Clone Sequence Records
BS16641.complete Sequence
2465 bp assembled on 2009-12-07
GenBank Submission: KX802259
> BS16641.complete
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAG
CAGTTCTTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCAT
CCTGAACAATCGCTGGGATGCGTCGGCCAACGAGCCCGAGTGCCAGGAAT
CGGTTAAGTCTCAGCACACGGAACGCTGCATCGACTTCCTCACCAAGGAG
CTAAAGGTGAGCAACGAGAAGGAGGCGGCCGAAAGGGTATTCTTCGTTTC
CGCCAGGGAAACGCTGCAGGCGCGCATCGAGGAGGCCAAGGGCAATCCGC
CGCACATGGGTGCCATTGCCGAGGGCTTTCAGATACGCTACTTCGAGTTC
CAGGACTTCGAGCGCAAGTTCGAGGAGTGCATCTCGCAGAGTGCTGTGAA
AACAAAGTTCCAGCAGCACAGTTCGCGCGGCAAGAGTGTTTCGGGTGACA
TGAAATCAATGTTGGACAACATTTACGAGCGGATCACCATATTCCGCAAT
CTGAAGCAGGACCAGAAGAACCTGCTCACCGAACGCATCCAGGGCACAGA
GACGCAGATGATGCAGGTTACGCGGGAAATGAAGATGAAGATCCACAACA
TGGTCGAGGAGGTGGAGGAGAAGGTGTCAAAGGCGCTGAACGAGGAGATC
TGGCGCCTGGGCGTACTCATTGACGAGTTCAATATGCCCTTCCATCCGGA
GCGTTTGGTGCTGAACATCTACAAAAAGGAATTGAATGCCCATGTGGAGA
GCGGCCTGGGCAGCAATCTGCGCGCCCGCCTATCCATGGCCCTGGCCATG
AACGTCGAGTCCGCCCAGACGGAGATGACCGATCGCATGCACGCCCTGGT
GCCCAACGAGCAGCTCCTGGCCACCAGCACCAAGATGGTGGTGCGCACGC
AGCCCTTCGAGATGCTCTACTCACTGAATTGCCAGAACCTCTGCGCCGAC
TTCCAGGAGGATCTGGAGTTTAAGTTCAGCTGGGGCATTGCGGCGATGAT
CCAGCGCTTCACCGGCAAGGTGCGCGAGCGCAGCAAGAAGGGCCAGCCGG
CGCTGGTCAATCGACAGAGCAGTATTGGACACAGCGTATCGACGCCGACC
ACGACGCCCGTGGAAGCCACTCCTGTGTGCCTGCTGCCCGCTCCCGTTGT
GGCTGGCATTACGCCCGAGCAGCTGTCGTTGATCTCACGCTTCGCGGTGT
CCTCCATTGGATCGCAGGGCACCGTTGGTGGTCTCGTCGTAGCCGGTGTC
ATGCTGAAAACTATCGGCTGGCGTGTCCTGGTGGGCGTGGGTGCCCTCTA
CGGCTGCATCTACCTGTACGAGCGCCTCTCGTGGACAAATTCAGCCAAGG
AGCGAACGTTCAAGTCGCAGTACGTGCGCCATGCCACCAAGAAGCTCAAG
ATGATTGTCGACCTCACCTCGGCCAACTGCAGCCACCAAGTGCAGCAGGA
ATTGTCGAGCACCTTTGCCCGTTTGTGCCGCACGGTTGATACCGCCACCA
CGGACATGAATGATGAGCTCAAGACGCTGGACTCGCAGCTGAACATCCTG
GAGGCGAACCAGAAGCAATTGAAGCTGCTTCGCAACAAGGCCAACTACAT
ACAGAACGAGCTGGACATCTTCGAGCACAACTATATATCGCCGCAGTAGA
AGCTTTCTAGACCAT
BS16641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marf-RC | 2433 | CG3869-PC | 1..2433 | 17..2449 | 12150 | 100 | Plus |
Marf-RB | 2433 | CG3869-PB | 1..2433 | 17..2449 | 12150 | 100 | Plus |
Marf-RD | 2445 | CG3869-PD | 1..2445 | 17..2449 | 11995 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marf-RC | 3605 | CG3869-RC | 505..2941 | 13..2449 | 12155 | 99.9 | Plus |
Marf-RB | 3444 | CG3869-RB | 344..2780 | 13..2449 | 12155 | 99.9 | Plus |
Marf-RD | 3617 | CG3869-RD | 505..2953 | 13..2449 | 12000 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6368525..6369452 | 952..1879 | 4640 | 100 | Plus |
X | 23542271 | X | 6367718..6368059 | 613..954 | 1695 | 99.7 | Plus |
X | 23542271 | X | 6366853..6367163 | 13..323 | 1540 | 99.7 | Plus |
X | 23542271 | X | 6367358..6367648 | 323..613 | 1455 | 100 | Plus |
X | 23542271 | X | 6370059..6370260 | 2248..2449 | 1010 | 100 | Plus |
X | 23542271 | X | 6369793..6369990 | 2051..2248 | 990 | 100 | Plus |
X | 23542271 | X | 6369522..6369692 | 1880..2050 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:02:22 has no hits.
