGTACCTCAG
TGCCTGGAACAGTTCTCATCGATGGGACTGCTTAAGAAGGCGCTTAGCAT
TTCGGGGGACGTGCAGTGGTTCGAGGAGTTCGGCACTAGCATGCCGGGCA
CCAAGTCCCTGGCTTTTCTGGGAAACATAGTGAATTTGTTCAATATCGAT
GGCCAAGGGGAGTCCAAGGAGTTGGCCTATCCACTACTGACTGAAACCAC
CACATCGCTGTTGGAACTAATACCCAACACGGTGACCACTAAGGGAGTAT
TTACTCAGTGGCACGAGCTTTTAGGATGGCATACTCCGGGTCCGGAGCCT
GCTCAAAATCAGAATGTGGCGCTGATTAAGAAGCAGTTCCACATGTTGTG
GGATCATCGCTGCATAAAACTGTTGCTCGGAGATCTCTTGAAGCAAATCA
ATCTTAACTACGAGCGGATCGAGTTTCAATCTCCCCAACAACCATCTATA
TCGAATCTGCTGCGTCGGGCCTTGGAGCGCAGCTCCACGAGAGGTGTAAA
CTTAATGGGAGTGGCGAGCAGCAAGCAGTCTAAGCAGCAGTGGCGCAAGC
TCGACAGTGCGGAGGTGGTGCAGGTGTCACGAATCTGCGGCATGTATTAT
GCCGCCCTCAACACGCTTTCCCAGATGAAACTGGACATTCTGACTGGCAT
TTGCTACAGCGACAATGTGCTATATGATATTTGGTTGCTAATCACGTCCC
TTGGCCCCAATTGTGGCATGAAGGAGTACTTGGAGCTGCTGAAGTCCGAA
ACAAACTTGCAAAAGCCACAGACCGCCATGCTGATGCTCTTTTGCGACTG
CATGACGCACTACGTAACGATTCTGGATGAACACGAAATGTACACGGAGC
AGAATCCTTTCAAACTCAACGACTACGTGTTGCTGACCTACTTCCTTAAT
AATATTCTCTATAAACTTATTAACGATAATCTTCTGGCAGGTGCCAAGAA
CATTGTCCAGCATCCGGTTTTCCTCTCGCTGCACACTCTGATGCTTTGCT
TGTACCGCCGCGATTGTCGTCGCCCATTCACGCCACCCAAACACTGGCTG
ATACCAGAGGTGAAACCCTCCACGTTCATCAATGACCTGGAAAAGGCCAA
GAGGAATGCGATGCTGCTGCTCGCCAAGATGCCGCACATTATACCGCACG
AGGATCGGGTCAAGTTGTTCCGAAAGTTCGTGCAGAATGAGAAGGCGGTG
ATGGGTCTGACGGAGAGTGCCTGCGCCTCACCTCGATCCGCACTAATTGT
CATTCATCGCGATCGTATTGTGGAGGATGGCTACCGGCAACTGGCCGCCC
AGCCCACGCAAGCCCTAAAAGGTGTTATCCGCGTGCGTTTTATCAATCAA
CAAGGACTGCACGAGGCAGGAATTGATCAGGATGGAGTGTTCAAGGAATT
CCTTGAGGAGACCATCAAAAAGGTGTTCGACCCGTCGCTGAATCTCTTTA
AAACCACCTCGGATCAGCGATTATATCCCTCGCCCATTTCCTACGTCCAG
GACAATCATTTGGAGCTCTTTGAGTTTGTGGGCCGCATGCTGGGCAAGGC
GGTGTACGAGGGCATCGTGGTGGACGTGCCGTTTGCCTCCTTCTTCCTCT
CCCAGCTGCTCGGCCAGACGCAACAGGCCCTGTACTCCTGCATGGACGAG
CTGCCGTCGCTGGACAACGAGTTGTATCGCAGTCTTACCTTCATCAAACA
CTATAAGCAGGATGTGTCCGATCTGAACCTTACCTTTTCCGTGGACCAGG
ATGTAATGGGCAAAATTGTCACGCTCGCTTTGCATCCGGGTGGCAAGGCG
CGTGTGGTTAATGACCACAACAAGCTGGTCTACATACACTACATGGCCTT
TTTCCACATGAACACCCAGATACGCGAGCAGACGATAGCTTTCAATCGTG
GCTTCCGCAGCATCGTCAATCCAGAATGGTTGTCTCTTTTCTCGCCTCCC
GAATTGCAGCGCCTTATTTCTGGGGACACTAGTCCATTGGACTTAAAGGA
TCTGCAAAAGCATACGCATTACTACGGTGGCTTCCACGACACTCATCAAG
TGGTCTGCTGGCTCTGGGATATCCTGGCCAAGGATTTCACCGAGGAGGAG
CGCAAGCTGTTCCTAAAGTTTGTCACCAGCTGCTCAAAGCCGCCGCTTTT
GGGTTTCGCCCACCTGGAGCCACCATTCTCGATTCGTTGCGTGGAGGTTA
GTGATGACGAGGATACAGGCGACACAATCGGAAGTGTGATTCGCGGTTTC
TTCGCCATACGTAAGAAGGATCCACTCAACCGACTGCCCACCTCGTCGAC
CTGCTTCAATCTGCTGAAGCTGCCCAACTACCAAAAGAAGTCCACGCTGC
GGGACAAACTTCGCTATGCCGTAAGCAGCAACACCGGATTCGAGCTGTCC
TAAAAGCTTTCTAGACCAT

