Clone Sequence Records
BS16629.3prime Sequence
903 bp (793 high quality bases) assembled on 2007-05-15
> BS16629.3prime
ATGGTCTAGAAAGCTTTCAGCAATTAGATGTGCAATCACCATCTAGTGTA
GCAGCAACATTTCCTAATTTTCGTGAAAGATGCATCTTTCGGCAATTAAT
ATCAGTTTCAAGTGATTCCATAATCTGATCCTTATATTTAGTTATATAAA
TGTATAACTCTTTTAATGCAGAAATAGTATCAAACTCTTCGTTTTGCCTT
ACTGATAGCTGTTGCATAGCTGTACTCATTTCCTGGTCGCTTATTTGTGG
AAGCCTTGATACATCGCGGTAAAACTCTTTGACCATAATTCTATAGTTTG
GAATATCCTTAGCAAACAGCAACTTATTCGACGGCGAATCTTTTCCAAGT
CTGTGCTCTGATGTTGAACAAGCGTCCATAAATGTTTGTGCAATGACACT
TAAACAGGAATCAACGCTGTATGTTTTATTTACATCAAATATAAAATCCG
GATTTTTTATAAAATTAACCCAGAATCGAAGGGGCAAACAATTTGACTTC
CAAGCGTGCACAATATCAGTATCAGCAATATCATGGCGTCGCGCAGCTTC
ATCAAGTAAGTCAAAGAGCCATTTAACGGCAGGTGGCAACTCCTCATTAA
CAGTTAAAATAATTGAGAAAAAATCATCAACAAATTTTTGTATAGTTCCT
TTTGTGGCCAGAAGACGTGTAAGGTAAACTTCTGGTATTGTTTTGTTCAC
CCTGTCATTACAATTATTAACGACATGCGATTGAAATGCTGGTGATCCTC
CGGATAACACGGAATTTTTAATGTTCATATAATGATCAGGTATATTGGGC
TTAACAAGATGGTAAACCCGGGGCTGCTGCAAACCTGATTCGATATCATT
ATTAATTATAATATGACTTTGCGAANTGTTATAAAATAAAAATTGTGGTA
TGG
BS16629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17245-PA | 6156 | plexB-RA | 5293..6156 | 880..17 | 4301 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexB-RB | 7050 | CG17245-RB | 5623..6510 | 903..17 | 4404 | 99.8 | Minus |
| PlexB-RA | 6716 | CG17245-RA | 5623..6510 | 903..17 | 4404 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 20969..21553 | 307..890 | 2864 | 99.7 | Plus |
| 4 | 1348131 | 4 | 35873..36457 | 307..890 | 2864 | 99.7 | Plus |
| 4 | 1348131 | 4 | 28906..29490 | 307..890 | 2834 | 99.3 | Plus |
| 4 | 1348131 | 4 | 7992..8281 | 602..890 | 1389 | 99.3 | Plus |
| 4 | 1348131 | 4 | 7744..7994 | 307..557 | 1255 | 100 | Plus |
| 4 | 1348131 | 4 | 6541..6725 | 125..309 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 13323..13507 | 125..309 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 33191..33375 | 125..309 | 925 | 100 | Plus |
| 4 | 1348131 | 4 | 27703..27887 | 125..309 | 910 | 99.5 | Plus |
| 4 | 1348131 | 4 | 13150..13259 | 17..126 | 550 | 100 | Plus |
| 4 | 1348131 | 4 | 27530..27639 | 17..126 | 550 | 100 | Plus |
| 4 | 1348131 | 4 | 33018..33127 | 17..126 | 550 | 100 | Plus |
| 4 | 1348131 | 4 | 6368..6477 | 17..126 | 535 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:18:46 has no hits.
