Clone BS16621 Report

Search the DGRC for BS16621

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptCG8177-RB
Protein status:BS16621.pep: full length peptide match
Sequenced Size:3638

Clone Sequence Records

BS16621.complete Sequence

3638 bp assembled on 2009-12-07

GenBank Submission: KX800294

> BS16621.complete
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGC
AATTGGATGAGCTCACAGGCGTGGGCGAGGATCGCGAATGGAAGGAGACG
GCCCGTTGGATCAAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTG
GGGCAAGCCCCATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGC
GTCGCTGCCTGGAAACGGGCGTTGTCCTGCTCGATCTTAACGAGAAGGAC
CTGCCTGCCGTGGCCTATCGCGTGGTAGAACAGATGGTGATCGAGGACCT
GATTGACATCAATGACAAGCCATCGGTGATGCGTTCGCTGCTCCTGCGCC
ATCGCCATGTCAACGAACACCAAGGTGTGCTGCCCTTCACCAAGAGGAAG
TACAACAGCTACACCAGCCTGCAGAATTTGTCTGGCACGGATGACAAGAA
GATCAAGATTATGCCGGCCGCCGAAATTGGTGGCAGCAAGCGCAGCAATG
AGCTCAAGATCGACATGAAGGACGATATGTACTCCTCGTCACAGGAGGAT
CTCAAGAAGCTGCAGAATGACACGATCCTCAAGAGGATTCCAGCGGGTGC
TGAAGCCACCACAGTGCTGGTTGGTGCCGTAGAGTTCCTTGAGCAGCCTA
CCATTGCCTTTGTCCGTTTATCGGAGGGTGTCCTGATGCCCACATTGACC
GAGGTTCCTGTCCCAGTAAGATTCATGTTTGTTCTTTTGGGACCTCGTAA
CTTCGATTTGGACTACCATGAAGTGGGTCGTTCTATCTCCACGCTGATGG
CTAACGAGCATTTCCACTCCATTGCCTACAAAGCTGATGATCGCAAGGAT
CTGCTATCAGCCATCAATGAGTTCCTGGACGATTCTATCGTCCTGCCGCC
CGGTAATTGGGATCGCCACGATCTCTTGCCCTTCGAAGAGTTGAAGGCCA
AGAAGGATTGGATTCGCACGCGAAAGATTAAGGCACTGCAGGTGAAGCGA
GACAGTGAGATGATTAAGATTGGCAAGGATGAGGAGAAGGCATTGCTGGA
GAAGCAAACACTGGGAGCCATTGGATTCACGATTGGTGGAGGAGATGGTG
GTGGTGATGGCGACTCCGATGATGACAATGGCCGAAAGAAGAAGAAACCT
AGTCCGCTGGAGAAAACTGGACGTCTGTGGGGTGGTTTGAGGAACGATCT
TAAACGCAGAATGCCCATGTACAAGAGTGATATACTCGATGGCCTGAACA
CCGAAACCCTGGCTGCCACCATCTTTATGTACTTCGCTTGCCTCTCAACG
GCTATCACATTTGGAGGTCTCGTTTCCGCTAAGACAAACAGCTGGATTGG
TATCTCAGAGACTCTGATCTCGTGCTCCCTGGTGGGCATTGTTTTCCATT
GTCTGTCCTGCCAACCACTTGTGATCATTGGAACCACCGGACCACTGCTT
CTATTTGACGAAGCCCTCATGGTATTCTGTACGCAACATGAATTCGATTT
CTTGTCCCTAAGAGTTTACGTCGGAGTATGGTTAATAATAATAGCCCTAA
CTGTATCCGCCTTCGAGGGCAGTGTGTATGTTCGTCTGCTGACGAGATTC
ACTCAGGAGATATTCTCGGCTCTGATTACGCTCATCTATATTGTGGAAAC
ATTTATGAAACTGATTTCGATCTATAGGGAAAATCCCCTGCTATCTGACT
ACAATCTCCCTCCGCCGACATTGGTCGCCCACGAACATGCCACCAATGAA
AGCCTACTCAATGCGACGGCGAGTGTTACAACGAATATTACGCAGATGGT
AATGAACATTTCAACAACAGCCATGCCCATTGGTCCACCACCATTGCCCA
AGAATCAGCCGAACACCGCTTTATTCTGCACCATCCTCACATTGGCCACT
TTCGTGGTTGCCTACTACCTGAAGCTCTTCCGTAATTCCCACTTCTTGGG
TCGTAATGCTCGCCGTGCCCTCGGTGATTTCGGTGTACCAATCTCCATTG
CCATATTCGTGCTGGTGGACTACCTGGTGCCGGCTGTGTACACAGAGAAA
CTGGTGGTTCCGGAGGGTCTGTCGCCCAGCGATCCCTCTAAGCGCGGCTG
GTACATCGGTTTCGATACCTCTTCCACGTGGATACCATTTGCTTGTGTGA
TACCTGCCCTGCTCGTCTACATTCTTATCTTTATGGAGTCACAGATCTCC
GAGCTGATTGTGGACAAGCCTGATCGTGGCTTAAAGAAGGGTTCTGGTCT
CCACTGGGATATTGTGCTGCTTTGCCTGCTCAACTGCGCTTGCGGAATAT
TTGGAATGCCCTGGCATTGCGCCGCCACTGTAAGATCGGTGACTCATGTG
TCATCCGTCACCATTATGTCACGCACCCACGCTCCTGGTGAATCGCCCAG
GATCGTTGATGTTAAGGAGCAGCGCTTGTCCGGATTCTTTGTGTGTCTGA
TGATTGGACTATCGGTGCTGATGGCTCCGCTTCTTCGGTTGATACCCATG
GCCGTGCTCTTTGGAGTCTTCTTGTACATGGGAGTGGCCTCCATGAGCGG
AGTGCAGTTGTTCGAAAGAATAAGACTGTATTTCATGCCGGTCAAACATT
ATCCACCCACATCATACGTGAAGCGATTGCGTCCTTGGAAGCTGCATTTG
TTTACCACCATTCAGGTGCTGTGCCTGGTACTCCTCTGGAGTGTGAAGTC
GTCCCAATTCTCGCTGGCCTTCCCCTTCTTCCTGATCATGATGGTGCCGA
TACGGCAAAATTTGACAAAATTGTATAAGCCAGAGGAAATGCAAGCGTTG
GATGGCAGCGAGATGAAGAAGAACGACGACGACGAGCCCGATTTCTATGA
ACAAACCAACATACCAGCATAGAAGCTTTCTAGACCAT

