Clone Sequence Records
BS16627.3prime Sequence
825 bp (808 high quality bases) assembled on 2007-05-15
> BS16627.3prime
ATGGTCTAGAAAGCTTCTAGTCCATGTCATCGTCGTCATCGTCTGAAATA
GTGTACTTCTTTTGGGAGCGCTTGCGACGCGTCTGCTTCTTGGATGTGGT
AGCCGCTCCGCTGCTCACATTCGACGATGATTGCGTGGGCGTAGCGGGCG
CACTAGCCAGAGATTTGTTCAGTTTCAGCTTCATTTTGACAGCCGCCGCT
GAAGTGGTTGCAATCTCCTCGTCGTCGGAGCCGTCATCGCCACCATCGTC
GTCGTCGTTGTCCGAATTATCCGAACCTCCATTGCCGTGCGCTTCACCCG
TGTTATCTCCGGCTGCCACTGCGGCTGCATCCGCTGCAGCTGTTATCCTC
TGCCTGGCCCCAACGAATACCTTTTGCAGGGCAATCGAGTCCAGGTAAAT
CAGAGACGCCTCTTCGTTGTAGATCTGTGCATTCTGGCATAGCTGCATAA
AGTCCTTCTCCAGCTCGTTGAGATCGGCATACTTGCAGTCCTCAATGCGC
TGCAGGATTTTCTTAATATCAACTGGCCGCTTAATGATCTCGTAGTAGTC
GGGCAACCTCTGCCGCGAAGGCAACTTCATGAACGGTTCGGACAGGGTTC
GTCCATCTTGGTTGTGTTTGATAACCGCACTCATAATCTTGTGCATCTGC
TTCTTGGACCGCTTGTCCAGATTTTGGCGTCGTCGCCGTTTTAGGATCAA
CGAATCATCGTCGGACTCTTCCTTCCGATTCTTACGCTTTCGTCGCTTGC
GCTTCGAATCGTCTTCCTCCTCTTCCTCGTCGAACTCAGCGCCATCGTCG
ATGGCTTTCAGCCACTCCTTTTCAG
BS16627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5942-PC | 4905 | brm-RC | 4097..4905 | 825..17 | 4020 | 99.8 | Minus |
| CG5942-PD | 4905 | brm-RD | 4097..4905 | 825..17 | 4020 | 99.8 | Minus |
| CG5942-PA | 4917 | brm-RA | 4109..4917 | 825..17 | 4020 | 99.8 | Minus |
| CG5942-PB | 4917 | brm-RB | 4109..4917 | 825..17 | 4020 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RF | 5351 | CG5942-RF | 4248..5056 | 825..17 | 4030 | 99.9 | Minus |
| brm-RE | 5339 | CG5942-RE | 4236..5044 | 825..17 | 4030 | 99.9 | Minus |
| brm-RB | 5553 | CG5942-RB | 4450..5258 | 825..17 | 4030 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:23:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15970377..15971185 | 17..825 | 4030 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:23:25 has no hits.
BS16627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:25 Download gff for
BS16627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5942-PB | 4109..4917 | 17..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:40 Download gff for
BS16627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 4450..5260 | 12..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:53:40 Download gff for
BS16627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RB | 4450..5260 | 12..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:53:40 Download gff for
BS16627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15970375..15971185 | 12..825 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:40 Download gff for
BS16627.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15963475..15964285 | 12..825 | 99 | | Plus |
BS16627.complete Sequence
4937 bp assembled on 2010-07-15
GenBank Submission: KX802468
> BS16627.complete
GAAGTTATCAGTCGACATGGCCTCGCCCTCTCCGGCGAACAGTCCCATGC
CACCGCCACAGGCGCCCAGTCCGATGGCCCCGCCCTCGCAGAGTCCCGCC
CCCTCGCCGCACAGCCCGTATCCGCACCAGCAGCCGGGTCCACTGCAAGG
ACCTCCGCCACCCGGACATCCCGGTGCCTACGGACATCCCATGCAGCACG
GACCACCCGGCCAGGGTCCACCCGGGCATCATATGCCACCGCACCACCAG
GGGATGAGTCCGCACATGGGAATGCAGATGCCGCCGACGGGACCGAACAT