BS16629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:08 Download gff for
BS16629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17245-PA | 5269..6156 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:43 Download gff for
BS16629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexB-RA | 5623..6510 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:58 Download gff for
BS16629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PlexB-RA | 5623..6510 | 17..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:58 Download gff for
BS16629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 33018..33125 | 17..124 | 100 | <- | Plus |
| 4 | 33191..33373 | 125..307 | 100 | <- | Plus |
| 4 | 35874..36457 | 308..890 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:43 Download gff for
BS16629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 53644..53751 | 17..124 | 100 | <- | Plus |
| arm_4 | 53817..53999 | 125..307 | 100 | <- | Plus |
| arm_4 | 56500..57083 | 308..890 | 99 | <- | Plus |
BS16629.5prime Sequence
795 bp (793 high quality bases) assembled on 2007-05-15
> BS16629.5prime
GAAGTTATCAGTCGACATGTTGCGAAAGGAATTGTATTGTGCAAACATTA
TACATGTTTTACATGTACTGTGTATTATTATCATACTCGGTTCTCAGCAT
TATTGCGTTAACTGCATTGAAGAACTGCCGGCTCAGGCGTTATCTCCCTT
AAATGACATAGTCGCCCAGTTTAACTTGCCATCAATACCAGTTCAATCAA
CAGCTTCCAGCTATGGCAATCGATCAATTGGAAACAATATAGAAAGTGTT
AGAGACTCTCAATCTAAAAATTATTTTACTCACATGAGCTTCGACTTTAT
GCACAATGTTTTGTTTGCGGGTGCTACAAATAAAATACTTAAACTTAACG
AAAACCTTCGAGTGCTGGCCGAGGCTGTTACTGGGCCGTTACATGATTCC
CCGCAATGTCACGCTGGAGGCTGTCCGGAAGATATTGAGACATCGCTTGT
CAATAACTTCAACAAAATTCTAGTAGTAAGCTACGCTCACGATGGTATTC
TCATAGCGTGTGGAAGCATTCGACAAGGAGCCTGCGAAATTTACAGCCTG
CCACGTTTTCCGGCAACGCCCCAGTTTTTTGCAGTTCCATTGGCTGCTAA
CGATGAAAACGCGTCTACATATGCATTTGTAGGTCCGGCGAGATATGCGT
GGAAAGAAGAGGATATTTTATATGTGGGGACAACATTTACGAATGTTGGT
GATTATCGTCATGACGTGCCAGCCATTTCGTCCCGCCGACTTGATGATTT
AAACTATGCTGAATTTTCAATACAGCAGTCAATTATAAATATCGA
BS16629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17245-PA | 6156 | plexB-RA | 1..779 | 17..795 | 3895 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexB-RB | 7050 | CG17245-RB | 355..1133 | 17..795 | 3895 | 100 | Plus |
| PlexB-RA | 6716 | CG17245-RA | 355..1133 | 17..795 | 3895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 42913..43424 | 528..17 | 2560 | 100 | Minus |
| 4 | 1348131 | 4 | 41018..41287 | 795..526 | 1350 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:27:12 has no hits.
BS16629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:20 Download gff for
