Clone Sequence Records
BS16631.complete Sequence
2261 bp assembled on 2009-12-07
GenBank Submission: KX805333
> BS16631.complete
GAAGTTATCAGTCGACATGGATGTTTCGGCTCTTTCGGAGACAACTTTTA
GTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTTTGTGGAGGAGAAT
GGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCAGGAGTTACGTGGC
CAAGTTGCAGCTGTATATATTCAACGTAAACAATGCTGTGGAGGAGTCAA
GTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAAGGAATCCGCAGCG
CTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGAGTGCCATGCGATT
GGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGCATGGCCACCTTGG
AGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGCCAAGGAATCGCTA
CAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAACTAGAGGATGGATT
TGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTAATAGCCCTGCAAA
AGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGCTGAGCGACAGACC
CAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTGCCTCCCCCAGCGT
GGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCCCAGCACTTCGTTC
AGATCTTCACCAGCATTCAGCGGCTGCCACAGCTGCAGCAGTATTACCGA
GCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGCAAACTCTGGAGTT
GCAGGGCACGGAGTCCCAGCCTCAGCAGCAGCAGTTTCTTACCCTTTACT
ACGATCAGCTGCTCGAGCACTGCCAGCGCCAGGTCAAGTGGTGCTCCAAC
CTTTTCGGCGAGAACTCCCCGCAGCCCTTCCTGGTTATTGCCGAACTATT
GCCGGCATTGCAACCCACACGGGATGCCCATATTTTGCAGCTTTTGAAGA
CCTCCAATGAAAGATTAGAGATGCTGGCCTTGTTCGCCAAGGTTAATCAC
AGTTTTGTGCTGCACTTAAACTCCCTTCTTGAGCAATCGCACATAACCTT
GTCCGAGGAATTGCATCGCCTGCTCGGTGAGGCGATTTTCGAGTATTTCC
ACAAGTTTATCCAACAGTACCCGCGCCTGGAGGAGACCCAACTATCCACA
CAGGTGGATCGCCTTTCCTCCAACCAAGCCACTCCCAGCGATGGTGTGCG
ACATCTAGAGGAGAGTACCCGGAAGCTCTACGAGTGGCTGAAAGAGGCCT
GCGAACGTTGTGCCTCTATTACGAGTGATTTGGCTCTTTGCAAACTTATC
ACCTTGCTAAACGGCATATTCAAGCGGCAGCTGGAGAGCTTTGGGCGCAT
CCAACGTCAGATTGGACTCAGCCTGGGATCCAGCAGCTATGCGGCTCAGA
GTGAAAACTGGTCGCTGTTGCAGTACACCATGTCTCAGCTGCAATGCCTG
GCCGACTTTCAGGTTCAACTGCATCAGTTCGAACAGGACTTGCACACGCG
CATGGTCATGTTGTCCAATAGGCTGACTAAGCCATCCAACCGAGGCCCCA
TCACCATATTCCAGACCTGTGACCATGCGGCTCGCACCCAGCTATTGAAT
AGCATAGCTGATTATCAGCAAAAGAAGTCGGAGGCAACGGATAGCCTGGG
TATCTTTCCGCAGATTTATGCCACGTTAAAGAGTCACTTTGCCGATACGC
ATGACATCACTCTTAATATATTGCTGCAACCGATTGAAACTCACTTGGCG
CACATTCGTCCGCCTGTGCAGGATCACGCTGCGTCGGGCATTGAAATGCC
CTCGTTCAGCTTCGCCCCGCAGGAAAGCATCACCCAAATAGGTCAGTATC
TACTGACTTTGCCGCAGCACCTGGAGCCGCTGCTGCTGTCGCCATCTTCT
CTGCTGAAACAGGCTCTCGAGGTGTGCAACATCAAGTATACGCAGGCCAT
TCCATGCGCCGACGTCCTGCTCTCGCTGGTCGTAGAGCAGTGCTGTGTTC
TGTACGTTACGCAAATACTGCAAATCAAGTCGTTGCCTTCCTCGGCGGCT
ACTCAGCTCAGCGTGGATATCGAGTACCTGTCCAACGTTCTTGAAGAGTT
GGGCTTGTCCATCAACCTTCAGTTGTCTCAGATCCTCACGCTGCTAAAGG
CTGCTCCAGATCAGTATCTGACCCTCAGCAGCGGATGCGAGCCGCGACTG
GTAACAGCCATTCGGCAAATGCGCAATATTATATCTACACAGTAGAAGCT
TTCTAGACCAT
BS16631.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:38:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2229 | CG31040-PA | 1..2229 | 17..2245 | 11145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..2258 | 16..2245 | 11150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29930633..29931727 | 2245..1151 | 5475 | 100 | Minus |
| 3R | 32079331 | 3R | 29931781..29932468 | 1155..468 | 3440 | 100 | Minus |
| 3R | 32079331 | 3R | 29932523..29932817 | 470..176 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 167..213 | 1906..1860 | 118 | 72.3 | Minus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9197..9243 | 1906..1860 | 118 | 72.3 | Minus |