GTCCCCCTACCAAACCCACGGAATGCCACCCAATGCACCCACACAACCCT
GCATAGTGTCACCTGGTGGCCCACCTGGAGGCCCGCCACCTCCGGAGCGC
TCGAGCCAGGAGAACCTGCACGCGCTTCAACGCGCCATTGATTCAATGGA
GGAAAAGGGCTTGCAAGAGGATCCTCGCTACTCGCAGCTGCTGGCAATGC
GAGCAACCTCGAAGCATCAGCACCTTAATGGCAATCAGGTTAACTTGTTG
CGCACACAGATCACCGCCTATCGGTTGCTGGCGCGGAACAAGCCCATATC
CATGCAGATGCAGCAGGCGTTGCAGGCCGCACAGCAACAGCCACCGCCAG
GACCTCCAATTGGGCCACCTGGAGCACCAGGCGGACCGCCACCAGGGAGC
CAGCATGCAGGACAACCGCCCGTGCCGCCGCAACAACAGCAACAACCGCC
ACCTTCAGCAGGAACTCCACCCCAGTGCTCCACGCCGCCCGCAAGCAATC
CTTATGGACCGCCAGTTCCTGGCCAGAAAATGCAGGTAGCGCCACCACCG
CCACACATGCAACAGGGACAGCCATTGCCACCACAACCGCCACAAGTGGG
TGGACCCCCGCCTATACAACAGCAGCAACCACCTCAGCAGCAGCAACAAC
AGTCGCAGCCCCCGCCACCGGAGCCACATCAGCACCAGTTGCCAAACGGA
GGCAAACCCCTGAGTATGGGGCCATCTGGCGGGCAACCACTAATACCTTC
ATCACCCATGCAGCCACAAGTGAGAGGGACACTGCCAGGAATGCCGCCAG
GTAGTCAGGTTCCGCAACCAGGAGGAGGTCCTCAGCGACAGGTACCACCT
GCGGGCATGCCGATGCCCAAGCCCAATCGCATTACAACGGTGGCCAAACC
CGTCGGTCTGGATCCCATAACATTGCTGCAGGAAAGGGAGAATAGGATAG
CAGCCAGGATATCATTGCGCATGCAGGAGTTGCAGCGACTGCCGGCCACG
ATGTCCGAGGATCTGCGTCTGCAAGCGGCTATCGAGTTGAGGGCCCTAAG
GGTCTTGAACTTCCAGCGACAGCTGCGTATGGAGTTTGTTCAGTGCACGA
GACGAGATACCACTTTGGAAACAGCGTTAAACATTAAGCTCTACAAGAGG
ACCAAGAGGCAGGGCCTGCGGGAGGCACGTGCCACCGAGAAGCTAGAGAA
GCAACAGAAGCTAGAGGCTGAACGAAAGCGTCGCCAAAAGCATCTGGAGT
TCTTGGCTGCTGTGCTTCAGCACGGCAAGGATCTAAGGGAGTTCCACAGA
AATAATAAGGCCCAGCTTGCAAGGATGAACAAGGCCGTGATGAATCACCA
CGCCAATGCCGAGCGTGAACAGAAGAAGGAACAAGAGCGCATCGAAAAGG
AACGTATGCGACGTCTGATGGCCGAGGATGAGGAGGGTTACCGCAAGCTG
ATTGATCAAAAGAAGGACAAGAGATTGGCTTTCCTACTGTCGCAGACAGA
TGAGTATATTAGCAACCTAACTCAGATGGTGAAACAGCACAAGGACGACC
AGATGAAGAAAAAGGAGGAGGAGGGCAAGCGGCTGATACAGTTCAAAAAG
GAGCTGCTGATGAGCGGAGAGTACATTGGCATTGATGAGGGCAGCATTGT
TGCCGATATGCGGGTACATGTGGTGGAACAGTGCACGGGTAAGAAACTCA
CCGGCGATGATGCACCCATGCTGAAGCACTTGCACCGCTGGCTGAATATG
CATCCTGGCTGGGATTGGATCGACGACGAGGAGGACAGCTGTGGGAGCAA
CGACGATCATAAACCCAAGGTGGAGGAGCAACCAACGGCAACAGAAGATG
CCACCGACAAAGCGCAGGCGACGGGCAACGATGAGGATGCCAAGGATCTA
ATTACCAAGGCCAAGGTGGAGGACGATGAGTACAGGACGGAGGAACAGAC
GTACTACAGCATCGCTCATACCATTCATGAAAAGGTTGTGGAGCAGGCCA
GCATCATGGTTAATGGTACGCTCAAGGAATACCAGATCAAAGGCTTGGAG
TGGTTGGTTTCGCTGTACAATAACAATCTAAATGGTATTTTGGCCGATGA
AATGGGTTTGGGTAAAACCATTCAAACCATTTCGCTGGTAACCTACCTTA
TGGATCGAAAGAAGGTTATGGGTCCTTACTTGATTATTGTACCACTCTCC
ACCCTGCCCAATTGGGTGCTGGAATTCGAGAAGTGGGCGCCAGCCGTGGG
TGTAGTCAGCTACAAGGGCAGTCCGCAGGGAAGGCGATTGCTGCAAAATC
AAATGAGAGCAACCAAGTTCAATGTGCTGTTAACCACATATGAGTACGTG
ATTAAGGACAAGGCGGTGCTGGCCAAGATCCAGTGGAAATACATGATTAT
CGACGAGGGTCACCGCATGAAGAACCATCACTGCAAACTCACCCAGGTGC
TGAACACCCACTACATTGCCCCCTATCGGTTACTTCTCACGGGTACACCT
CTGCAAAACAAGCTTCCCGAGTTGTGGGCGCTACTTAATTTCCTGCTGCC
CTCGATCTTTAAGTCCTGCTCCACATTTGAACAGTGGTTCAATGCGCCAT
TTGCCACCACTGGCGAGAAGGTCGAGCTAAACGAGGAGGAGACCATCCTT
ATCATTCGTCGTCTGCACAAGGTTCTTCGTCCTTTCCTGTTGCGTCGCCT
CAAAAAGGAGGTAGAGCACCAGCTGCCCGACAAGGTCGAGTACATCATCA
AGTGCGACATGTCCGCGCTGCAACGCGTTCTCTACAAGCACATGCAGAGC
AAGGGTGTCCTGCTCACCGATGGTTCCGAGAAGGGCAAGCACGGCAAGGG
AGGCGCTAAGGCGCTGATGAACACGATCGTACAGCTGCGCAAGCTGTGCA
ACCATCCGTTTATGTTCCAGCACATAGAAGAGAAGTACTGCGATCACACT