BS16629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17245-PA | 1..778 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:45 Download gff for
BS16629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexB-RA | 355..1132 | 17..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:48:57 Download gff for
BS16629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PlexB-RA | 355..1132 | 17..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:48:57 Download gff for
BS16629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 41019..41285 | 528..794 | 100 | <- | Minus |
| 4 | 42914..43424 | 17..527 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:45 Download gff for
BS16629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 61645..61911 | 528..794 | 100 | <- | Minus |
| arm_4 | 63540..64050 | 17..527 | 100 | | Minus |
BS16629.complete Sequence
6188 bp assembled on 2009-12-07
GenBank Submission: KX800611
> BS16629.complete
GAAGTTATCAGTCGACATGTTGCGAAAGGAATTGTATTGTGCAAACATTA
TACATGTTTTACATGTACTGTGTATTATTATCATACTCGGTTCTCAGCAT
TATTGCGTTAACTGCATTGAAGAACTGCCGGCTCAGGCGTTATCTCCCTT
AAATGACATAGTCGCCCAGTTTAACTTGCCATCAATACCAGTTCAATCAA
CAGCTTCCAGCTATGGCAATCGATCAATTGGAAACAATATAGAAAGTGTT
AGAGACTCTCAATCTAAAAATTATTTTACTCACATGAGCTTCGACTTTAT
GCACAATGTTTTGTTTGCGGGTGCTACAAATAAAATACTTAAACTTAACG
AAAACCTTCGAGTGCTGGCCGAGGCTGTTACTGGGCCGTTACATGATTCC
CCGCAATGTCACGCTGGAGGCTGTCCGGAAGATATTGAGACATCGCTTGT
CAATAACTTCAACAAAATTCTAGTAGTAAGCTACGCTCACGATGGTATTC
TCATAGCGTGTGGAAGCATTCGACAAGGAGCCTGCGAAATTTACAGCCTG
CCACGTTTTCCGGCAACGCCCCAGTTTTTTGCAGTTCCATTGGCTGCTAA
CGATGAAAACGCGTCTACATATGCATTTGTAGGTCCGGCGAGATATGCGT
GGAAAGAAGAGGATATTTTATATGTGGGGACAACATTTACGAATGTTGGT
GATTATCGTCATGACGTGCCAGCCATTTCGTCCCGCCGACTTGATGATTT
AAACTATGCTGAATTTTCAATACAGCAGTCAATTATAAATATCGATGTAA
AATATCGGGATCATTTTCTAGTCGATTATATTTACGGCTTTAATTCTTCT
GAATATGCGTACTTCATAATTGTTCAAAAAAAATCACATTTAGCTGATGA
GGCCGGTTATGTAACACGCTTGGCACGCATTTGCATTACAGATCCTAATT
ACGACAGCTATACTGAAATAACTGTTCAATGCACTGCAACTGAAAACAAT
GTTGACTACAATATTGTAAGGGATGCGAAAGTAACTCCAGCCAGCCACAA
ATTGGCGCAAAAAATGGGCATAAAAAAAGACGATCACGTTTTAGTAACGG
TTTTTTCGCCCTCAAGAGAAATAAGTAATCAGCCAGAAAGTAAGTCTGCT
ATGTGTATATATAGCATTAAAGATATTGAAGACATGTTCATTGAAAATAT
CCATCTGTGTTTTAACGGAACCACAAAAGATCGAAATTTGGGCTATATAT
CCGGCACCATTAATGATGGCAGATGTCCAATAGTTGGTTCGCTCGGTAAC
ATTTACAACTTTTGCTCTGTGGGACTTAAAATAAGCGGAGTATCCCCAAT
CACTGCACACGCACTTTTTCATTTTGATAATGTTTCAGTTACGTCAGTCA
CAGCAACTTCAACGACTGATCAGCAGCATTCTCTTGCATTTCTTGGAACG
AACATGGGAGTAATCAAAAAAGTTTTATTATCTGGCCAAAGTCCGGGCGA
GTACGAGGAAATAGTTGTGGATGCTGGAAATCGTATACTACCAAATACAA
TGATGTCGCCAAAAAAAGATTTTCTTTACGTACTTTCTCAACGAAAAATA
ACTAAGCTTAGAATCGAACACTGTTCTGTGTACACGAATTGTTCCGCTTG