BS16631.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:07 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1..2229 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:40:02 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2258 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:53:21 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2258 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:21 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2258 | 17..2245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:16 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 30..2258 | 17..2245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:16 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29930633..29931724 | 1154..2245 | 100 | <- | Minus |
| 3R | 29931783..29932466 | 470..1153 | 100 | <- | Minus |
| 3R | 29932524..29932817 | 176..469 | 100 | <- | Minus |
| 3R | 29932870..29933028 | 17..175 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:53:21 Download gff for
BS16631.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25756355..25757446 | 1154..2245 | 100 | <- | Minus |
| arm_3R | 25757505..25758188 | 470..1153 | 100 | <- | Minus |
| arm_3R | 25758246..25758539 | 176..469 | 100 | <- | Minus |
| arm_3R | 25758592..25758750 | 17..175 | 100 | | Minus |
BS16631.3prime Sequence
913 bp (800 high quality bases) assembled on 2007-05-15
> BS16631.3prime
ATGGTCTAGAAAGCTTCTACTGTGTAGATATAATATTGCGCATTTGCCGA
ATGGCTGTTACCAGTCGCGGCTCGCATCCGCTGCTGAGGGTCAGATACTG
ATCTGGAGCAGCCTTTAGCAGCGTGAGGATCTGAGACAACTGAAGGTTGA
TGGACAAGCCCAACTCTTCAAGAACGTTGGACAGGTACTCGATATCCACG
CTGAGCTGAGTAGCCGCCGAGGAAGGCAACGACTTGATTTGCAGTATTTG
CGTAACGTACAGAACACAGCACTGCTCTACGACCAGCGAGAGCAGGACGT
CGGCGCATGGAATGGCCTGCGTATACTTGATGTTGCACACCTCGAGAGCC
TGTTTCAGCAGAGAAGATGGCGACAGCAGCAGCGGCTCCAGGTGCTGCGG
CAAAGTCAGTAGATACTGACCTATTTGGGTGATGCTTTCCTGCGGGGCGA
AGCTGAACGAGGGCATTTCAATGCCCGACGCAGCGTGATCCTGCACAGGC
GGACGAATGTGCGCCAAGTGAGTTTCAATCGGTTGCAGCAATATATTAAG
AGTGATGTCATGCGTATCGGCAAAGTGACTCTTTAACGTGGCATAAATCT
GCGGAAAGATACCCAGGCTATCCGTTGCCTCCGACTTCTTTTGCTGATAA
TCAGCTATGCTATTCAATAGCTGGGTGCGAGCCGCATGGTCACAGGTCTG
GAATATGGTGATGGGGCCTCGGTTGGATGGCTTAGTCAGCCTATTGGACA
ACATGACCATGCGCGTGTGCAAGTCCTGTTCGAACTGATGCAGTTGAACC
TGAAAGTCGGCCAGGCATTGCAGCTGAGACATGGTGTACTGCAACAGCGA
CCAGTTTTCACTCTGAGCCGCATAGCTGCTGGATCCCAGGCTGAGTCCAA
TCTGACGTTGGAT
BS16631.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31040-PA | 2229 | Cog7-RA | 1333..2229 | 913..17 | 4485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 1362..2258 | 913..17 | 4485 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29930633..29931529 | 17..913 | 4485 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 23:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 167..213 | 356..402 | 118 | 72.3 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9197..9243 | 356..402 | 118 | 72.3 | Plus |
BS16631.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:14 Download gff for
BS16631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31040-PA | 1333..2229 | 17..913 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:32 Download gff for
BS16631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1362..2263 | 9..913 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:56 Download gff for
BS16631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 1362..2263 | 9..913 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:56 Download gff for
BS16631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29930628..29931529 | 9..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:32 Download gff for
BS16631.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25756350..25757251 | 9..913 | 99 | | Plus |
BS16631.5prime Sequence