GGCGGCCACGGAGTTGTATCCGGACCGGATCTGTATCGTGTCTCTGGCAA
ATTCGAGCTGCTTGATCGCATCCTGCCCAAGCTGAAGGCGACCAATCATC
GCGTGCTGCTCTTCTGTCAGATGACCCAATGCATGACCATCATCGAAGAC
TACCTGGGATGGCGCCAATTCGGCTACCTTCGACTCGACGGTACCACGAA
GGCCGAGGATCGTGGCGAACTACTGCGAAAATTCAACGCCAAAGGCTCGG
ATGTATTTGTCTTTTTGCTATCTACCCGAGCTGGTGGTTTGGGTCTTAAT
CTGCAGACCGCCGATACTGTAGTAATCTTCGACTCCGATTGGAATCCCCA
TCAGGATCTGCAAGCCCAGGATCGTGCCCATCGTATTGGTCAACGTAACG
AGGTGCGCGTCCTGCGACTAATGACAGTCAACTCGGTGGAAGAGCGCATC
TTGGCAGCAGCCAGGTACAAGCTGAACATGGACGAGAAGGTCATCCAGGC
TGGTATGTTCGATCAGAAGTCAACGGGTAGCGAGCGACAGCAGTTCCTAC
AAACGATTCTGCACCAGGATGACAACGAAGAGGAGGAGGAAAATGAGGTG
CCCGATGACGAAATGATCAACATGATGATCGCCCGCAGCGAGGAGGAGAT
TGAAATATTTAAGCGCATGGATGCTGAGCGCAAGAAGGAGGATGAGGAGA
TCCATCCGGGTAGGGAACGTCTGATCGATGAGTCCGAGCTACCCGACTGG
TTGACAAAGGATGATGACGAAGTAGAGCGTTTCCACTATCAGTACGACGA
GGATACCATTCTAGGTCGAGGCTCCCGGCAGCGAAAGGAAGTAGACTACA
CCGATAGTTTGACTGAAAAGGAGTGGCTGAAAGCCATCGACGATGGCGCT
GAGTTCGACGAGGAAGAGGAGGAAGACGATTCGAAGCGCAAGCGACGAAA
GCGTAAGAATCGGAAGGAAGAGTCCGACGATGATTCGTTGATCCTAAAAC
GGCGACGACGCCAAAATCTGGACAAGCGGTCCAAGAAGCAGATGCACAAG
ATTATGAGTGCGGTTATCAAACACAACCAAGATGGACGAACCCTGTCCGA
ACCGTTCATGAAGTTGCCTTCGCGGCAGAGGTTGCCCGACTACTACGAGA
TCATTAAGCGGCCAGTTGATATTAAGAAAATCCTGCAGCGCATTGAGGAC
TGCAAGTATGCCGATCTCAACGAGCTGGAGAAGGACTTTATGCAGCTATG
CCAGAATGCACAGATCTACAACGAAGAGGCGTCTCTGATTTACCTGGACT
CGATTGCCCTGCAAAAGGTATTCGTTGGGGCCAGGCAGAGGATAACAGCT
GCAGCGGATGCAGCCGCAGTGGCAGCCGGAGATAACACGGGTGAAGCGCA
CGGCAATGGAGGTTCGGATAATTCGGACAACGACGACGACGATGGTGGCG
ATGACGGCTCCGACGACGAGGAGATTGCAACCACTTCAGCGGCGGCTGTC
AAAATGAAGCTGAAACTGAACAAATCTCTGGCTAGTGCGCCCGCTACGCC
CACGCAATCATCGTCGAATGTGAGCAGCGGAGCGGCTACCACATCCAAGA
AGCAGACGCGTCGCAAGCGCTCCCAAAAGAAGTACACTATTTCAGACGAT
GACGACGATGACATGGACTAGAAGCTTTCTAGACCAT
BS16627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RD | 4905 | CG5942-PD | 1..4905 | 17..4921 | 24510 | 100 | Plus |
| brm-RC | 4905 | CG5942-PC | 1..4905 | 17..4921 | 24510 | 100 | Plus |
| brm-RE | 4977 | CG5942-PE | 1..4917 | 17..4921 | 24355 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-RD | 5322 | CG5942-RD | 123..5027 | 17..4921 | 24510 | 100 | Plus |
| brm-RC | 5327 | CG5942-RC | 128..5032 | 17..4921 | 24510 | 100 | Plus |
| brm-RE | 5339 | CG5942-RE | 128..5044 | 17..4921 | 24355 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15972158..15975096 | 3273..335 | 14695 | 100 | Minus |
| 3L | 28110227 | 3L | 15970377..15971236 | 4921..4062 | 4285 | 99.9 | Minus |
| 3L | 28110227 | 3L | 15971292..15972086 | 4066..3272 | 3975 | 100 | Minus |
| 3L | 28110227 | 3L | 15982266..15982508 | 259..17 | 1215 | 100 | Minus |
| 3L | 28110227 | 3L | 15982122..15982199 | 335..258 | 390 | 100 | Minus |
| 2R | 25286936 | 2R | 12638652..12638771 | 3524..3643 | 225 | 79.2 | Plus |
| 2R | 25286936 | 2R | 12637975..12638045 | 2781..2851 | 190 | 84.5 | Plus |