CTTAGAGTCTCGGGATCCTTTTTGTGGATGGTGTTCCTTGGAGAAGCGGT
GCACTGTACGATCAACATGCCAGCGAGATACATCTGCGTCGAGATGGCTT
TCATTAGGTAGTGGACAGCAATGCATAGAATTTGAATCTATTATCCCAGA
GAAAATACCAATTTCTGAATTATCGCACCTGCATTTAATAATTCGAACTT
TGCCCGAACCTTTTAATGCAAAATACCGATGTGTTTTTGGAAATTCCACC
CCCATTGATGCCGAAATTCTGGAAAACGGACTCGGATGTGCTACTCCCCC
ATTAGATGAAAGACCATTAATACCAACAAACACTGATCATATTTTGGTGC
CATTGTCAGTAAGAAGTTCGGAGACAAATAAGGATTTTGTATCAAGGAAT
TTTGCTTTTTTTGACTGCTCACATCATGGAAATTGCCAGGAGTGTCTACA
AAGTTCCTGGGGTTGCAACTGGTGTATTTTTGATAATAAGTGCGTTCACA
AGTCTTTGCAATGCCGTAACATAGAAAATGCTGTAAGTACTGTTGGTCAC
TGCCCCCACTTAAAAAAAAATCGTCCGGAAATACTTCTACCCGTAAGAGT
GCCAATAGAAATTCGGCTAGAGATTGAAAATTTACCAAAACCCAAGAGCG
CACATGCTGGTTTTTTATGTACAATACATATTGAAGCTGCTCAGATGCTA
CTCCCTGCTCACGTTGAGTCAAATAAAATTGTAGTTTGCGAAAAAACACC
ATATTTCTACGAGATTAATACACATGAATATCAGGCGAAGGTTGTAGTTA
CATGGAACTTCCAGCATTATGTGGACACCGCAATTGTTACATTATACAAG
TGTGACGTGTTGGGCTCCCATCGGGAACACCCTGATTGCAGTTTGTGCGT
AACTCGAGATCCAAAATATAAATGTGCTTGGTGCAGCAACTCATGTGTAT
ATAATGAAACTTGCATAGCTGATAAAAATTCTATCAGCTCAGGATCTAAA
TCCGCTATAGAAAACGAGTGCCCATTACCACGGATTGATATTATTAAACC
ATTATCTGGGCCAGTCGAGGGTGGAACTCTTATTACAATTGAAGGAAGTA
ATTTGGGCATAAGGGAGGAAGATGTTCGTGGCAAAATATTTATTGGTTCT
GTGCCTTGTGAACTAGAAAATTATCAAATATCGGTAAAAATTGAATGCCG
GACTGGAGCATCACTGTACGAAATGTCTGCACCCATAAAAGTTGCAAATG
ATGCAGGGTTTACTGAATCAAGTGTTCAGTTTCATTTTAAGAATGTGCTG
TTAACAGGTTTATATCCCACAATTGGCCCTAGGTCGGGAGGGACACAATT
GTCTTTAATTGGGAAGTTTTTGAACATTGGCTCAACTATGCGAGCATTTT
TAGATGAGTATGAGTGTCATATAGATGTTACACAAGCTTCATCATCCCAA
GTTAGTTGTACTACATCAGAAGCGACCCAACCTGAACCAATACGGTCCCT
TCATCTAGTTATTGATGGTGCGAACAGAACGCTAGAATGCCAGATCTCAA
CCCCAAGCATTACCAATACAAATCCGACTCGAAGTAATTTTGGTTCTTAT
CAACTCCGTTCGCTACCACGGCAACCCTGCTCTATTTTTAACTATACACA
GGACCCGCGTATAATGCAAATTAAGCCATTGCGTAGTTTTAAAAGTGGTG
GTCGAGTCCTCACCGTTCATGGAATATATCTTAATTCCATCCAAAAACCT
GAACTAGAAGTGTTTTATGACAATGAAAGAGTAAATAAAACATCTTGTGT
GGTGATCAACTCTAATCAAATGGAATGTCCATCTCCTCCTGTAAATTACA
AATTTGAGACTTTTAAAAAGACGAACAGAAAGATGGATACTGAATTGCAC
TTACAAAATTCTTCGTTTCAAACTGAAACCAGGTATAAAAATGAATATGA
TAGAAAAAAGCGGCGAGCCGACTTTGGAGACACTTTTCGCTTATACACAA
ATGCAGGATCTTCAGCCAACTATTTTGTTAACAATAATATGGACGTCACC
ACATTCGTTAAGGTTCATGAAACTCAATTAAACTTACAACTAAGTTTTGT
AATGGACAATGTACAACTAGTTCGAAACTTGAATAAATATTTTCATGACA
TAAGGAGCACTATTGTCTATTTAGCAGACCCAAAATATTTGCCATTTCCC
AACGACGGCGTTAAACTCTACAAGGGTGACAGCTTGGTCATAGAAGGCGA
GCTATTAAACTTGGCAGCTGATGAGTACGATGTAAATGTAACTATTGGAA
CTTCCCAATGCAATATTACCAGCCTGGCACTTAACCAACTTTTATGCATT
CCGCCGGAGCAACAACCACTTCCAACTGATGAAAATGGTGTGGATCAATC
AACTGATTTACCTCTTGTTGTCGTTAAAGTAGGTCGAAATCTTCGTTTTG
TAATAGGATATCTTAAGTATGATTTAAATAAACCCTATGTTTTCTCACAT
GCCTTGTTAGTCGGCATATTAACGGTAGCACTTCTGGTCGTTGTTTTTGT