BS16617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RA 3237 CG5087-PA 1..3237 17..3253 16185 100 Plus
CG5087-RB 3234 CG5087-PB 1..3234 17..3253 16105 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RA 3945 CG5087-RA 272..3510 17..3255 16195 100 Plus
CG5087-RB 3942 CG5087-RB 272..3507 17..3255 16115 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9000602..9001783 1787..2968 5910 100 Plus
3L 28110227 3L 8999653..9000279 1043..1669 3135 100 Plus
3L 28110227 3L 8998663..8999152 172..661 2450 100 Plus
3L 28110227 3L 8999207..8999597 653..1043 1925 99.5 Plus
3L 28110227 3L 9001843..9002131 2967..3255 1445 100 Plus
3L 28110227 3L 8998455..8998609 17..171 775 100 Plus
3L 28110227 3L 9000339..9000457 1669..1787 595 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:16:46 has no hits.

BS16617.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:46 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 276..3504 23..3251 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:25 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 278..3506 23..3251 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:53:45 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 276..3504 23..3251 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:00 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 278..3506 23..3251 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:00 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8998461..8998609 23..171 100 -> Plus
3L 8998663..8999152 172..661 100 -> Plus
3L 8999216..8999596 662..1042 100 -> Plus
3L 8999653..9000278 1043..1668 100 -> Plus
3L 9000339..9000457 1669..1787 100 -> Plus
3L 9000603..9001783 1788..2968 100 -> Plus
3L 9001845..9002127 2969..3251 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:25 Download gff for BS16617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8991561..8991709 23..171 100 -> Plus
arm_3L 8991763..8992252 172..661 100 -> Plus
arm_3L 8992316..8992696 662..1042 100 -> Plus
arm_3L 8992753..8993378 1043..1668 100 -> Plus
arm_3L 8993439..8993557 1669..1787 100 -> Plus
arm_3L 8993703..8994883 1788..2968 100 -> Plus
arm_3L 8994945..8995227 2969..3251 100   Plus

