Clone BS16630 Report

Search the DGRC for BS16630

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:30
Vector:pDNR-Dual
Associated Gene/Transcriptmus301-RA
Protein status:BS16630.pep: full length peptide match
Sequenced Size:3188

Clone Sequence Records

BS16630.complete Sequence

3188 bp assembled on 2009-12-07

GenBank Submission: KX800776

> BS16630.complete
GAAGTTATCAGTCGACATGGCAAATAAGCATAATTTGTGCAAAAAAAGAA
GTTTGGATTTGAGCGAGGAATCAACAAGCGAAAGCCATGCCAAGCGTCAG
TGCACCGAAAACCTCTTTTGGCCGGAGGGCGAAGACGACGACAGCTTCTT
TTCCAACGCGCATCTGGAGGATTTGCTGGACGGACGAAAGGAGGAGCTCT
TTGGCACGCAAGCAACCACAAGTACCAACAAGATGACGCAAAGTGGGTCG
GATGATGGACTGGGACTCTTTGCGGACACATCCTTTCCAAGTGCACAGAG
TGTTCCACCCAACAGTGCCTCTAAACCGGATGAAGCCAGTGCACCAACTG
ATAAACATCAAATCGACCTGGCGGACGAGGAAAACGCCGACAAGCTGTTT
AAGAAAATCAACCTCAACGATCTGAGCATTGCCGAAATGGAGGATATTTT
CCATGGCGCCGATGATTTTAGTGATCCCATGGTTCAAAACACACAACTCT
TCTTGGACGCAATGACCTTTAAGAAGCCCAAAACACCAGAGAAGCTACTG
GCCCCCCTTAAAGACGATTCCATGTCTTTCATTTCCAAATCTGTGATTGA
GGGCCTAGTGCAGGGCACTCAGTATGTGACCTGCGAAGAGCTGAAGAACC
AATCCCTCCTAGATCCAGTCAATTGGGAGACTCAGGCTTTTGCGGACTTC
GAGAAGAATAACCAAGATATAGACAAGTTTCCCAGCAAGGGCGAATTCTA
TGGCCTGCCGGATAAGGTCAAAAAGATGATTCTGGAACACAAAGGCATTA
ATAGTCTTTATGAATGGCAGGACGAGTGCCTAAATCTACCTGCCATCAGG
CAGCGCAAAAATCTGATCTACGCTCTGCCCACAAGTGGTGGAAAAACTCT
AGTAGCCGAAATCCTTATGCTGCGTGAATTACTTTGCCGCGAACGCAATG
TGCTGTTCATCCTGCCATATGTGTCGATTGTCCAGGAGAAGGTGAGCGCC
ATGTCTCCATTTGCAATCGACCTGGATTTCATTGTGGAGGAATACACGGC
CGGCAAGGGCAAGTGTCCGCCTCAGCCGCGTCGCAAAAGACGTAGTCTCT
TCATTGCCTCCATCGAAAAGGGAGCTGTTCTAATGGACAGCCTGATAGAC
GTACAACGTCCTCATGAGATAGGTCTGGTGGTGGTGGATGAACTGCATTT
GATAGGCGAAAAGGGTAGAGGGGCCACCTTGGAGGCTTTCCTTACCAAAG
TGATGTTTCTAAATGCCAATATTCAAATTGTTGGCATGAGTGCCACAATA
GGAAATCTCAGCGAAATATCCTCTTTTTTGAATGCTGATGTATACACCAG
GGGCTTTCGCCCAGTTGAGCTAAAGGAGTACATCAAATGTGGCCCCGATT