AATTGTACTTATAATATTCAGAAGGAAATCAACACAAGCAGAACGCGAGT
ATAAACGTATTCAGATACAGATGATTACATTAGAAAGCAACGTACGTTCT
GAGTGTAAACAGGCATTCGCTGAGCTCCAAACGGACATGACCGACCTAAC
AGCAGATTTGGAGAGCACAGGCATACCAACTTTAGATCACGTCAACTATA
TTATGAAGGTGTTTTTCCCTGGTGTATCAGATCATCCTATTTTAAATTCT
CCAAAATTTCGTGAAGGTAGCCCACAGACTAACTATGACGCAGCTATGGT
ACAATTTGAACAACTGATTGGCAATAAATATTTTTTATTAATGTTCATAG
AAACATTAGAAGCTCAACGTTCATCATTTTCTATTAGAGACCGAGTTAAC
GTTGCCTCATTAATAATGGTTGTTTTAATGAACAAGATGGAATATGCCAC
GGAAATTTTGAAGTCCCTTTTATTACGTTTGATAGATAAATCACTTGCCA
GCAAACATCCTCAGCTGATGCTAAGGCGTACTGAAAGCGTTGTTGAAAAA
ATGTTGACCAACTACCTAGCAATTTGTATGTACGATTACCTGAAAGAGTA
CGCCGGATCAAATTTATTTTTGCTCTTCAAAGCAATAAAGCATCAAATTG
AAAAGGGTTTAGTGGACGCAATAACCAACGATGCCCGTTACTCCCTTTCA
GAAGAACGTCTTCTGCATGAACAAGTTACCCATTCTGTTGTAATATTGCA
TATTTTACAAGATGATCTTGATGAAAAAGTCCAATGTCGCGTTAACGATT
GGGATACCATTTCTCAAGTTAAGCTTAAAATCCTCGACGCAATTTTTAAA
AACACTCCTTTCTCTATGAGGCCATCTGTAAACGAAGTAGACTTAGAATG
GAGGCACGGCCGAGGAGGTCATCTTACATTACAAGATGAAGACTTGACAA
CCAAAACCGTTAACGGATGGAAGCGCCTTAACACATTAGCTCATTATGGA
GTCAAAGAATCTGCAGTAATGTCACTAATTGCACGTCAAAATGATAATTA
TCATATACCATACAGTAAAAACCAAAATTCGGCACCATACCACAATTTTT
ATTTTATAAACAATTCGCAAAGTCATATTATAATTAATAATGATATCGAA
TCAGGTTTGCAGCAGCCCCGGGTTTACCATCTTGTTAAGCCCAATATACC
TGATCATTATATGAACATTAAAAATTCCGTGTTATCCGGAGGATCACCAG
CATTTCAATCGCATGTCGTTAATAATTGTAATGACAGGGTGAACAAAACA
ATACCAGAAGTTTACCTTACACGTCTTCTGGCCACAAAAGGAACTATACA
AAAATTTGTTGATGATTTTTTCTCAATTATTTTAACTGTTAATGAGGAGT
TGCCACCTGCCGTTAAATGGCTCTTTGACTTACTTGATGAAGCTGCGCGA
CGCCATGATATTGCTGATACTGATATTGTGCACGCTTGGAAGTCAAATTG
TTTGCCCCTTCGATTCTGGGTTAATTTTATAAAAAATCCGGATTTTATAT
TTGATGTAAATAAAACATACAGCGTTGATTCCTGTTTAAGTGTCATTGCA
CAAACATTTATGGACGCTTGTTCAACATCAGAGCACAGACTTGGAAAAGA
TTCGCCGTCGAATAAGTTGCTGTTTGCTAAGGATATTCCAAACTATAGAA
TTATGGTCAAAGAGTTTTACCGCGATGTATCAAGGCTTCCACAAATAAGC
GACCAGGAAATGAGTACAGCTATGCAACAGCTATCAGTAAGGCAAAACGA
AGAGTTTGATACTATTTCTGCATTAAAAGAGTTATACATTTATATAACTA
AATATAAGGATCAGATTATGGAATCACTTGAAACTGATATTAATTGCCGA
AAGATGCATCTTTCACGAAAATTAGGAAATGTTGCTGCTACACTAGATGG
TGATTGCACATCTAATTGCTGAAAGCTTTCTAGACCAT
BS16629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexB-RB | 6156 | CG17245-PB | 1..6156 | 17..6172 | 30780 | 100 | Plus |
| PlexB-RA | 6156 | CG17245-PA | 1..6156 | 17..6172 | 30780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexB-RB | 7050 | CG17245-RB | 355..6510 | 17..6172 | 30780 | 100 | Plus |
| PlexB-RA | 6716 | CG17245-RA | 355..6510 | 17..6172 | 30780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:14:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 36516..41287 | 5297..526 | 23860 | 100 | Minus |