BS16617.3prime Sequence

833 bp (818 high quality bases) assembled on 2007-05-15

> BS16617.3prime
ATGGTCTAGAAAGCTTTTAGGACAGCTCGAATCCGGTGTTGCTGCTTACG
GCATAGCGAAGTTTGTCCCGCAGCGTGGACTTCTTTTGGTAGTTGGGCAG
CTTCAGCAGATTGAAGCAGGTCGACGAGGTGGGCAGTCGGTTGAGTGGAT
CCTTCTTACGTATGGCGAAGAAACCGCGAATCACACTTCCGATTGTGTCG
CCTGTATCCTCGTCATCACTAACCTCCACGCAACGAATCGAGAATGGTGG
CTCCAGGTGGGCGAAACCCAAAAGCGGCGGCTTTGAGCAGCTGGTGACAA
ACTTTAGGAACAGCTTGCGCTCCTCCTCGGTGAAATCCTTGGCCAGGATA
TCCCAGAGCCAGCAGACCACTTGATGAGTGTCGTGGAAGCCACCGTAGTA
ATGCGTATGCTTTTGCAGATCCTTTAAGTCCAATGGACTAGTGTCCCCAG
AAATAAGGCGCTGCAATTCGGGAGGCGAGAAAAGAGACAACCATTCTGGA
TTGACGATGCTGCGGAAGCCACGATTGAAAGCTATCGTCTGCTCGCGTAT
CTGGGTGTTCATGTGGAAAAAGGCCATGTAGTGTATGTAGACCAGCTTGT
TGTGGTCATTAACCACACGCGCCTTGCCACCCGGATGCAAAGCGAGCGTG
ACAATTTTGCCCATTACATCCTGGTCCACGGAAAAGGTAAGGTTCAGATC
GGACACATCCTGCTTATAGTGTTTGATGAAGGTAAGACTGCGATACAACT
CGTTGTCCAGCGACGGCAGCTCGTCCATGCAGGAGTACAGGGCCTGTTGC
GTCTGGCCGAGCAGCTGGGAGAGGAAGAAGGAG

BS16617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 3237 CG5087-RA 2421..3237 833..17 4085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RB 3942 CG5087-RB 2689..3507 833..15 4095 100 Minus
CG5087-RA 3945 CG5087-RA 2692..3510 833..15 4095 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9001252..9001783 833..302 2660 100 Minus
3L 28110227 3L 9001843..9002131 303..15 1445 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:30:04 has no hits.

BS16617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:54 Download gff for BS16617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-PA 2421..3237 17..833 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:53 Download gff for BS16617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 2692..3510 15..833 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:34:23 Download gff for BS16617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 2692..3510 15..833 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:34:23 Download gff for BS16617.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9001252..9001783 302..833 100 -> Minus
3L 9001845..9002131 15..301 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:53 Download gff for BS16617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8994352..8994883 302..833 100 -> Minus
arm_3L 8994945..8995231 15..301 100   Minus

BS16617.5prime Sequence

858 bp (796 high quality bases) assembled on 2007-05-15

> BS16617.5prime
GAAGTTATCAGTCGACATGTTTGCCCAAAACCAAAAGGCCAGCTTCCTGG
AGCAGACAAAGGCGGCGCGGGAGGAGCGGGCACTGGAAAAGCGACGCGAA
CAGGCGGCCATCCTGCTGCAGTCCACGCTCAAGGGATATGCGGCGCGTAG
GAAGTACCAGAAACGAATCATACTCGATTTCGATGCCATGTTCACTGAGA
ATCATGACGATAAGGATGCGGAACTGGAACTCGTGGCAAGCAACGTCTAT
CCGGTGCTTCGTCGCTACCTCACCCAGATCAGGCTGGACAAGAGCGATGT
GCGTGCACGGGAGCGTCTGGAGCGCATCTGCCGTTACATCATCAAGGCAA
TGGAGTCGGAGAACACCAAGCTATCCTATGCCGCCCTCTGTCTTTTTAAG
GAACGCAGCCTGCCCTGGATCGCGCACATCAAGATACTGCTCACGAACTG
CCTGACATTGCTGCCGGAGCTGAAGCCGGAAAACCATGCCGACAGCTTGT
CCCTTGCCCTATTTCTGCACACACTGGTAGTCTTCACGGCGCCCAAATCC
TGGGCGATACTCAGGAATGCCCAGTTTGAGAAACTGCAGCCGGCCATGCA
AAAAATCTGTTGTAATATTCAAGGTCATCTGGTGCAGCACGATTTTTACA
AAATCATGCGGCTCGTTTTGATACGCGGCACTGTTCGCGAGGAGTTGTCT
GTAAAGCCCGTCACCCTGGTGGCCATCATTACACTTTGCCTTCGTCCCCT
GATCGATGGCAACTTCAGTCGTAATCTACTGGCAAAGTTTCTGTCGGAGA
TTCTGTCTGTGCCCGCTTTAATCTACCATCTGCGACAGAGTGTACCTCAG
TGCCTGGA

