Clone Sequence Records
BS16621.complete Sequence
3638 bp assembled on 2009-12-07
GenBank Submission: KX800294
> BS16621.complete
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTGTGC
AATTGGATGAGCTCACAGGCGTGGGCGAGGATCGCGAATGGAAGGAGACG
GCCCGTTGGATCAAGTATGAGGAGGACGTGGAGGAGGGCTCCGATCGTTG
GGGCAAGCCCCATGTTGCCTCCCTCTCCTTCCACTCGCTGCTCAATTTGC
GTCGCTGCCTGGAAACGGGCGTTGTCCTGCTCGATCTTAACGAGAAGGAC
CTGCCTGCCGTGGCCTATCGCGTGGTAGAACAGATGGTGATCGAGGACCT
GATTGACATCAATGACAAGCCATCGGTGATGCGTTCGCTGCTCCTGCGCC
ATCGCCATGTCAACGAACACCAAGGTGTGCTGCCCTTCACCAAGAGGAAG
TACAACAGCTACACCAGCCTGCAGAATTTGTCTGGCACGGATGACAAGAA
GATCAAGATTATGCCGGCCGCCGAAATTGGTGGCAGCAAGCGCAGCAATG
AGCTCAAGATCGACATGAAGGACGATATGTACTCCTCGTCACAGGAGGAT
CTCAAGAAGCTGCAGAATGACACGATCCTCAAGAGGATTCCAGCGGGTGC
TGAAGCCACCACAGTGCTGGTTGGTGCCGTAGAGTTCCTTGAGCAGCCTA
CCATTGCCTTTGTCCGTTTATCGGAGGGTGTCCTGATGCCCACATTGACC
GAGGTTCCTGTCCCAGTAAGATTCATGTTTGTTCTTTTGGGACCTCGTAA
CTTCGATTTGGACTACCATGAAGTGGGTCGTTCTATCTCCACGCTGATGG
CTAACGAGCATTTCCACTCCATTGCCTACAAAGCTGATGATCGCAAGGAT
CTGCTATCAGCCATCAATGAGTTCCTGGACGATTCTATCGTCCTGCCGCC
CGGTAATTGGGATCGCCACGATCTCTTGCCCTTCGAAGAGTTGAAGGCCA
AGAAGGATTGGATTCGCACGCGAAAGATTAAGGCACTGCAGGTGAAGCGA
GACAGTGAGATGATTAAGATTGGCAAGGATGAGGAGAAGGCATTGCTGGA
GAAGCAAACACTGGGAGCCATTGGATTCACGATTGGTGGAGGAGATGGTG
GTGGTGATGGCGACTCCGATGATGACAATGGCCGAAAGAAGAAGAAACCT
AGTCCGCTGGAGAAAACTGGACGTCTGTGGGGTGGTTTGAGGAACGATCT
TAAACGCAGAATGCCCATGTACAAGAGTGATATACTCGATGGCCTGAACA
CCGAAACCCTGGCTGCCACCATCTTTATGTACTTCGCTTGCCTCTCAACG
GCTATCACATTTGGAGGTCTCGTTTCCGCTAAGACAAACAGCTGGATTGG
TATCTCAGAGACTCTGATCTCGTGCTCCCTGGTGGGCATTGTTTTCCATT
GTCTGTCCTGCCAACCACTTGTGATCATTGGAACCACCGGACCACTGCTT
CTATTTGACGAAGCCCTCATGGTATTCTGTACGCAACATGAATTCGATTT
CTTGTCCCTAAGAGTTTACGTCGGAGTATGGTTAATAATAATAGCCCTAA
CTGTATCCGCCTTCGAGGGCAGTGTGTATGTTCGTCTGCTGACGAGATTC
ACTCAGGAGATATTCTCGGCTCTGATTACGCTCATCTATATTGTGGAAAC
ATTTATGAAACTGATTTCGATCTATAGGGAAAATCCCCTGCTATCTGACT
ACAATCTCCCTCCGCCGACATTGGTCGCCCACGAACATGCCACCAATGAA
AGCCTACTCAATGCGACGGCGAGTGTTACAACGAATATTACGCAGATGGT
AATGAACATTTCAACAACAGCCATGCCCATTGGTCCACCACCATTGCCCA
AGAATCAGCCGAACACCGCTTTATTCTGCACCATCCTCACATTGGCCACT
TTCGTGGTTGCCTACTACCTGAAGCTCTTCCGTAATTCCCACTTCTTGGG
TCGTAATGCTCGCCGTGCCCTCGGTGATTTCGGTGTACCAATCTCCATTG
CCATATTCGTGCTGGTGGACTACCTGGTGCCGGCTGTGTACACAGAGAAA
CTGGTGGTTCCGGAGGGTCTGTCGCCCAGCGATCCCTCTAAGCGCGGCTG
GTACATCGGTTTCGATACCTCTTCCACGTGGATACCATTTGCTTGTGTGA
