Clone BS16641 Report

Search the DGRC for BS16641

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptMarf-RB
Protein status:BS16641.pep: full length peptide match
Sequenced Size:2465

Clone Sequence Records

BS16641.complete Sequence

2465 bp assembled on 2009-12-07

GenBank Submission: KX802259

> BS16641.complete
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAG
CAGTTCTTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCAT
CCTGAACAATCGCTGGGATGCGTCGGCCAACGAGCCCGAGTGCCAGGAAT
CGGTTAAGTCTCAGCACACGGAACGCTGCATCGACTTCCTCACCAAGGAG
CTAAAGGTGAGCAACGAGAAGGAGGCGGCCGAAAGGGTATTCTTCGTTTC
CGCCAGGGAAACGCTGCAGGCGCGCATCGAGGAGGCCAAGGGCAATCCGC
CGCACATGGGTGCCATTGCCGAGGGCTTTCAGATACGCTACTTCGAGTTC
CAGGACTTCGAGCGCAAGTTCGAGGAGTGCATCTCGCAGAGTGCTGTGAA
AACAAAGTTCCAGCAGCACAGTTCGCGCGGCAAGAGTGTTTCGGGTGACA
TGAAATCAATGTTGGACAACATTTACGAGCGGATCACCATATTCCGCAAT
CTGAAGCAGGACCAGAAGAACCTGCTCACCGAACGCATCCAGGGCACAGA
GACGCAGATGATGCAGGTTACGCGGGAAATGAAGATGAAGATCCACAACA
TGGTCGAGGAGGTGGAGGAGAAGGTGTCAAAGGCGCTGAACGAGGAGATC
TGGCGCCTGGGCGTACTCATTGACGAGTTCAATATGCCCTTCCATCCGGA
GCGTTTGGTGCTGAACATCTACAAAAAGGAATTGAATGCCCATGTGGAGA
GCGGCCTGGGCAGCAATCTGCGCGCCCGCCTATCCATGGCCCTGGCCATG
AACGTCGAGTCCGCCCAGACGGAGATGACCGATCGCATGCACGCCCTGGT
GCCCAACGAGCAGCTCCTGGCCACCAGCACCAAGATGGTGGTGCGCACGC
AGCCCTTCGAGATGCTCTACTCACTGAATTGCCAGAACCTCTGCGCCGAC
TTCCAGGAGGATCTGGAGTTTAAGTTCAGCTGGGGCATTGCGGCGATGAT
CCAGCGCTTCACCGGCAAGGTGCGCGAGCGCAGCAAGAAGGGCCAGCCGG
CGCTGGTCAATCGACAGAGCAGTATTGGACACAGCGTATCGACGCCGACC
ACGACGCCCGTGGAAGCCACTCCTGTGTGCCTGCTGCCCGCTCCCGTTGT
GGCTGGCATTACGCCCGAGCAGCTGTCGTTGATCTCACGCTTCGCGGTGT
CCTCCATTGGATCGCAGGGCACCGTTGGTGGTCTCGTCGTAGCCGGTGTC
ATGCTGAAAACTATCGGCTGGCGTGTCCTGGTGGGCGTGGGTGCCCTCTA
CGGCTGCATCTACCTGTACGAGCGCCTCTCGTGGACAAATTCAGCCAAGG
AGCGAACGTTCAAGTCGCAGTACGTGCGCCATGCCACCAAGAAGCTCAAG
ATGATTGTCGACCTCACCTCGGCCAACTGCAGCCACCAAGTGCAGCAGGA
ATTGTCGAGCACCTTTGCCCGTTTGTGCCGCACGGTTGATACCGCCACCA
CGGACATGAATGATGAGCTCAAGACGCTGGACTCGCAGCTGAACATCCTG
GAGGCGAACCAGAAGCAATTGAAGCTGCTTCGCAACAAGGCCAACTACAT
ACAGAACGAGCTGGACATCTTCGAGCACAACTATATATCGCCGCAGTAGA
AGCTTTCTAGACCAT

BS16641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:02:23
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RC 2433 CG3869-PC 1..2433 17..2449 12150 100 Plus
Marf-RB 2433 CG3869-PB 1..2433 17..2449 12150 100 Plus
Marf-RD 2445 CG3869-PD 1..2445 17..2449 11995 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RC 3605 CG3869-RC 505..2941 13..2449 12155 99.9 Plus
Marf-RB 3444 CG3869-RB 344..2780 13..2449 12155 99.9 Plus
Marf-RD 3617 CG3869-RD 505..2953 13..2449 12000 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6368525..6369452 952..1879 4640 100 Plus
X 23542271 X 6367718..6368059 613..954 1695 99.7 Plus
X 23542271 X 6366853..6367163 13..323 1540 99.7 Plus
X 23542271 X 6367358..6367648 323..613 1455 100 Plus
X 23542271 X 6370059..6370260 2248..2449 1010 100 Plus
X 23542271 X 6369793..6369990 2051..2248 990 100 Plus
X 23542271 X 6369522..6369692 1880..2050 855 100 Plus
Blast to na_te.dros performed on 2014-11-28 02:02:22 has no hits.