| 4 | 1348131 | 4 | 8340..11754 | 5297..1867 | 16715 | 99.2 | Minus |
| 4 | 1348131 | 4 | 21612..25026 | 5297..1867 | 16625 | 99 | Minus |
| 4 | 1348131 | 4 | 29549..31455 | 5297..3391 | 9475 | 99.8 | Minus |
| 4 | 1348131 | 4 | 20969..21553 | 5882..5298 | 2925 | 100 | Minus |
| 4 | 1348131 | 4 | 35873..36457 | 5882..5298 | 2925 | 100 | Minus |
| 4 | 1348131 | 4 | 28906..29490 | 5882..5298 | 2895 | 99.7 | Minus |
| 4 | 1348131 | 4 | 42913..43424 | 528..17 | 2560 | 100 | Minus |
| 4 | 1348131 | 4 | 7992..8281 | 5587..5298 | 1450 | 100 | Minus |
| 4 | 1348131 | 4 | 7744..7994 | 5882..5632 | 1255 | 100 | Minus |
| 4 | 1348131 | 4 | 13323..13507 | 6064..5880 | 925 | 100 | Minus |
| 4 | 1348131 | 4 | 33191..33375 | 6064..5880 | 925 | 100 | Minus |
| 4 | 1348131 | 4 | 6541..6725 | 6064..5880 | 925 | 100 | Minus |
| 4 | 1348131 | 4 | 27703..27887 | 6064..5880 | 910 | 99.5 | Minus |
| 4 | 1348131 | 4 | 31458..31622 | 2031..1867 | 795 | 98.8 | Minus |
| 4 | 1348131 | 4 | 27530..27639 | 6172..6063 | 550 | 100 | Minus |
| 4 | 1348131 | 4 | 13150..13259 | 6172..6063 | 550 | 100 | Minus |
| 4 | 1348131 | 4 | 33018..33127 | 6172..6063 | 550 | 100 | Minus |
| 4 | 1348131 | 4 | 6368..6477 | 6172..6063 | 535 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:14:55 has no hits.
BS16629.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:52:00 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexB-RA | 359..6508 | 22..6171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:14:42 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexB-RA | 360..6509 | 22..6171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:37 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| plexB-RA | 359..6508 | 22..6171 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:25:07 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PlexB-RA | 360..6509 | 22..6171 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:25:07 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 33019..33125 | 6065..6171 | 100 | <- | Minus |
| 4 | 33191..33373 | 5882..6064 | 100 | <- | Minus |
| 4 | 35874..36457 | 5298..5881 | 100 | <- | Minus |
| 4 | 36516..41285 | 528..5297 | 100 | <- | Minus |
| 4 | 42914..43419 | 22..527 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:14:42 Download gff for
BS16629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 53645..53751 | 6065..6171 | 100 | <- | Minus |
| arm_4 | 53817..53999 | 5882..6064 | 100 | <- | Minus |
| arm_4 | 56500..57083 | 5298..5881 | 100 | <- | Minus |
| arm_4 | 57142..61911 | 528..5297 | 100 | <- | Minus |
| arm_4 | 63540..64045 | 22..527 | 100 | | Minus |