TGTTGGAAATAAATTCGGCTGGTCAAACGCTGGAGGAGATATTCGTCCCC
AGTCGCAGTGTAGAGTACAATTACAGTGAAGCCGTCAAACGCGCCGATCC
CGACCATCTGGCTGGTTTGATAAGCGAATGTGCTCCGGAACACTGCTGCT
TGGTTTTCTGTCCTAGCCGCAAAAACTGTGAGAACGTGGCGCTACTTCTC
AGTCGCATTGTGCCAAAGCATAAATTTTTTGAGCATCGGCGTAGCGAGAA
GTTGGATCTAATGGATGCCCTGGACAAGATGTGCGGCATACTCAGCCCGG
TGTTGGCGAAAACCCTACCCTACGGGATTGCCTATCATCATTCGGGCTTG
ACAACCGATGAGAGGAAGTACATTGAGACTGCGTATAGATTTGGAGTCGT
CACAGTCATTTGTTGCACCTCCACTTTGGCTGCAGGGGTCAACCTACCAG
CCAAGCGGGTAATCATACGTGCTCCTTATGTGGGTCAAGAATTTCTGACT
TTGTGCAAGTATAAGCAAATGGTGGGACGGGCAGGTCGCGCCGGATTGGG
TGAAGCTGGCGAGAGTATCCTGATAGCCCAGAGCAAAGACAATCTGCTGG
TCGGACAAATGCTTTTCTCGCCTATGGATAAGGCTTTAAGTTCCTTGGAT
CAAAATGAGGCAGTTGGACTGCAATCGCTTATTCTCAGCGTGGTTGGCTT
GAATTTAGCAGAATGTCGTAGAGACTTGAATCGGCTGGTAAACAGCACAC
TGTTGTCTGTGCAGGCCAAATCCCTGGAGGTGGCCGTGAACGAGATCGTG
CTCCGTATTCTCCGAGAGATGTTCAAAAATAAAGTGCTGCAGCTTGCCGA
ACCGCAGGCGAAATCTAAGATCAATTCTTCGGATATTATAACATCGCAGG
ATGTTAGTCAGGCAAATAGGCCCGCTGGCGATCGACGTTTGCTCATTGGA
CAGTCGACGCCATTTAAGCTGACCAATATTGGAAGAGCTGCCTTCAAGGC
GGGCATCGACTACAAGCGTGCAAATGCCATTCACAAGGAGCTCAAGCAGG
CCCAGCAGCAGCTCATTCTGACCAACTACTTGCACCTACTGTACCTTGTC
GTGTGCTTTAACTCGAACGAAAGAGGAGACGAGTTGTTTCCGGCAGATGC
CAGCATTCTGTTTGGAGTTTACACCTCGCTTCCACTGGACTCGCAGGCAA
TGTTCAAACAACTTGGATTTACAGAGGCCCATGCAGCTAGGCTATTTAAG
ACGCAGTCGGTGCAAGGTCCATTGTCCCTGCAGCTGAATCGCCTCTACAA
GGTGCTTATTCTGGCGGATATACTTAACCTCCTACCGATTCCCTCCGTGG
CCAGCAAGTACAACGTGGAGCGGGGAACTCTGCAGCATCTGATCAGTCAA
TCCACAGCAGCGGCGAGTGCCATTGTTCGCCTGTGCGAGGAGCTGGAAGA
GTTTTGGTGCTATAAACCATTGTTTGAGCGGATCTTGCACAAAATGGATC
GATGCGGCACATTTGAGCTGGAGCCGCTAATGGAACTGCCAGCGGTTAAG
ATCAATCGTGCCAGGCAGTTGTATGCTGCGGGTTTTCAAACCATTGGGGA
TATAGCCAGAGTGAGGCCGTCGCACTTAGTCCAATCCTTAGAGCACATGC
CGCTTAGAGTGGCCACGGAAATTGTCTCGGCAGCAAAGATAATTTTAATG
AAAAAGCTCGACCACCTGGAAGAGGAAACGGAGAACCTGAAGGACTGTTT
AAAAACGTCTGATAAAAATTAGAAGCTTTCTAGACCAT

