Clone Sequence Records
BS16630.complete Sequence
3188 bp assembled on 2009-12-07
GenBank Submission: KX800776
> BS16630.complete
GAAGTTATCAGTCGACATGGCAAATAAGCATAATTTGTGCAAAAAAAGAA
GTTTGGATTTGAGCGAGGAATCAACAAGCGAAAGCCATGCCAAGCGTCAG
TGCACCGAAAACCTCTTTTGGCCGGAGGGCGAAGACGACGACAGCTTCTT
TTCCAACGCGCATCTGGAGGATTTGCTGGACGGACGAAAGGAGGAGCTCT
TTGGCACGCAAGCAACCACAAGTACCAACAAGATGACGCAAAGTGGGTCG
GATGATGGACTGGGACTCTTTGCGGACACATCCTTTCCAAGTGCACAGAG
TGTTCCACCCAACAGTGCCTCTAAACCGGATGAAGCCAGTGCACCAACTG
ATAAACATCAAATCGACCTGGCGGACGAGGAAAACGCCGACAAGCTGTTT
AAGAAAATCAACCTCAACGATCTGAGCATTGCCGAAATGGAGGATATTTT
CCATGGCGCCGATGATTTTAGTGATCCCATGGTTCAAAACACACAACTCT
TCTTGGACGCAATGACCTTTAAGAAGCCCAAAACACCAGAGAAGCTACTG
GCCCCCCTTAAAGACGATTCCATGTCTTTCATTTCCAAATCTGTGATTGA
GGGCCTAGTGCAGGGCACTCAGTATGTGACCTGCGAAGAGCTGAAGAACC
AATCCCTCCTAGATCCAGTCAATTGGGAGACTCAGGCTTTTGCGGACTTC
GAGAAGAATAACCAAGATATAGACAAGTTTCCCAGCAAGGGCGAATTCTA
TGGCCTGCCGGATAAGGTCAAAAAGATGATTCTGGAACACAAAGGCATTA
ATAGTCTTTATGAATGGCAGGACGAGTGCCTAAATCTACCTGCCATCAGG
CAGCGCAAAAATCTGATCTACGCTCTGCCCACAAGTGGTGGAAAAACTCT
AGTAGCCGAAATCCTTATGCTGCGTGAATTACTTTGCCGCGAACGCAATG
TGCTGTTCATCCTGCCATATGTGTCGATTGTCCAGGAGAAGGTGAGCGCC
ATGTCTCCATTTGCAATCGACCTGGATTTCATTGTGGAGGAATACACGGC
CGGCAAGGGCAAGTGTCCGCCTCAGCCGCGTCGCAAAAGACGTAGTCTCT
TCATTGCCTCCATCGAAAAGGGAGCTGTTCTAATGGACAGCCTGATAGAC
GTACAACGTCCTCATGAGATAGGTCTGGTGGTGGTGGATGAACTGCATTT
GATAGGCGAAAAGGGTAGAGGGGCCACCTTGGAGGCTTTCCTTACCAAAG
TGATGTTTCTAAATGCCAATATTCAAATTGTTGGCATGAGTGCCACAATA
GGAAATCTCAGCGAAATATCCTCTTTTTTGAATGCTGATGTATACACCAG
GGGCTTTCGCCCAGTTGAGCTAAAGGAGTACATCAAATGTGGCCCCGATT
TGTTGGAAATAAATTCGGCTGGTCAAACGCTGGAGGAGATATTCGTCCCC
AGTCGCAGTGTAGAGTACAATTACAGTGAAGCCGTCAAACGCGCCGATCC
CGACCATCTGGCTGGTTTGATAAGCGAATGTGCTCCGGAACACTGCTGCT
TGGTTTTCTGTCCTAGCCGCAAAAACTGTGAGAACGTGGCGCTACTTCTC
AGTCGCATTGTGCCAAAGCATAAATTTTTTGAGCATCGGCGTAGCGAGAA
GTTGGATCTAATGGATGCCCTGGACAAGATGTGCGGCATACTCAGCCCGG
TGTTGGCGAAAACCCTACCCTACGGGATTGCCTATCATCATTCGGGCTTG
ACAACCGATGAGAGGAAGTACATTGAGACTGCGTATAGATTTGGAGTCGT
CACAGTCATTTGTTGCACCTCCACTTTGGCTGCAGGGGTCAACCTACCAG
CCAAGCGGGTAATCATACGTGCTCCTTATGTGGGTCAAGAATTTCTGACT
TTGTGCAAGTATAAGCAAATGGTGGGACGGGCAGGTCGCGCCGGATTGGG