BS16621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-RH 3606 CG8177-PH 1..3606 17..3622 18030 100 Plus
CG8177-RB 3606 CG8177-PB 1..3606 17..3622 18030 100 Plus
CG8177-RF 3606 CG8177-PF 1..3606 17..3622 18030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-RH 4869 CG8177-RH 344..3949 17..3622 18030 100 Plus
CG8177-RB 5173 CG8177-RB 418..4023 17..3622 18030 100 Plus
CG8177-RF 4515 CG8177-RF 838..4443 17..3622 18030 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9782873..9784627 1369..3123 8775 100 Plus
3L 28110227 3L 9779652..9779907 243..498 1280 100 Plus
3L 28110227 3L 9780764..9781008 789..1033 1225 100 Plus
3L 28110227 3L 9784950..9785180 3317..3547 1155 100 Plus
3L 28110227 3L 9782606..9782805 1172..1371 1000 100 Plus
3L 28110227 3L 9784696..9784891 3123..3318 980 100 Plus
3L 28110227 3L 9780534..9780697 627..790 820 100 Plus
3L 28110227 3L 9779444..9779593 93..242 750 100 Plus
3L 28110227 3L 9781075..9781218 1031..1174 720 100 Plus
3L 28110227 3L 9780121..9780253 497..629 665 100 Plus
3L 28110227 3L 9771842..9771919 17..94 390 100 Plus
3L 28110227 3L 9785241..9785316 3547..3622 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:16:40 has no hits.