TACCTGCCCTGCTCGTCTACATTCTTATCTTTATGGAGTCACAGATCTCC
GAGCTGATTGTGGACAAGCCTGATCGTGGCTTAAAGAAGGGTTCTGGTCT
CCACTGGGATATTGTGCTGCTTTGCCTGCTCAACTGCGCTTGCGGAATAT
TTGGAATGCCCTGGCATTGCGCCGCCACTGTAAGATCGGTGACTCATGTG
TCATCCGTCACCATTATGTCACGCACCCACGCTCCTGGTGAATCGCCCAG
GATCGTTGATGTTAAGGAGCAGCGCTTGTCCGGATTCTTTGTGTGTCTGA
TGATTGGACTATCGGTGCTGATGGCTCCGCTTCTTCGGTTGATACCCATG
GCCGTGCTCTTTGGAGTCTTCTTGTACATGGGAGTGGCCTCCATGAGCGG
AGTGCAGTTGTTCGAAAGAATAAGACTGTATTTCATGCCGGTCAAACATT
ATCCACCCACATCATACGTGAAGCGATTGCGTCCTTGGAAGCTGCATTTG
TTTACCACCATTCAGGTGCTGTGCCTGGTACTCCTCTGGAGTGTGAAGTC
GTCCCAATTCTCGCTGGCCTTCCCCTTCTTCCTGATCATGATGGTGCCGA
TACGGCAAAATTTGACAAAATTGTATAAGCCAGAGGAAATGCAAGCGTTG
GATGGCAGCGAGATGAAGAAGAACGACGACGACGAGCCCGATTTCTATGA
ACAAACCAACATACCAGCATAGAAGCTTTCTAGACCAT
BS16621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-RH | 3606 | CG8177-PH | 1..3606 | 17..3622 | 18030 | 100 | Plus |
CG8177-RB | 3606 | CG8177-PB | 1..3606 | 17..3622 | 18030 | 100 | Plus |
CG8177-RF | 3606 | CG8177-PF | 1..3606 | 17..3622 | 18030 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:16:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-RH | 4869 | CG8177-RH | 344..3949 | 17..3622 | 18030 | 100 | Plus |
CG8177-RB | 5173 | CG8177-RB | 418..4023 | 17..3622 | 18030 | 100 | Plus |
CG8177-RF | 4515 | CG8177-RF | 838..4443 | 17..3622 | 18030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:16:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9782873..9784627 | 1369..3123 | 8775 | 100 | Plus |
3L | 28110227 | 3L | 9779652..9779907 | 243..498 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 9780764..9781008 | 789..1033 | 1225 | 100 | Plus |
3L | 28110227 | 3L | 9784950..9785180 | 3317..3547 | 1155 | 100 | Plus |
3L | 28110227 | 3L | 9782606..9782805 | 1172..1371 | 1000 | 100 | Plus |
3L | 28110227 | 3L | 9784696..9784891 | 3123..3318 | 980 | 100 | Plus |
3L | 28110227 | 3L | 9780534..9780697 | 627..790 | 820 | 100 | Plus |
3L | 28110227 | 3L | 9779444..9779593 | 93..242 | 750 | 100 | Plus |
3L | 28110227 | 3L | 9781075..9781218 | 1031..1174 | 720 | 100 | Plus |
3L | 28110227 | 3L | 9780121..9780253 | 497..629 | 665 | 100 | Plus |
3L | 28110227 | 3L | 9771842..9771919 | 17..94 | 390 | 100 | Plus |
3L | 28110227 | 3L | 9785241..9785316 | 3547..3622 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:16:40 has no hits.