TGAAGCTGGCGAGAGTATCCTGATAGCCCAGAGCAAAGACAATCTGCTGG
TCGGACAAATGCTTTTCTCGCCTATGGATAAGGCTTTAAGTTCCTTGGAT
CAAAATGAGGCAGTTGGACTGCAATCGCTTATTCTCAGCGTGGTTGGCTT
GAATTTAGCAGAATGTCGTAGAGACTTGAATCGGCTGGTAAACAGCACAC
TGTTGTCTGTGCAGGCCAAATCCCTGGAGGTGGCCGTGAACGAGATCGTG
CTCCGTATTCTCCGAGAGATGTTCAAAAATAAAGTGCTGCAGCTTGCCGA
ACCGCAGGCGAAATCTAAGATCAATTCTTCGGATATTATAACATCGCAGG
ATGTTAGTCAGGCAAATAGGCCCGCTGGCGATCGACGTTTGCTCATTGGA
CAGTCGACGCCATTTAAGCTGACCAATATTGGAAGAGCTGCCTTCAAGGC
GGGCATCGACTACAAGCGTGCAAATGCCATTCACAAGGAGCTCAAGCAGG
CCCAGCAGCAGCTCATTCTGACCAACTACTTGCACCTACTGTACCTTGTC
GTGTGCTTTAACTCGAACGAAAGAGGAGACGAGTTGTTTCCGGCAGATGC
CAGCATTCTGTTTGGAGTTTACACCTCGCTTCCACTGGACTCGCAGGCAA
TGTTCAAACAACTTGGATTTACAGAGGCCCATGCAGCTAGGCTATTTAAG
ACGCAGTCGGTGCAAGGTCCATTGTCCCTGCAGCTGAATCGCCTCTACAA
GGTGCTTATTCTGGCGGATATACTTAACCTCCTACCGATTCCCTCCGTGG
CCAGCAAGTACAACGTGGAGCGGGGAACTCTGCAGCATCTGATCAGTCAA
TCCACAGCAGCGGCGAGTGCCATTGTTCGCCTGTGCGAGGAGCTGGAAGA
GTTTTGGTGCTATAAACCATTGTTTGAGCGGATCTTGCACAAAATGGATC
GATGCGGCACATTTGAGCTGGAGCCGCTAATGGAACTGCCAGCGGTTAAG
ATCAATCGTGCCAGGCAGTTGTATGCTGCGGGTTTTCAAACCATTGGGGA
TATAGCCAGAGTGAGGCCGTCGCACTTAGTCCAATCCTTAGAGCACATGC
CGCTTAGAGTGGCCACGGAAATTGTCTCGGCAGCAAAGATAATTTTAATG
AAAAAGCTCGACCACCTGGAAGAGGAAACGGAGAACCTGAAGGACTGTTT
AAAAACGTCTGATAAAAATTAGAAGCTTTCTAGACCAT
BS16630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus301-RA | 3156 | CG7972-PA | 1..3156 | 17..3172 | 15765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus301-RA | 3364 | CG7972-RA | 30..3185 | 17..3172 | 15765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8140605..8141483 | 2075..2953 | 4395 | 100 | Plus |
3L | 28110227 | 3L | 8137837..8138632 | 17..812 | 3980 | 100 | Plus |
3L | 28110227 | 3L | 8139483..8140085 | 1472..2074 | 3000 | 99.8 | Plus |
3L | 28110227 | 3L | 8138691..8139144 | 812..1265 | 2270 | 100 | Plus |
3L | 28110227 | 3L | 8139201..8139407 | 1265..1471 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 8141556..8141690 | 2954..3088 | 675 | 100 | Plus |
3L | 28110227 | 3L | 8141750..8141835 | 3087..3172 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:10:50 has no hits.