859 bp (838 high quality bases) assembled on 2007-05-15
> BS16631.5prime
GAAGTTATCAGTCGACATGGATGTTTCGGCTCTTTCGGAGACAACTTTTA
GTCCTGCGGAATGGATAAACGCAAACTACAAGAAGTTTGTGGAGGAGAAT
GGTCGCGATGATAGCGAGGCTGCCTCCGCCTTCATCAGGAGTTACGTGGC
CAAGTTGCAGCTGTATATATTCAACGTAAACAATGCTGTGGAGGAGTCAA
GTCGCCAAGTGGTGGCCAGCATGCCAAGGATCGCTAAGGAATCCGCAGCG
CTGCAGGCAGATGTACACCGGCTGCAAGAGAAGATGAGTGCCATGCGATT
GGAGGTAGCTGCAGTGCAAAGCGAAACCGGCGAATGCATGGCCACCTTGG
AGCGCTTGAACACCAAAAGCCAAAAGCTCCAAGTGGCCAAGGAATCGCTA
CAGGAGTCTGATGGCTGGGGAAACCTACTAGCTGAACTAGAGGATGGATT
TGAACGCAATGATCTAAAGGGAGTCTGTGATAAGCTAATAGCCCTGCAAA
AGTCCCTGCACGCCCAGGAACAGCTGCCAGGCCACGCTGAGCGACAGACC
CAAGTGGAGGACTTCAAAAACCGCTTGGAGGCGCTTGCCTCCCCCAGCGT
GGTACAGTGCTTTGCTGAAGGCAATACGGAGCAAGCCCAGCACTTCGTTC
AGATCTTCACCAGCATTCAGCGGCTGCCACAGCTGCAGCAGTATTACCGA
GCTGTGCAAAAAAATTTTTGGCAGCAGCAATGGAAGCAAACTCTGGAGTT
GCAGGGCACGGAGTCCCAGCCTCAGCAGCAGCAGTTTCTTACCCTTTACT
ACGATCAGCTGCTCGAGCACTGCCAGCGCCAGGTCAAGTGGTGCTCCAAC
CTTTTCGGC
BS16631.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31040-PA | 2229 | Cog7-RA | 1..843 | 17..859 | 4215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-RA | 2340 | CG31040-RA | 29..872 | 16..859 | 4220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:11:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29932077..29932468 | 859..468 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 29932523..29932817 | 470..176 | 1475 | 100 | Minus |
| 3R | 32079331 | 3R | 29932866..29933029 | 179..16 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:11:05 has no hits.
BS16631.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:13 Download gff for
BS16631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31040-PA | 1..843 | 17..859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:11 Download gff for
BS16631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..872 | 7..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:38 Download gff for
BS16631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cog7-RA | 21..872 | 7..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:38 Download gff for
BS16631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29932077..29932466 | 470..859 | 100 | <- | Minus |
| 3R | 29932524..29932817 | 176..469 | 100 | <- | Minus |
| 3R | 29932870..29933037 | 7..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:11 Download gff for
BS16631.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25758592..25758759 | 7..175 | 97 | | Minus |
| arm_3R | 25757799..25758188 | 470..859 | 100 | <- | Minus |
| arm_3R | 25758246..25758539 | 176..469 | 100 | <- | Minus |
BS16631.pep Sequence
Translation from 16 to 2244
> BS16631.pep
MDVSALSETTFSPAEWINANYKKFVEENGRDDSEAASAFIRSYVAKLQLY
IFNVNNAVEESSRQVVASMPRIAKESAALQADVHRLQEKMSAMRLEVAAV
QSETGECMATLERLNTKSQKLQVAKESLQESDGWGNLLAELEDGFERNDL
KGVCDKLIALQKSLHAQEQLPGHAERQTQVEDFKNRLEALASPSVVQCFA
EGNTEQAQHFVQIFTSIQRLPQLQQYYRAVQKNFWQQQWKQTLELQGTES
QPQQQQFLTLYYDQLLEHCQRQVKWCSNLFGENSPQPFLVIAELLPALQP
TRDAHILQLLKTSNERLEMLALFAKVNHSFVLHLNSLLEQSHITLSEELH
RLLGEAIFEYFHKFIQQYPRLEETQLSTQVDRLSSNQATPSDGVRHLEES
TRKLYEWLKEACERCASITSDLALCKLITLLNGIFKRQLESFGRIQRQIG
LSLGSSSYAAQSENWSLLQYTMSQLQCLADFQVQLHQFEQDLHTRMVMLS
NRLTKPSNRGPITIFQTCDHAARTQLLNSIADYQQKKSEATDSLGIFPQI
YATLKSHFADTHDITLNILLQPIETHLAHIRPPVQDHAASGIEMPSFSFA
PQESITQIGQYLLTLPQHLEPLLLSPSSLLKQALEVCNIKYTQAIPCADV
LLSLVVEQCCVLYVTQILQIKSLPSSAATQLSVDIEYLSNVLEELGLSIN
LQLSQILTLLKAAPDQYLTLSSGCEPRLVTAIRQMRNIISTQ*
BS16631.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cog7-PA | 742 | CG31040-PA | 1..742 | 1..742 | 3765 | 100 | Plus |