BS16641.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:48 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RC | 509..2941 | 17..2449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:19 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 348..2780 | 17..2449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:47 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RC | 509..2941 | 17..2449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:32 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 348..2780 | 17..2449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:32 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6370059..6370260 | 2248..2449 | 100 | | Plus |
X | 6366857..6367163 | 17..323 | 100 | -> | Plus |
X | 6367359..6367648 | 324..613 | 100 | -> | Plus |
X | 6367719..6368057 | 614..952 | 99 | -> | Plus |
X | 6368526..6369452 | 953..1879 | 100 | -> | Plus |
X | 6369522..6369692 | 1880..2050 | 100 | -> | Plus |
X | 6369793..6369989 | 2051..2247 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:19 Download gff for
BS16641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6264092..6264293 | 2248..2449 | 100 | | Plus |
arm_X | 6260890..6261196 | 17..323 | 100 | -> | Plus |
arm_X | 6261392..6261681 | 324..613 | 100 | -> | Plus |
arm_X | 6261752..6262090 | 614..952 | 99 | -> | Plus |
arm_X | 6262559..6263485 | 953..1879 | 100 | -> | Plus |
arm_X | 6263555..6263725 | 1880..2050 | 100 | -> | Plus |
arm_X | 6263826..6264022 | 2051..2247 | 100 | -> | Plus |
BS16641.3prime Sequence
932 bp (816 high quality bases) assembled on 2007-05-15
> BS16641.3prime
ATGGTCTAGAAAGCTTCTACTGCGGCGATATATAGTTGTGCTCGAAGATG
TCCAGCTCGTTCTGTATGTAGTTGGCCTTGTTGCGAAGCAGCTTCAATTG
CTTCTGGTTCGCCTCCAGGATGTTCAGCTGCGAGTCCAGCGTCTTGAGCT
CATCATTCATGTCCGTGGTGGCGGTATCAACCGTGCGGCACAAACGGGCA
AAGGTGCTCGACAATTCCTGCTGCACTTGGTGGCTGCAGTTGGCCGAGGT
GAGGTCGACAATCATCTTGAGCTTCTTGGTGGCATGGCGCACGTACTGCG
ACTTGAACGTTCGCTCCTTGGCTGAATTTGTCCACGAGAGGCGCTCGTAC
AGGTAGATGCAGCCGTAGAGGGCACCCACGCCCACCAGGACACGCCAGCC
GATAGTTTTCAGCATGACACCGGCTACGACGAGACCACCAACGGTGCCCT
GCGATCCAATGGAGGACACCGCGAAGCGTGAGATCAACGACAGCTGCTCG
GGCGTAATGCCAGCCACAACGGGAGCGGGCAGCAGGCACACAGGAGTGGC
TTCCACGGGCGTCGTGGTCGGCGTCGATACGCTGTGTCCAATACTGCTCT
GTCGATTGACCAGCGCCGGCTGGCCCTTCTTGCTGCGCTCGCGCACCTTG
CCGGTGAAGCGCTGGATCATCGCCGCAATGCCCCAGCTGAACTTAAACTC
CAGATCCTCCTGGAAGTCGGCGCAGAGGTTCTGGCAATTCAGTGAGTAGA
GCATCTCGAAGGGCTGCGTGCGCACCACCATCTTGGTGCTGGTGGCCAGG
AGCTGCTCGTTGGGCACCAGGGCGTGCATGCGATCGGTCATCTCCGTCTG
GGCGGACTCGACGTTCATGGGCAGGGCCATGAATAGGCGGGCGCGCAGAT
TGCTGCCCAGGCCGCTCTCCACATGGGCATTC
BS16641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3869-PB | 2433 | Marf-RB | 1518..2433 | 932..17 | 4530 | 99.7 | Minus |
CG3869-PC | 2433 | Marf-RC | 1518..2433 | 932..17 | 4530 | 99.7 | Minus |
CG3869-PA | 2502 | Marf-RA | 1933..2502 | 586..17 | 2850 | 100 | Minus |
CG3869-PA | 2502 | Marf-RA | 1518..1863 | 932..587 | 1680 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marf-RD | 3617 | CG3869-RD | 2038..2953 | 932..17 | 4550 | 99.8 | Minus |
Marf-RC | 3605 | CG3869-RC | 2026..2941 | 932..17 | 4550 | 99.8 | Minus |
Marf-RB | 3444 | CG3869-RB | 1865..2780 | 932..17 | 4550 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6369107..6369452 | 932..587 | 1700 | 99.4 | Minus |
X | 23542271 | X | 6370059..6370260 | 218..17 | 1010 | 100 | Minus |
X | 23542271 | X | 6369793..6369990 | 415..218 | 990 | 100 | Minus |
X | 23542271 | X | 6369522..6369692 | 586..416 | 855 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:34:33 has no hits.