BS16630.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:33 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 24..3179 | 17..3172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:54 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 30..3185 | 17..3172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:17:22 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 24..3179 | 17..3172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:36 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 30..3185 | 17..3172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:36 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8137837..8138632 | 17..812 | 100 | -> | Plus |
3L | 8138692..8139144 | 813..1265 | 100 | -> | Plus |
3L | 8139202..8139407 | 1266..1471 | 100 | -> | Plus |
3L | 8139483..8140085 | 1472..2074 | 99 | -> | Plus |
3L | 8140605..8141483 | 2075..2953 | 100 | -> | Plus |
3L | 8141556..8141690 | 2954..3088 | 100 | -> | Plus |
3L | 8141752..8141835 | 3089..3172 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:54 Download gff for
BS16630.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8130937..8131732 | 17..812 | 100 | -> | Plus |
arm_3L | 8131792..8132244 | 813..1265 | 100 | -> | Plus |
arm_3L | 8132302..8132507 | 1266..1471 | 100 | -> | Plus |
arm_3L | 8132583..8133185 | 1472..2074 | 99 | -> | Plus |
arm_3L | 8133705..8134583 | 2075..2953 | 100 | -> | Plus |
arm_3L | 8134656..8134790 | 2954..3088 | 100 | -> | Plus |
arm_3L | 8134852..8134935 | 3089..3172 | 100 | | Plus |
BS16630.3prime Sequence
904 bp (831 high quality bases) assembled on 2007-05-15
> BS16630.3prime
ATGGTCTAGAAAGCTTCTAATTTTTATCAGACGTTTTTAAACAGTCCTTC
AGGTTCTCCGTTTCCTCTTCCAGGTGGTCGAGCTTTTTCATTAAAATTAT
CTTTGCTGCCGAGACAATTTCCGTGGCCACTCTAAGCGGCATGTGCTCTA
AGGATTGGACTAAGTGCGACGGCCTCACTCTGGCTATATCCCCAATGGTT
TGAAAACCCGCAGCATACAACTGCCTGGCACGATTGATCTTAACCGCTGG
CAGTTCCATTAGCGGCTCCAGCTCAAATGTGCCGCATCGATCCATTTTGT
GCAAGATCCGCTCAAACAATGGTTTATAGCACCAAAACTCTTCCAGCTCC
TCGCACAGGCGAACAATGGCACTCGCCGCTGCTGTGGATTGACTGATCAG
ATGCTGCAGAGTTCCCCGCTCCACGTTGTACTTGCTGGCCACGGAGGGAA
TCGGTAGGAGGTTAAGTATATCCGCCAGAATAAGCACCTTGTAGAGGCGA
TTCAGCTGCAGGGACAATGGACCTTGCACCGACTGCGTCTTAAATAGCCT
AGCTGCATGGGCCTCTGTAAATCCAAGTTGTTTGAACATTGCCTGCGAGT
CCAGTGGAAGCGAGGTGTAAACTCCAAACAGAATGCTGGCATCTGCCGGA
AACAACTCGTCTCCTCTTTCGTTCGAGTTAAAGCACACGACAAGGTACAG
TAGGTGCAAGTAGTTGGTCAGAATGAGCTGCTGCTGGGCCTGCTTGAGCT
CCTTGTGAATGGCATTTGCACGCTTGTAGTCGATGCCCGCCTTGAAGGCA
GCTCTTCCAATATTGGTCAGCTTAAATGGCGTCGACTGTCCAATGAGCAA
ACGTCGATCGCCAGCGGGCCTATTTGCCTGACTAACATCCTGCGATGTTA
TATA
BS16630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7972-PA | 3156 | mus301-RA | 2271..3156 | 902..17 | 4430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:17:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus301-RA | 3364 | CG7972-RA | 2300..3185 | 902..17 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8140817..8141483 | 902..236 | 3335 | 100 | Minus |
3L | 28110227 | 3L | 8141556..8141690 | 235..101 | 675 | 100 | Minus |
3L | 28110227 | 3L | 8141750..8141835 | 102..17 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:17:39 has no hits.