BS16629.pep Sequence
Translation from 16 to 6171
> BS16629.pep
MLRKELYCANIIHVLHVLCIIIILGSQHYCVNCIEELPAQALSPLNDIVA
QFNLPSIPVQSTASSYGNRSIGNNIESVRDSQSKNYFTHMSFDFMHNVLF
AGATNKILKLNENLRVLAEAVTGPLHDSPQCHAGGCPEDIETSLVNNFNK
ILVVSYAHDGILIACGSIRQGACEIYSLPRFPATPQFFAVPLAANDENAS
TYAFVGPARYAWKEEDILYVGTTFTNVGDYRHDVPAISSRRLDDLNYAEF
SIQQSIINIDVKYRDHFLVDYIYGFNSSEYAYFIIVQKKSHLADEAGYVT
RLARICITDPNYDSYTEITVQCTATENNVDYNIVRDAKVTPASHKLAQKM
GIKKDDHVLVTVFSPSREISNQPESKSAMCIYSIKDIEDMFIENIHLCFN
GTTKDRNLGYISGTINDGRCPIVGSLGNIYNFCSVGLKISGVSPITAHAL
FHFDNVSVTSVTATSTTDQQHSLAFLGTNMGVIKKVLLSGQSPGEYEEIV
VDAGNRILPNTMMSPKKDFLYVLSQRKITKLRIEHCSVYTNCSACLESRD
PFCGWCSLEKRCTVRSTCQRDTSASRWLSLGSGQQCIEFESIIPEKIPIS
ELSHLHLIIRTLPEPFNAKYRCVFGNSTPIDAEILENGLGCATPPLDERP
LIPTNTDHILVPLSVRSSETNKDFVSRNFAFFDCSHHGNCQECLQSSWGC
NWCIFDNKCVHKSLQCRNIENAVSTVGHCPHLKKNRPEILLPVRVPIEIR
LEIENLPKPKSAHAGFLCTIHIEAAQMLLPAHVESNKIVVCEKTPYFYEI
NTHEYQAKVVVTWNFQHYVDTAIVTLYKCDVLGSHREHPDCSLCVTRDPK
YKCAWCSNSCVYNETCIADKNSISSGSKSAIENECPLPRIDIIKPLSGPV
EGGTLITIEGSNLGIREEDVRGKIFIGSVPCELENYQISVKIECRTGASL
YEMSAPIKVANDAGFTESSVQFHFKNVLLTGLYPTIGPRSGGTQLSLIGK
FLNIGSTMRAFLDEYECHIDVTQASSSQVSCTTSEATQPEPIRSLHLVID
GANRTLECQISTPSITNTNPTRSNFGSYQLRSLPRQPCSIFNYTQDPRIM
QIKPLRSFKSGGRVLTVHGIYLNSIQKPELEVFYDNERVNKTSCVVINSN
QMECPSPPVNYKFETFKKTNRKMDTELHLQNSSFQTETRYKNEYDRKKRR
ADFGDTFRLYTNAGSSANYFVNNNMDVTTFVKVHETQLNLQLSFVMDNVQ
LVRNLNKYFHDIRSTIVYLADPKYLPFPNDGVKLYKGDSLVIEGELLNLA
ADEYDVNVTIGTSQCNITSLALNQLLCIPPEQQPLPTDENGVDQSTDLPL
VVVKVGRNLRFVIGYLKYDLNKPYVFSHALLVGILTVALLVVVFVIVLII
FRRKSTQAEREYKRIQIQMITLESNVRSECKQAFAELQTDMTDLTADLES
TGIPTLDHVNYIMKVFFPGVSDHPILNSPKFREGSPQTNYDAAMVQFEQL
IGNKYFLLMFIETLEAQRSSFSIRDRVNVASLIMVVLMNKMEYATEILKS
LLLRLIDKSLASKHPQLMLRRTESVVEKMLTNYLAICMYDYLKEYAGSNL
FLLFKAIKHQIEKGLVDAITNDARYSLSEERLLHEQVTHSVVILHILQDD
LDEKVQCRVNDWDTISQVKLKILDAIFKNTPFSMRPSVNEVDLEWRHGRG
GHLTLQDEDLTTKTVNGWKRLNTLAHYGVKESAVMSLIARQNDNYHIPYS
KNQNSAPYHNFYFINNSQSHIIINNDIESGLQQPRVYHLVKPNIPDHYMN
IKNSVLSGGSPAFQSHVVNNCNDRVNKTIPEVYLTRLLATKGTIQKFVDD
FFSIILTVNEELPPAVKWLFDLLDEAARRHDIADTDIVHAWKSNCLPLRF
WVNFIKNPDFIFDVNKTYSVDSCLSVIAQTFMDACSTSEHRLGKDSPSNK
LLFAKDIPNYRIMVKEFYRDVSRLPQISDQEMSTAMQQLSVRQNEEFDTI
SALKELYIYITKYKDQIMESLETDINCRKMHLSRKLGNVAATLDGDCTSN
C*
BS16629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PlexB-PB | 2051 | CG17245-PB | 1..2051 | 1..2051 | 10767 | 100 | Plus |
| PlexB-PA | 2051 | CG17245-PA | 1..2051 | 1..2051 | 10767 | 100 | Plus |
| PlexA-PA | 1945 | CG11081-PA | 4..1938 | 14..2039 | 2855 | 35.2 | Plus |
| PlexA-PF | 1928 | CG11081-PF | 4..1921 | 14..2039 | 2852 | 35.3 | Plus |
| PlexA-PC | 1505 | CG11081-PC | 3..1498 | 455..2039 | 2323 | 36.1 | Plus |