BS16641.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:48 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RC 509..2941 17..2449 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:19 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 348..2780 17..2449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:22:47 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RC 509..2941 17..2449 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:32 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 348..2780 17..2449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:32 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
X 6370059..6370260 2248..2449 100   Plus
X 6366857..6367163 17..323 100 -> Plus
X 6367359..6367648 324..613 100 -> Plus
X 6367719..6368057 614..952 99 -> Plus
X 6368526..6369452 953..1879 100 -> Plus
X 6369522..6369692 1880..2050 100 -> Plus
X 6369793..6369989 2051..2247 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:19 Download gff for BS16641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6264092..6264293 2248..2449 100   Plus
arm_X 6260890..6261196 17..323 100 -> Plus
arm_X 6261392..6261681 324..613 100 -> Plus
arm_X 6261752..6262090 614..952 99 -> Plus
arm_X 6262559..6263485 953..1879 100 -> Plus
arm_X 6263555..6263725 1880..2050 100 -> Plus
arm_X 6263826..6264022 2051..2247 100 -> Plus

BS16641.3prime Sequence

932 bp (816 high quality bases) assembled on 2007-05-15

> BS16641.3prime
ATGGTCTAGAAAGCTTCTACTGCGGCGATATATAGTTGTGCTCGAAGATG
TCCAGCTCGTTCTGTATGTAGTTGGCCTTGTTGCGAAGCAGCTTCAATTG
CTTCTGGTTCGCCTCCAGGATGTTCAGCTGCGAGTCCAGCGTCTTGAGCT
CATCATTCATGTCCGTGGTGGCGGTATCAACCGTGCGGCACAAACGGGCA
AAGGTGCTCGACAATTCCTGCTGCACTTGGTGGCTGCAGTTGGCCGAGGT
GAGGTCGACAATCATCTTGAGCTTCTTGGTGGCATGGCGCACGTACTGCG
ACTTGAACGTTCGCTCCTTGGCTGAATTTGTCCACGAGAGGCGCTCGTAC
AGGTAGATGCAGCCGTAGAGGGCACCCACGCCCACCAGGACACGCCAGCC
GATAGTTTTCAGCATGACACCGGCTACGACGAGACCACCAACGGTGCCCT
GCGATCCAATGGAGGACACCGCGAAGCGTGAGATCAACGACAGCTGCTCG
GGCGTAATGCCAGCCACAACGGGAGCGGGCAGCAGGCACACAGGAGTGGC
TTCCACGGGCGTCGTGGTCGGCGTCGATACGCTGTGTCCAATACTGCTCT
GTCGATTGACCAGCGCCGGCTGGCCCTTCTTGCTGCGCTCGCGCACCTTG
CCGGTGAAGCGCTGGATCATCGCCGCAATGCCCCAGCTGAACTTAAACTC
CAGATCCTCCTGGAAGTCGGCGCAGAGGTTCTGGCAATTCAGTGAGTAGA
GCATCTCGAAGGGCTGCGTGCGCACCACCATCTTGGTGCTGGTGGCCAGG
AGCTGCTCGTTGGGCACCAGGGCGTGCATGCGATCGGTCATCTCCGTCTG
GGCGGACTCGACGTTCATGGGCAGGGCCATGAATAGGCGGGCGCGCAGAT
TGCTGCCCAGGCCGCTCTCCACATGGGCATTC

BS16641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3869-PB 2433 Marf-RB 1518..2433 932..17 4530 99.7 Minus
CG3869-PC 2433 Marf-RC 1518..2433 932..17 4530 99.7 Minus
CG3869-PA 2502 Marf-RA 1933..2502 586..17 2850 100 Minus
CG3869-PA 2502 Marf-RA 1518..1863 932..587 1680 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RD 3617 CG3869-RD 2038..2953 932..17 4550 99.8 Minus
Marf-RC 3605 CG3869-RC 2026..2941 932..17 4550 99.8 Minus
Marf-RB 3444 CG3869-RB 1865..2780 932..17 4550 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:34:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6369107..6369452 932..587 1700 99.4 Minus
X 23542271 X 6370059..6370260 218..17 1010 100 Minus
X 23542271 X 6369793..6369990 415..218 990 100 Minus
X 23542271 X 6369522..6369692 586..416 855 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:34:33 has no hits.