BS16621.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:45 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 830..4435 17..3622 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:22 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 838..4443 17..3622 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:35 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 830..4435 17..3622 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:59 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
CG8177-RF 838..4443 17..3622 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:59 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9781078..9781218 1034..1174 100 -> Plus
3L 9782609..9782803 1175..1369 100 -> Plus
3L 9780766..9781008 791..1033 100 -> Plus
3L 9771842..9771919 17..94 100 -> Plus
3L 9779446..9779593 95..242 100 -> Plus
3L 9779652..9779907 243..498 100 -> Plus
3L 9780123..9780252 499..628 100 -> Plus
3L 9780536..9780697 629..790 100 -> Plus
3L 9782874..9784627 1370..3123 100 -> Plus
3L 9784697..9784891 3124..3318 100 -> Plus
3L 9784952..9785180 3319..3547 100 -> Plus
3L 9785242..9785316 3548..3622 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:22 Download gff for BS16621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9764942..9765019 17..94 100 -> Plus
arm_3L 9772546..9772693 95..242 100 -> Plus
arm_3L 9772752..9773007 243..498 100 -> Plus
arm_3L 9773223..9773352 499..628 100 -> Plus
arm_3L 9773636..9773797 629..790 100 -> Plus
arm_3L 9773866..9774108 791..1033 100 -> Plus
arm_3L 9774178..9774318 1034..1174 100 -> Plus
arm_3L 9775709..9775903 1175..1369 100 -> Plus
arm_3L 9775974..9777727 1370..3123 100 -> Plus
arm_3L 9777797..9777991 3124..3318 100 -> Plus
arm_3L 9778052..9778280 3319..3547 100 -> Plus
arm_3L 9778342..9778416 3548..3622 100   Plus

BS16621.5prime Sequence

797 bp (796 high quality bases) assembled on 2007-05-15

> BS16621.5prime
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTG

BS16621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-PI 3606 CG8177-RI 1..781 17..797 3905 100 Plus
CG8177-PC 3606 CG8177-RC 1..781 17..797 3905 100 Plus
CG8177-PF 3606 CG8177-RF 1..781 17..797 3905 100 Plus
CG8177-PG 3807 CG8177-RG 1..781 17..797 3905 100 Plus
CG8177-PB 3606 CG8177-RB 1..781 17..797 3905 100 Plus
CG8177-PA 3807 CG8177-RA 1..781 17..797 3905 100 Plus
CG8177-PH 3606 CG8177-RH 1..781 17..797 3905 100 Plus
CG8177-PD 3486 CG8177-RD 1..661 137..797 3305 100 Plus
CG8177-PE 3687 CG8177-RE 1..661 137..797 3305 100 Plus
CG8177-PJ 3501 CG8177-RJ 77..676 198..797 3000 100 Plus
CG8177-PK 3702 CG8177-RK 77..676 198..797 3000 100 Plus
CG8177-PJ 3501 CG8177-RJ 1..78 17..94 390 100 Plus
CG8177-PK 3702 CG8177-RK 1..78 17..94 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-RH 4869 CG8177-RH 344..1124 17..797 3905 100 Plus
CG8177-RA 5144 CG8177-RA 418..1198 17..797 3905 100 Plus
CG8177-RB 5173 CG8177-RB 418..1198 17..797 3905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9779652..9779907 243..498 1280 100 Plus
3L 28110227 3L 9780534..9780697 627..790 820 100 Plus
3L 28110227 3L 9779444..9779593 93..242 750 100 Plus
3L 28110227 3L 9780121..9780253 497..629 665 100 Plus
3L 28110227 3L 9771842..9771919 17..94 390 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:27:37 has no hits.