BS16630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:17 Download gff for
BS16630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7972-PA | 2269..3156 | 17..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:49 Download gff for
BS16630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 2298..3188 | 14..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:27 Download gff for
BS16630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 2298..3188 | 14..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:27 Download gff for
BS16630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8140815..8141483 | 236..903 | 99 | -> | Minus |
3L | 8141556..8141690 | 101..235 | 100 | -> | Minus |
3L | 8141752..8141838 | 14..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:49 Download gff for
BS16630.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8133915..8134583 | 236..903 | 99 | -> | Minus |
arm_3L | 8134656..8134790 | 101..235 | 100 | -> | Minus |
arm_3L | 8134852..8134938 | 14..100 | 98 | | Minus |
BS16630.5prime Sequence
913 bp (771 high quality bases) assembled on 2007-05-15
> BS16630.5prime
GAAGTTATCAGTCGACATGGCAAATAAGCATAATTTGTGCAAAAAAAGAA
GTTTGGATTTGAGCGAGGAATCAACAAGCGAAAGCCATGCCAAGCGTCAG
TGCACCGAAAACCTCTTTTGGCCGGAGGGCGAAGACGACGACAGCTTCTT
TTCCAACGCGCATCTGGAGGATTTGCTGGACGGACGAAAGGAGGAGCTCT
TTGGCACGCAAGCAACCACAAGTACCAACAAGATGACGCAAAGTGGGTCG
GATGATGGACTGGGACTCTTTGCGGACACATCCTTTCCAAGTGCACAGAG
TGTTCCACCCAACAGTGCCTCTAAACCGGATGAAGCCAGTGCACCAACTG
ATAAACATCAAATCGACCTGGCGGACGAGGAAAACGCCGACAAGCTGTTT
AAGAAAATCAACCTCAACGATCTGAGCATTGCCGAAATGGAGGATATTTT
CCATGGCGCCGATGATTTTAGTGATCCCATGGTTCAAAACACACAACTCT
TCTTGGACGCAATGACCTTTAAGAAGCCCAAAACACCAGAGAAGCTACTG
GCCCCCCTTAAAGACGATTCCATGTCTTTCATTTCCAAATCTGTGATTGA
GGGCCTAGTGCAGGGCACTCAGTATGTGACCTGCGAAGAGCTGAAGAACC
AATCCCTCCTAGATCCAGTCAATTGGGAGACTCAGGCTTTTGCGGACTTC
GAGAAGAATAACCAAGATATAGACAAGTTTCCCAGCAAGGGCGAATTCTA
TGGCCTGCCGGATAAGGTCAAAAAGATGATTCTGGAACACAAAGGCATTA
ATAGTCTTTATGAATGGCAAGACGAGTGCCTAAATCTACCTGCCATCATG
CAGCGCAGAAATCTGATCTACGCTCTGCCCACAAGTGGTGGAATAACTCT
AGTAGCCGAAATC
BS16630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7972-PA | 3156 | mus301-RA | 1..897 | 17..913 | 4385 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus301-RA | 3364 | CG7972-RA | 30..926 | 17..913 | 4425 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:18:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8137837..8138632 | 17..812 | 3980 | 100 | Plus |
3L | 28110227 | 3L | 8138691..8138792 | 812..913 | 450 | 96.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:18:52 has no hits.