BS16617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 3237 CG5087-RA 1..842 17..858 4185 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-RB 3942 CG5087-RB 272..1113 17..858 4195 99.9 Plus
CG5087-RA 3945 CG5087-RA 272..1113 17..858 4195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8998663..8999152 172..661 2450 100 Plus
3L 28110227 3L 8999207..8999412 653..858 985 98.5 Plus
3L 28110227 3L 8998455..8998609 17..171 775 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:40:17 has no hits.

BS16617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:11 Download gff for BS16617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-PA 1..841 17..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:41 Download gff for BS16617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 266..1112 10..857 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:18 Download gff for BS16617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5087-RA 266..1112 10..857 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:18 Download gff for BS16617.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8999216..8999411 662..857 99   Plus
3L 8998449..8998609 10..171 98 -> Plus
3L 8998663..8999152 172..661 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:41 Download gff for BS16617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8991549..8991709 10..171 98 -> Plus
arm_3L 8991763..8992252 172..661 100 -> Plus
arm_3L 8992316..8992511 662..857 99   Plus

BS16617.pep Sequence

Translation from 16 to 3252

> BS16617.pep
MFAQNQKASFLEQTKAAREERALEKRREQAAILLQSTLKGYAARRKYQKR
IILDFDAMFTENHDDKDAELELVASNVYPVLRRYLTQIRLDKSDVRARER
LERICRYIIKAMESENTKLSYAALCLFKERSLPWIAHIKILLTNCLTLLP
ELKPENHADSLSLALFLHTLVVFTAPKSWAILRNAQFEKLQPAMQKICCN
IQGHLVQHDFYKIMRLVLIRGTVREELSVKPVTLVAIITLCLRPLIDGNF
SRNLLAKFLSEILSVPALIYHLQQSVPQCLEQFSSMGLLKKALSISGDVQ
WFEEFGTSMPGTKSLAFLGNIVNLFNIDGQGESKELAYPLLTETTTSLLE
LIPNTVTTKGVFTQWHELLGWHTPGPEPAQNQNVALIKKQFHMLWDHRCI
KLLLGDLLKQINLNYERIEFQSPQQPSISNLLRRALERSSTRGVNLMGVA
SSKQSKQQWRKLDSAEVVQVSRICGMYYAALNTLSQMKLDILTGICYSDN
VLYDIWLLITSLGPNCGMKEYLELLKSETNLQKPQTAMLMLFCDCMTHYV
TILDEHEMYTEQNPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHP
VFLSLHTLMLCLYRRDCRRPFTPPKHWLIPEVKPSTFINDLEKAKRNAML
LLAKMPHIIPHEDRVKLFRKFVQNEKAVMGLTESACASPRSALIVIHRDR
IVEDGYRQLAAQPTQALKGVIRVRFINQQGLHEAGIDQDGVFKEFLEETI
KKVFDPSLNLFKTTSDQRLYPSPISYVQDNHLELFEFVGRMLGKAVYEGI
VVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQDV
SDLNLTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNT
QIREQTIAFNRGFRSIVNPEWLSLFSPPELQRLISGDTSPLDLKDLQKHT
HYYGGFHDTHQVVCWLWDILAKDFTEEERKLFLKFVTSCSKPPLLGFAHL
EPPFSIRCVEVSDDEDTGDTIGSVIRGFFAIRKKDPLNRLPTSSTCFNLL
KLPNYQKKSTLRDKLRYAVSSNTGFELS*

BS16617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5087-PA 1078 CG5087-PA 1..1078 1..1078 5596 100 Plus
CG5087-PB 1077 CG5087-PB 1..1077 1..1078 5580 99.9 Plus
CG3356-PA 1122 CG3356-PA 652..1122 612..1078 799 36.4 Plus
CG42797-PF 434 CG42797-PF 23..431 637..1075 464 29.5 Plus
CG42797-PC 436 CG42797-PC 25..433 637..1075 464 29.5 Plus