Blast to na_te.dros performed 2014-11-28 04:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6681..6883 | 794..988 | 221 | 60.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2884 | 728..996 | 218 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6900 | 848..987 | 205 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2470 | 813..996 | 202 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6877 | 860..1001 | 191 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6749..6913 | 824..988 | 185 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2513 | 836..994 | 184 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 917..996 | 184 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2378 | 913..988 | 182 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6862 | 854..997 | 178 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6764..6852 | 917..1004 | 172 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6792 | 914..987 | 171 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2407 | 917..987 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6807 | 917..987 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6828 | 917..987 | 166 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2431 | 855..984 | 164 | 58.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2392 | 916..987 | 162 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6952 | 824..982 | 162 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1526..1591 | 904..969 | 159 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1134 | 917..987 | 157 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1516..1587 | 915..986 | 153 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2449 | 622..760 | 152 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6823 | 916..988 | 149 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1078..1144 | 916..988 | 145 | 69.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2636..2915 | 724..1005 | 136 | 55 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 914..1037 | 855..979 | 136 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6898 | 824..952 | 133 | 62.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 130..195 | 916..978 | 133 | 71.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9160..9225 | 916..978 | 133 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1146 | 869..951 | 126 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6771 | 936..987 | 125 | 71.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1095..1163 | 918..983 | 122 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1158 | 839..951 | 121 | 60.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1122 | 921..987 | 120 | 67.6 | Plus |
BS16627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 13:47:29 Download gff for
BS16627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RD | 123..5027 | 17..4921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:08 Download gff for
BS16627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RC | 128..5032 | 17..4921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:53:41 Download gff for
BS16627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| brm-RC | 128..5032 | 17..4921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:53:41 Download gff for