BS16630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:29 Download gff for
BS16630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7972-PA | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:00 Download gff for
BS16630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 30..926 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:55 Download gff for
BS16630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mus301-RA | 30..926 | 17..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:55 Download gff for
BS16630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8138692..8138792 | 813..913 | 96 | | Plus |
3L | 8137837..8138632 | 17..812 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:00 Download gff for
BS16630.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8130937..8131732 | 17..812 | 100 | -> | Plus |
arm_3L | 8131792..8131892 | 813..913 | 96 | | Plus |
BS16630.pep Sequence
Translation from 16 to 3171
> BS16630.pep
MANKHNLCKKRSLDLSEESTSESHAKRQCTENLFWPEGEDDDSFFSNAHL
EDLLDGRKEELFGTQATTSTNKMTQSGSDDGLGLFADTSFPSAQSVPPNS
ASKPDEASAPTDKHQIDLADEENADKLFKKINLNDLSIAEMEDIFHGADD
FSDPMVQNTQLFLDAMTFKKPKTPEKLLAPLKDDSMSFISKSVIEGLVQG
TQYVTCEELKNQSLLDPVNWETQAFADFEKNNQDIDKFPSKGEFYGLPDK
VKKMILEHKGINSLYEWQDECLNLPAIRQRKNLIYALPTSGGKTLVAEIL
MLRELLCRERNVLFILPYVSIVQEKVSAMSPFAIDLDFIVEEYTAGKGKC
PPQPRRKRRSLFIASIEKGAVLMDSLIDVQRPHEIGLVVVDELHLIGEKG
RGATLEAFLTKVMFLNANIQIVGMSATIGNLSEISSFLNADVYTRGFRPV
ELKEYIKCGPDLLEINSAGQTLEEIFVPSRSVEYNYSEAVKRADPDHLAG
LISECAPEHCCLVFCPSRKNCENVALLLSRIVPKHKFFEHRRSEKLDLMD
ALDKMCGILSPVLAKTLPYGIAYHHSGLTTDERKYIETAYRFGVVTVICC
TSTLAAGVNLPAKRVIIRAPYVGQEFLTLCKYKQMVGRAGRAGLGEAGES
ILIAQSKDNLLVGQMLFSPMDKALSSLDQNEAVGLQSLILSVVGLNLAEC
RRDLNRLVNSTLLSVQAKSLEVAVNEIVLRILREMFKNKVLQLAEPQAKS
KINSSDIITSQDVSQANRPAGDRRLLIGQSTPFKLTNIGRAAFKAGIDYK
RANAIHKELKQAQQQLILTNYLHLLYLVVCFNSNERGDELFPADASILFG
VYTSLPLDSQAMFKQLGFTEAHAARLFKTQSVQGPLSLQLNRLYKVLILA
DILNLLPIPSVASKYNVERGTLQHLISQSTAAASAIVRLCEELEEFWCYK
PLFERILHKMDRCGTFELEPLMELPAVKINRARQLYAAGFQTIGDIARVR
PSHLVQSLEHMPLRVATEIVSAAKIILMKKLDHLEEETENLKDCLKTSDK
N*
BS16630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mus301-PA | 1051 | CG7972-PA | 1..1051 | 1..1051 | 5358 | 100 | Plus |
mus308-PA | 2059 | CG6019-PA | 66..956 | 99..1008 | 820 | 28.5 | Plus |
l(2)35Df-PA | 1055 | CG4152-PA | 163..565 | 277..664 | 277 | 25.7 | Plus |
l(3)72Ab-PA | 2142 | CG5931-PA | 1344..1721 | 281..670 | 171 | 23.8 | Plus |