BS16641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:31 Download gff for
BS16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3869-PC | 1518..2433 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:42 Download gff for
BS16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 1865..2780 | 17..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for
BS16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 1865..2780 | 17..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for
BS16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6369793..6369989 | 219..415 | 100 | -> | Minus |
X | 6370059..6370260 | 17..218 | 100 | | Minus |
X | 6369107..6369452 | 587..932 | 99 | -> | Minus |
X | 6369522..6369692 | 416..586 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:42 Download gff for
BS16641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6263140..6263485 | 587..932 | 99 | -> | Minus |
arm_X | 6263555..6263725 | 416..586 | 100 | -> | Minus |
arm_X | 6263826..6264022 | 219..415 | 100 | -> | Minus |
arm_X | 6264092..6264293 | 17..218 | 100 | | Minus |
BS16641.5prime Sequence
953 bp (844 high quality bases) assembled on 2007-05-15
> BS16641.5prime
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAG
CAGTTCTTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCAT
CCTGAAACATCGCTGGGATGCGTCGGCCCACGAGCCCGAGTGCCAGGAAT
CGG
BS16641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3869-PA | 2502 | Marf-RA | 1..937 | 17..953 | 4585 | 99.5 | Plus |
CG3869-PB | 2433 | Marf-RB | 1..937 | 17..953 | 4585 | 99.5 | Plus |
CG3869-PC | 2433 | Marf-RC | 1..937 | 17..953 | 4585 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marf-RD | 3617 | CG3869-RD | 505..1445 | 13..953 | 4630 | 99.5 | Plus |
Marf-RC | 3605 | CG3869-RC | 505..1445 | 13..953 | 4630 | 99.5 | Plus |
Marf-RB | 3444 | CG3869-RB | 344..1284 | 13..953 | 4630 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6367718..6368058 | 613..953 | 1645 | 98.8 | Plus |
X | 23542271 | X | 6366853..6367163 | 13..323 | 1540 | 99.7 | Plus |
X | 23542271 | X | 6367358..6367648 | 323..613 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:22 has no hits.
BS16641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:35 Download gff for
BS16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3869-PC | 1..937 | 17..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:48 Download gff for
BS16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 340..1284 | 7..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:29 Download gff for
BS16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Marf-RB | 340..1284 | 7..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:29 Download gff for
BS16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6366849..6367163 | 7..323 | 98 | -> | Plus |
X | 6367359..6367648 | 324..613 | 100 | -> | Plus |
X | 6367719..6368058 | 614..953 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:48 Download gff for
BS16641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6260882..6261196 | 7..323 | 98 | -> | Plus |
arm_X | 6261392..6261681 | 324..613 | 100 | -> | Plus |
arm_X | 6261752..6262091 | 614..953 | 98 | | Plus |
BS16641.pep Sequence
Translation from 16 to 2448
> BS16641.pep
MAAYLNRTISMVTGQTGPADDDRHASSTDTVDKSGPGSPLSRFNSSLQQS
GSTMAANLLPESRLYQSNDKSPLQIFVRAKKKINDIYGEIEEYVHETTTF
INALHAEAEIVDKAERELFESYVYKVAAIREVLQRDHMKVAFFGRTSNGK
SSVINAMLREKILPSGIGHTTNCFCQVEGSNGGEAYLMTEGSEEKLNVVN
IKQLANALCQEKLCESSLVRIFWPRERCSLLRDDVVFVDSPGVDVSANLD
DWIDNHCLNADVFVLVLNAESTMTRAEKQFFHTVSQKLSKPNIFILNNRW
DASANEPECQESVKSQHTERCIDFLTKELKVSNEKEAAERVFFVSARETL
QARIEEAKGNPPHMGAIAEGFQIRYFEFQDFERKFEECISQSAVKTKFQQ
HSSRGKSVSGDMKSMLDNIYERITIFRNLKQDQKNLLTERIQGTETQMMQ
VTREMKMKIHNMVEEVEEKVSKALNEEIWRLGVLIDEFNMPFHPERLVLN
IYKKELNAHVESGLGSNLRARLSMALAMNVESAQTEMTDRMHALVPNEQL
LATSTKMVVRTQPFEMLYSLNCQNLCADFQEDLEFKFSWGIAAMIQRFTG
KVRERSKKGQPALVNRQSSIGHSVSTPTTTPVEATPVCLLPAPVVAGITP
EQLSLISRFAVSSIGSQGTVGGLVVAGVMLKTIGWRVLVGVGALYGCIYL
YERLSWTNSAKERTFKSQYVRHATKKLKMIVDLTSANCSHQVQQELSSTF
ARLCRTVDTATTDMNDELKTLDSQLNILEANQKQLKLLRNKANYIQNELD
IFEHNYISPQ*
BS16641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Marf-PC | 810 | CG3869-PC | 1..810 | 1..810 | 4141 | 100 | Plus |
Marf-PB | 810 | CG3869-PB | 1..810 | 1..810 | 4141 | 100 | Plus |
Marf-PD | 814 | CG3869-PD | 1..814 | 1..810 | 4126 | 99.5 | Plus |
fzo-PA | 718 | CG4568-PA | 14..716 | 62..808 | 1024 | 34.7 | Plus |