BS16621.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:45 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RF | 830..4435 | 17..3622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:22 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RF | 838..4443 | 17..3622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:21:35 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RF | 830..4435 | 17..3622 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:59 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RF | 838..4443 | 17..3622 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:59 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9781078..9781218 | 1034..1174 | 100 | -> | Plus |
3L | 9782609..9782803 | 1175..1369 | 100 | -> | Plus |
3L | 9780766..9781008 | 791..1033 | 100 | -> | Plus |
3L | 9771842..9771919 | 17..94 | 100 | -> | Plus |
3L | 9779446..9779593 | 95..242 | 100 | -> | Plus |
3L | 9779652..9779907 | 243..498 | 100 | -> | Plus |
3L | 9780123..9780252 | 499..628 | 100 | -> | Plus |
3L | 9780536..9780697 | 629..790 | 100 | -> | Plus |
3L | 9782874..9784627 | 1370..3123 | 100 | -> | Plus |
3L | 9784697..9784891 | 3124..3318 | 100 | -> | Plus |
3L | 9784952..9785180 | 3319..3547 | 100 | -> | Plus |
3L | 9785242..9785316 | 3548..3622 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:22 Download gff for
BS16621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9764942..9765019 | 17..94 | 100 | -> | Plus |
arm_3L | 9772546..9772693 | 95..242 | 100 | -> | Plus |
arm_3L | 9772752..9773007 | 243..498 | 100 | -> | Plus |
arm_3L | 9773223..9773352 | 499..628 | 100 | -> | Plus |
arm_3L | 9773636..9773797 | 629..790 | 100 | -> | Plus |
arm_3L | 9773866..9774108 | 791..1033 | 100 | -> | Plus |
arm_3L | 9774178..9774318 | 1034..1174 | 100 | -> | Plus |
arm_3L | 9775709..9775903 | 1175..1369 | 100 | -> | Plus |
arm_3L | 9775974..9777727 | 1370..3123 | 100 | -> | Plus |
arm_3L | 9777797..9777991 | 3124..3318 | 100 | -> | Plus |
arm_3L | 9778052..9778280 | 3319..3547 | 100 | -> | Plus |
arm_3L | 9778342..9778416 | 3548..3622 | 100 | | Plus |
BS16621.5prime Sequence
797 bp (796 high quality bases) assembled on 2007-05-15
> BS16621.5prime
GAAGTTATCAGTCGACATGAGCTTCAGTTCGGCCAGCGGCAGGGAGAATA
ATGTCCGCAAATTATCCTTCCTGGGCTTCAATACCAAAAAGAAGTCTGGC
AATGAGGATCCCGACGAGGTGCTGCTGGACTCGGAAATGGACAAGGTCTT
TGCCGGCAACAGTGCGCGCAAGGACAAGTTCGATGTAAACACCTTCCAGG
ACAACTCCCAGCTGCCCATTGGATCCCGCAAGAAGAATAGCATCCGCACA
AACGATCTGAACATCGAGGAGGACTCGGAGTACGAGAGCCAAACGGAGCC
ATTGAATAATGCACAAAACTATGATGACATCCCCGAAGACTTCCCGCTAG
TCTCGGAGAGAGCCGGACACGGCGATCACTCGGACAACTCGGTGGACGAG
AAGCACGTCCAGTTTGGCGGCAAAAAGAAGATCCCGCCCAGTTTGAGCTA
TGATGAACAGCCCACGGACCAATCGCACGAACGTAAACGCAGAAGAAGCC
GCCATCAGTATTATAGACAACGTAAATTCTCACATCAGGACAGCGTGGAA
CCCAAAAACAAGCTCGAGGAAAACGGTGATGCAGGTGCGCGTCGCATCTC
TGTGCAGCCTGAGGACACGGCATTGGAGGAGGCTGATCTTAACGAGCTGA
GATCACATCGTTCGGACGACCCGCGTGCCCTGCGCCGCCATAAGATCCAT
CACTCATCCATCAAGTTGCGCGAGTTGCCCCAAATAACGATTTCCCCCTT
CACCAACAAGAAGCCCGAGGTGGATCATAGTCCTCATGAGATCTTTG
BS16621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-PI | 3606 | CG8177-RI | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PC | 3606 | CG8177-RC | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PF | 3606 | CG8177-RF | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PG | 3807 | CG8177-RG | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PB | 3606 | CG8177-RB | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PA | 3807 | CG8177-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PH | 3606 | CG8177-RH | 1..781 | 17..797 | 3905 | 100 | Plus |
CG8177-PD | 3486 | CG8177-RD | 1..661 | 137..797 | 3305 | 100 | Plus |
CG8177-PE | 3687 | CG8177-RE | 1..661 | 137..797 | 3305 | 100 | Plus |
CG8177-PJ | 3501 | CG8177-RJ | 77..676 | 198..797 | 3000 | 100 | Plus |
CG8177-PK | 3702 | CG8177-RK | 77..676 | 198..797 | 3000 | 100 | Plus |
CG8177-PJ | 3501 | CG8177-RJ | 1..78 | 17..94 | 390 | 100 | Plus |
CG8177-PK | 3702 | CG8177-RK | 1..78 | 17..94 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-RH | 4869 | CG8177-RH | 344..1124 | 17..797 | 3905 | 100 | Plus |
CG8177-RA | 5144 | CG8177-RA | 418..1198 | 17..797 | 3905 | 100 | Plus |
CG8177-RB | 5173 | CG8177-RB | 418..1198 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9779652..9779907 | 243..498 | 1280 | 100 | Plus |
3L | 28110227 | 3L | 9780534..9780697 | 627..790 | 820 | 100 | Plus |
3L | 28110227 | 3L | 9779444..9779593 | 93..242 | 750 | 100 | Plus |
3L | 28110227 | 3L | 9780121..9780253 | 497..629 | 665 | 100 | Plus |
3L | 28110227 | 3L | 9771842..9771919 | 17..94 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:27:37 has no hits.