BS16630.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:51
Subject Length Description Subject Range Query Range Score Percent Strand
mus301-RA 3156 CG7972-PA 1..3156 17..3172 15765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
mus301-RA 3364 CG7972-RA 30..3185 17..3172 15765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8140605..8141483 2075..2953 4395 100 Plus
3L 28110227 3L 8137837..8138632 17..812 3980 100 Plus
3L 28110227 3L 8139483..8140085 1472..2074 3000 99.8 Plus
3L 28110227 3L 8138691..8139144 812..1265 2270 100 Plus
3L 28110227 3L 8139201..8139407 1265..1471 1035 100 Plus
3L 28110227 3L 8141556..8141690 2954..3088 675 100 Plus
3L 28110227 3L 8141750..8141835 3087..3172 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:10:50 has no hits.

BS16630.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:33 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 24..3179 17..3172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:54 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 30..3185 17..3172 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:22 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 24..3179 17..3172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:36 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 30..3185 17..3172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:36 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8137837..8138632 17..812 100 -> Plus
3L 8138692..8139144 813..1265 100 -> Plus
3L 8139202..8139407 1266..1471 100 -> Plus
3L 8139483..8140085 1472..2074 99 -> Plus
3L 8140605..8141483 2075..2953 100 -> Plus
3L 8141556..8141690 2954..3088 100 -> Plus
3L 8141752..8141835 3089..3172 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:54 Download gff for BS16630.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8130937..8131732 17..812 100 -> Plus
arm_3L 8131792..8132244 813..1265 100 -> Plus
arm_3L 8132302..8132507 1266..1471 100 -> Plus
arm_3L 8132583..8133185 1472..2074 99 -> Plus
arm_3L 8133705..8134583 2075..2953 100 -> Plus
arm_3L 8134656..8134790 2954..3088 100 -> Plus
arm_3L 8134852..8134935 3089..3172 100   Plus

BS16630.3prime Sequence

904 bp (831 high quality bases) assembled on 2007-05-15

> BS16630.3prime
ATGGTCTAGAAAGCTTCTAATTTTTATCAGACGTTTTTAAACAGTCCTTC
AGGTTCTCCGTTTCCTCTTCCAGGTGGTCGAGCTTTTTCATTAAAATTAT
CTTTGCTGCCGAGACAATTTCCGTGGCCACTCTAAGCGGCATGTGCTCTA
AGGATTGGACTAAGTGCGACGGCCTCACTCTGGCTATATCCCCAATGGTT
TGAAAACCCGCAGCATACAACTGCCTGGCACGATTGATCTTAACCGCTGG
CAGTTCCATTAGCGGCTCCAGCTCAAATGTGCCGCATCGATCCATTTTGT
GCAAGATCCGCTCAAACAATGGTTTATAGCACCAAAACTCTTCCAGCTCC
TCGCACAGGCGAACAATGGCACTCGCCGCTGCTGTGGATTGACTGATCAG
ATGCTGCAGAGTTCCCCGCTCCACGTTGTACTTGCTGGCCACGGAGGGAA
TCGGTAGGAGGTTAAGTATATCCGCCAGAATAAGCACCTTGTAGAGGCGA
TTCAGCTGCAGGGACAATGGACCTTGCACCGACTGCGTCTTAAATAGCCT
AGCTGCATGGGCCTCTGTAAATCCAAGTTGTTTGAACATTGCCTGCGAGT
CCAGTGGAAGCGAGGTGTAAACTCCAAACAGAATGCTGGCATCTGCCGGA
AACAACTCGTCTCCTCTTTCGTTCGAGTTAAAGCACACGACAAGGTACAG
TAGGTGCAAGTAGTTGGTCAGAATGAGCTGCTGCTGGGCCTGCTTGAGCT
CCTTGTGAATGGCATTTGCACGCTTGTAGTCGATGCCCGCCTTGAAGGCA
GCTCTTCCAATATTGGTCAGCTTAAATGGCGTCGACTGTCCAATGAGCAA
ACGTCGATCGCCAGCGGGCCTATTTGCCTGACTAACATCCTGCGATGTTA
TATA

BS16630.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG7972-PA 3156 mus301-RA 2271..3156 902..17 4430 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
mus301-RA 3364 CG7972-RA 2300..3185 902..17 4430 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8140817..8141483 902..236 3335 100 Minus
3L 28110227 3L 8141556..8141690 235..101 675 100 Minus
3L 28110227 3L 8141750..8141835 102..17 430 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:17:39 has no hits.

BS16630.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:17 Download gff for BS16630.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7972-PA 2269..3156 17..903 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:49 Download gff for BS16630.3prime
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 2298..3188 14..903 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:27 Download gff for BS16630.3prime
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 2298..3188 14..903 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:27 Download gff for BS16630.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8140815..8141483 236..903 99 -> Minus
3L 8141556..8141690 101..235 100 -> Minus
3L 8141752..8141838 14..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:49 Download gff for BS16630.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8133915..8134583 236..903 99 -> Minus
arm_3L 8134656..8134790 101..235 100 -> Minus
arm_3L 8134852..8134938 14..100 98   Minus