BS16627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15970377..15971233 | 4065..4921 | 99 | <- | Minus |
| 3L | 15971294..15972085 | 3273..4064 | 100 | <- | Minus |
| 3L | 15972159..15975096 | 335..3272 | 100 | <- | Minus |
| 3L | 15982123..15982199 | 258..334 | 100 | <- | Minus |
| 3L | 15982268..15982508 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:08 Download gff for
BS16627.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15963477..15964333 | 4065..4921 | 99 | <- | Minus |
| arm_3L | 15964394..15965185 | 3273..4064 | 100 | <- | Minus |
| arm_3L | 15965259..15968196 | 335..3272 | 100 | <- | Minus |
| arm_3L | 15975223..15975299 | 258..334 | 100 | <- | Minus |
| arm_3L | 15975368..15975608 | 17..257 | 100 | | Minus |
BS16627.pep Sequence
Translation from 16 to 4920
> BS16627.pep
MASPSPANSPMPPPQAPSPMAPPSQSPAPSPHSPYPHQQPGPLQGPPPPG
HPGAYGHPMQHGPPGQGPPGHHMPPHHQGMSPHMGMQMPPTGPNMSPYQT
HGMPPNAPTQPCIVSPGGPPGGPPPPERSSQENLHALQRAIDSMEEKGLQ
EDPRYSQLLAMRATSKHQHLNGNQVNLLRTQITAYRLLARNKPISMQMQQ
ALQAAQQQPPPGPPIGPPGAPGGPPPGSQHAGQPPVPPQQQQQPPPSAGT
PPQCSTPPASNPYGPPVPGQKMQVAPPPPHMQQGQPLPPQPPQVGGPPPI
QQQQPPQQQQQQSQPPPPEPHQHQLPNGGKPLSMGPSGGQPLIPSSPMQP
QVRGTLPGMPPGSQVPQPGGGPQRQVPPAGMPMPKPNRITTVAKPVGLDP
ITLLQERENRIAARISLRMQELQRLPATMSEDLRLQAAIELRALRVLNFQ
RQLRMEFVQCTRRDTTLETALNIKLYKRTKRQGLREARATEKLEKQQKLE
AERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKAVMNHHANAER
EQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISN
LTQMVKQHKDDQMKKKEEEGKRLIQFKKELLMSGEYIGIDEGSIVADMRV
HVVEQCTGKKLTGDDAPMLKHLHRWLNMHPGWDWIDDEEDSCGSNDDHKP
KVEEQPTATEDATDKAQATGNDEDAKDLITKAKVEDDEYRTEEQTYYSIA
HTIHEKVVEQASIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGK
TIQTISLVTYLMDRKKVMGPYLIIVPLSTLPNWVLEFEKWAPAVGVVSYK
GSPQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHR
MKNHHCKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKS
CSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE
HQLPDKVEYIIKCDMSALQRVLYKHMQSKGVLLTDGSEKGKHGKGGAKAL
MNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLD
RILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRG
ELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQA
QDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQAGMFDQ
KSTGSERQQFLQTILHQDDNEEEEENEVPDDEMINMMIARSEEEIEIFKR
MDAERKKEDEEIHPGRERLIDESELPDWLTKDDDEVERFHYQYDEDTILG
RGSRQRKEVDYTDSLTEKEWLKAIDDGAEFDEEEEEDDSKRKRRKRKNRK
EESDDDSLILKRRRRQNLDKRSKKQMHKIMSAVIKHNQDGRTLSEPFMKL
PSRQRLPDYYEIIKRPVDIKKILQRIEDCKYADLNELEKDFMQLCQNAQI
YNEEASLIYLDSIALQKVFVGARQRITAAADAAAVAAGDNTGEAHGNGGS
DNSDNDDDDGGDDGSDDEEIATTSAAAVKMKLKLNKSLASAPATPTQSSS
NVSSGAATTSKKQTRRKRSQKKYTISDDDDDDMD*
BS16627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| brm-PD | 1634 | CG5942-PD | 1..1634 | 1..1634 | 8647 | 100 | Plus |
| brm-PC | 1634 | CG5942-PC | 1..1634 | 1..1634 | 8647 | 100 | Plus |
| brm-PF | 1642 | CG5942-PF | 1..1642 | 1..1634 | 8628 | 99.5 | Plus |
| brm-PE | 1658 | CG5942-PE | 1..1638 | 1..1634 | 8628 | 99.7 | Plus |
| brm-PB | 1638 | CG5942-PB | 1..1638 | 1..1634 | 8628 | 99.7 | Plus |