BS16621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:08 Download gff for
BS16621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-PB | 1..781 | 17..797 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:26 Download gff for
BS16621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RB | 410..1198 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:22:08 Download gff for
BS16621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8177-RB | 410..1198 | 9..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:22:08 Download gff for
BS16621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9780536..9780702 | 629..797 | 97 | | Plus |
3L | 9771834..9771919 | 9..94 | 96 | -> | Plus |
3L | 9779446..9779593 | 95..242 | 100 | -> | Plus |
3L | 9779652..9779907 | 243..498 | 100 | -> | Plus |
3L | 9780123..9780252 | 499..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:26 Download gff for
BS16621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9764934..9765019 | 9..94 | 96 | -> | Plus |
arm_3L | 9772546..9772693 | 95..242 | 100 | -> | Plus |
arm_3L | 9772752..9773007 | 243..498 | 100 | -> | Plus |
arm_3L | 9773223..9773352 | 499..628 | 100 | -> | Plus |
arm_3L | 9773636..9773802 | 629..797 | 97 | | Plus |
BS16621.pep Sequence
Translation from 16 to 3621
> BS16621.pep
MSFSSASGRENNVRKLSFLGFNTKKKSGNEDPDEVLLDSEMDKVFAGNSA
RKDKFDVNTFQDNSQLPIGSRKKNSIRTNDLNIEEDSEYESQTEPLNNAQ
NYDDIPEDFPLVSERAGHGDHSDNSVDEKHVQFGGKKKIPPSLSYDEQPT
DQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEENGDAGARRISVQPED
TALEEADLNELRSHRSDDPRALRRHKIHHSSIKLRELPQITISPFTNKKP
EVDHSPHEIFVQLDELTGVGEDREWKETARWIKYEEDVEEGSDRWGKPHV
ASLSFHSLLNLRRCLETGVVLLDLNEKDLPAVAYRVVEQMVIEDLIDIND
KPSVMRSLLLRHRHVNEHQGVLPFTKRKYNSYTSLQNLSGTDDKKIKIMP
AAEIGGSKRSNELKIDMKDDMYSSSQEDLKKLQNDTILKRIPAGAEATTV
LVGAVEFLEQPTIAFVRLSEGVLMPTLTEVPVPVRFMFVLLGPRNFDLDY
HEVGRSISTLMANEHFHSIAYKADDRKDLLSAINEFLDDSIVLPPGNWDR
HDLLPFEELKAKKDWIRTRKIKALQVKRDSEMIKIGKDEEKALLEKQTLG
AIGFTIGGGDGGGDGDSDDDNGRKKKKPSPLEKTGRLWGGLRNDLKRRMP
MYKSDILDGLNTETLAATIFMYFACLSTAITFGGLVSAKTNSWIGISETL
ISCSLVGIVFHCLSCQPLVIIGTTGPLLLFDEALMVFCTQHEFDFLSLRV
YVGVWLIIIALTVSAFEGSVYVRLLTRFTQEIFSALITLIYIVETFMKLI
SIYRENPLLSDYNLPPPTLVAHEHATNESLLNATASVTTNITQMVMNIST
TAMPIGPPPLPKNQPNTALFCTILTLATFVVAYYLKLFRNSHFLGRNARR
ALGDFGVPISIAIFVLVDYLVPAVYTEKLVVPEGLSPSDPSKRGWYIGFD
TSSTWIPFACVIPALLVYILIFMESQISELIVDKPDRGLKKGSGLHWDIV
LLCLLNCACGIFGMPWHCAATVRSVTHVSSVTIMSRTHAPGESPRIVDVK
EQRLSGFFVCLMIGLSVLMAPLLRLIPMAVLFGVFLYMGVASMSGVQLFE
RIRLYFMPVKHYPPTSYVKRLRPWKLHLFTTIQVLCLVLLWSVKSSQFSL
AFPFFLIMMVPIRQNLTKLYKPEEMQALDGSEMKKNDDDEPDFYEQTNIP
A*
BS16621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8177-PH | 1201 | CG8177-PH | 1..1201 | 1..1201 | 6237 | 100 | Plus |
CG8177-PB | 1201 | CG8177-PB | 1..1201 | 1..1201 | 6237 | 100 | Plus |
CG8177-PF | 1201 | CG8177-PF | 1..1201 | 1..1201 | 6237 | 100 | Plus |
CG8177-PC | 1201 | CG8177-PC | 1..1201 | 1..1201 | 6237 | 100 | Plus |
CG8177-PI | 1201 | CG8177-PI | 1..1201 | 1..1201 | 6237 | 100 | Plus |