BS16630.5prime Sequence

913 bp (771 high quality bases) assembled on 2007-05-15

> BS16630.5prime
GAAGTTATCAGTCGACATGGCAAATAAGCATAATTTGTGCAAAAAAAGAA
GTTTGGATTTGAGCGAGGAATCAACAAGCGAAAGCCATGCCAAGCGTCAG
TGCACCGAAAACCTCTTTTGGCCGGAGGGCGAAGACGACGACAGCTTCTT
TTCCAACGCGCATCTGGAGGATTTGCTGGACGGACGAAAGGAGGAGCTCT
TTGGCACGCAAGCAACCACAAGTACCAACAAGATGACGCAAAGTGGGTCG
GATGATGGACTGGGACTCTTTGCGGACACATCCTTTCCAAGTGCACAGAG
TGTTCCACCCAACAGTGCCTCTAAACCGGATGAAGCCAGTGCACCAACTG
ATAAACATCAAATCGACCTGGCGGACGAGGAAAACGCCGACAAGCTGTTT
AAGAAAATCAACCTCAACGATCTGAGCATTGCCGAAATGGAGGATATTTT
CCATGGCGCCGATGATTTTAGTGATCCCATGGTTCAAAACACACAACTCT
TCTTGGACGCAATGACCTTTAAGAAGCCCAAAACACCAGAGAAGCTACTG
GCCCCCCTTAAAGACGATTCCATGTCTTTCATTTCCAAATCTGTGATTGA
GGGCCTAGTGCAGGGCACTCAGTATGTGACCTGCGAAGAGCTGAAGAACC
AATCCCTCCTAGATCCAGTCAATTGGGAGACTCAGGCTTTTGCGGACTTC
GAGAAGAATAACCAAGATATAGACAAGTTTCCCAGCAAGGGCGAATTCTA
TGGCCTGCCGGATAAGGTCAAAAAGATGATTCTGGAACACAAAGGCATTA
ATAGTCTTTATGAATGGCAAGACGAGTGCCTAAATCTACCTGCCATCATG
CAGCGCAGAAATCTGATCTACGCTCTGCCCACAAGTGGTGGAATAACTCT
AGTAGCCGAAATC

BS16630.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7972-PA 3156 mus301-RA 1..897 17..913 4385 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
mus301-RA 3364 CG7972-RA 30..926 17..913 4425 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8137837..8138632 17..812 3980 100 Plus
3L 28110227 3L 8138691..8138792 812..913 450 96.1 Plus
Blast to na_te.dros performed on 2015-02-13 13:18:52 has no hits.

BS16630.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:29 Download gff for BS16630.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7972-PA 1..897 17..913 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:00 Download gff for BS16630.5prime
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 30..926 17..913 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:55 Download gff for BS16630.5prime
Subject Subject Range Query Range Percent Splice Strand
mus301-RA 30..926 17..913 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:55 Download gff for BS16630.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8138692..8138792 813..913 96   Plus
3L 8137837..8138632 17..812 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:00 Download gff for BS16630.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8130937..8131732 17..812 100 -> Plus
arm_3L 8131792..8131892 813..913 96   Plus

BS16630.pep Sequence

Translation from 16 to 3171

> BS16630.pep
MANKHNLCKKRSLDLSEESTSESHAKRQCTENLFWPEGEDDDSFFSNAHL
EDLLDGRKEELFGTQATTSTNKMTQSGSDDGLGLFADTSFPSAQSVPPNS
ASKPDEASAPTDKHQIDLADEENADKLFKKINLNDLSIAEMEDIFHGADD
FSDPMVQNTQLFLDAMTFKKPKTPEKLLAPLKDDSMSFISKSVIEGLVQG
TQYVTCEELKNQSLLDPVNWETQAFADFEKNNQDIDKFPSKGEFYGLPDK
VKKMILEHKGINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEIL
MLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDFIVEEYTAGKGKC
PPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGEKG
RGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNADVYTRGFRPV
ELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAG
LISECAPEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMD
ALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICC
TSTLAAGVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGES
ILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAEC
RRDLNRLVNSTLLSVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKS
KINSSDIITSQDVSQANRPAGDRRLLIGQSTPFKLTNIGRAAFKAGIDYK
RANAIHKELKQAQQQLILTNYLHLLYLVVCFNSNERGDELFPADASILFG
VYTSLPLDSQAMFKQLGFTEAHAARLFKTQSVQGPLSLQLNRLYKVLILA
DILNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYK
PLFERILHKMDRCGTFELEPLMELPAVKINRARQLYAAGFQTIGDIARVR
PSHLVQSLEHMPLRVATEIVSAAKIILMKKLDHLEEETENLKDCLKTSDK
N*

BS16630.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
mus301-PA 1051 CG7972-PA 1..1051 1..1051 5358 100 Plus
mus308-PA 2059 CG6019-PA 66..956 99..1008 820 28.5 Plus
l(2)35Df-PA 1055 CG4152-PA 163..565 277..664 277 25.7 Plus
l(3)72Ab-PA 2142 CG5931-PA 1344..1721 281..670 171 23.8 Plus