BS16621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:08 Download gff for BS16621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-PB 1..781 17..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:26 Download gff for BS16621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-RB 410..1198 9..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:08 Download gff for BS16621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8177-RB 410..1198 9..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:08 Download gff for BS16621.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9780536..9780702 629..797 97   Plus
3L 9771834..9771919 9..94 96 -> Plus
3L 9779446..9779593 95..242 100 -> Plus
3L 9779652..9779907 243..498 100 -> Plus
3L 9780123..9780252 499..628 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:26 Download gff for BS16621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9764934..9765019 9..94 96 -> Plus
arm_3L 9772546..9772693 95..242 100 -> Plus
arm_3L 9772752..9773007 243..498 100 -> Plus
arm_3L 9773223..9773352 499..628 100 -> Plus
arm_3L 9773636..9773802 629..797 97   Plus

BS16621.pep Sequence

Translation from 16 to 3621

> BS16621.pep
MSFSSASGRENNVRKLSFLGFNTKKKSGNEDPDEVLLDSEMDKVFAGNSA
RKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYESQTEPLNNAQ
NYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIPPSLSYDEQPT
DQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAGARRISVQPED
TALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQITISPFTNKKP
EVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEEGSDRWGKPHV
ASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQMVIEDLIDIND
KPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQNLSGTDDKKIKIMP
AAEIGGSKRSNELKIDMKDDMYSSSQEDLKKLQNDTILKRIPAGAEATTV
LVGAVEFLEQPTIAFVRLSEGVLMPTLTEVPVPVRFMFVLLGPRNFDLDY
HEVGRSISTLMANEHFHSIAYKADDRKDLLSAINEFLDDSIVLPPGNWDR
HDLLPFEELKAKKDWIRTRKIKALQVKRDSEMIKIGKDEEKALLEKQTLG
AIGFTIGGGDGGGDGDSDDDNGRKKKKPSPLEKTGRLWGGLRNDLKRRMP
MYKSDILDGLNTETLAATIFMYFACLSTAITFGGLVSAKTNSWIGISETL
ISCSLVGIVFHCLSCQPLVIIGTTGPLLLFDEALMVFCTQHEFDFLSLRV
YVGVWLIIIALTVSAFEGSVYVRLLTRFTQEIFSALITLIYIVETFMKLI
SIYRENPLLSDYNLPPPTLVAHEHATNESLLNATASVTTNITQMVMNIST
TAMPIGPPPLPKNQPNTALFCTILTLATFVVAYYLKLFRNSHFLGRNARR
ALGDFGVPISIAIFVLVDYLVPAVYTEKLVVPEGLSPSDPSKRGWYIGFD
TSSTWIPFACVIPALLVYILIFMESQISELIVDKPDRGLKKGSGLHWDIV
LLCLLNCACGIFGMPWHCAATVRSVTHVSSVTIMSRTHAPGESPRIVDVK
EQRLSGFFVCLMIGLSVLMAPLLRLIPMAVLFGVFLYMGVASMSGVQLFE
RIRLYFMPVKHYPPTSYVKRLRPWKLHLFTTIQVLCLVLLWSVKSSQFSL
AFPFFLIMMVPIRQNLTKLYKPEEMQALDGSEMKKNDDDEPDFYEQTNIP
A*

BS16621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG8177-PH 1201 CG8177-PH 1..1201 1..1201 6237 100 Plus
CG8177-PB 1201 CG8177-PB 1..1201 1..1201 6237 100 Plus
CG8177-PF 1201 CG8177-PF 1..1201 1..1201 6237 100 Plus
CG8177-PC 1201 CG8177-PC 1..1201 1..1201 6237 100 Plus
CG8177-PI 1201 CG8177-PI 1..1201 1..1201 6237 100 Plus