BS16641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:31 Download gff for BS16641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3869-PC 1518..2433 17..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:42 Download gff for BS16641.3prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 1865..2780 17..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:59:15 Download gff for BS16641.3prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 1865..2780 17..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:59:15 Download gff for BS16641.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6369793..6369989 219..415 100 -> Minus
X 6370059..6370260 17..218 100   Minus
X 6369107..6369452 587..932 99 -> Minus
X 6369522..6369692 416..586 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:42 Download gff for BS16641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6263140..6263485 587..932 99 -> Minus
arm_X 6263555..6263725 416..586 100 -> Minus
arm_X 6263826..6264022 219..415 100 -> Minus
arm_X 6264092..6264293 17..218 100   Minus

BS16641.5prime Sequence

953 bp (844 high quality bases) assembled on 2007-05-15

> BS16641.5prime
GAAGTTATCAGTCGACATGGCGGCCTACTTGAACCGCACCATCTCGATGG
TGACCGGGCAAACGGGCCCCGCCGACGACGACCGTCACGCCTCCTCCACG
GACACGGTGGACAAATCCGGACCCGGTTCCCCGCTATCCCGGTTCAACTC
ATCGCTGCAACAATCCGGCTCCACAATGGCCGCCAATCTGCTACCGGAAT
CGCGGCTCTATCAATCCAACGACAAATCACCGCTCCAGATCTTTGTGCGC
GCCAAAAAGAAGATCAACGATATCTACGGCGAGATCGAGGAGTATGTCCA
TGAGACGACCACCTTTATCAACGCCCTGCACGCGGAAGCGGAGATCGTGG
ACAAGGCGGAACGGGAGCTGTTCGAAAGCTATGTGTACAAGGTGGCGGCC
ATTCGCGAAGTACTGCAGCGGGATCACATGAAGGTGGCCTTCTTTGGACG
CACCTCCAACGGCAAGAGCTCGGTGATTAATGCCATGTTGCGCGAGAAGA
TCCTGCCCAGCGGCATTGGGCACACCACGAATTGCTTCTGCCAAGTGGAG
GGCAGCAATGGCGGCGAGGCGTATCTTATGACAGAGGGCTCCGAGGAGAA
GCTAAATGTGGTGAACATCAAACAACTGGCGAATGCCTTGTGCCAGGAGA
AGCTCTGCGAGAGCAGTTTGGTGCGCATCTTTTGGCCGAGGGAACGCTGC
AGCCTGCTGCGCGACGATGTCGTCTTTGTGGACTCACCTGGTGTGGATGT
GTCGGCCAATTTGGACGACTGGATCGATAACCATTGCCTGAACGCCGATG
TCTTTGTGCTGGTCCTGAATGCCGAGTCAACGATGACACGTGCGGAGAAG
CAGTTCTTTCACACCGTCTCGCAGAAGCTAAGCAAGCCGAACATCTTCAT
CCTGAAACATCGCTGGGATGCGTCGGCCCACGAGCCCGAGTGCCAGGAAT
CGG

BS16641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3869-PA 2502 Marf-RA 1..937 17..953 4585 99.5 Plus
CG3869-PB 2433 Marf-RB 1..937 17..953 4585 99.5 Plus
CG3869-PC 2433 Marf-RC 1..937 17..953 4585 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:23
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-RD 3617 CG3869-RD 505..1445 13..953 4630 99.5 Plus
Marf-RC 3605 CG3869-RC 505..1445 13..953 4630 99.5 Plus
Marf-RB 3444 CG3869-RB 344..1284 13..953 4630 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6367718..6368058 613..953 1645 98.8 Plus
X 23542271 X 6366853..6367163 13..323 1540 99.7 Plus
X 23542271 X 6367358..6367648 323..613 1455 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:22 has no hits.

BS16641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:35 Download gff for BS16641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3869-PC 1..937 17..953 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:48 Download gff for BS16641.5prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 340..1284 7..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:29 Download gff for BS16641.5prime
Subject Subject Range Query Range Percent Splice Strand
Marf-RB 340..1284 7..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:29 Download gff for BS16641.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6366849..6367163 7..323 98 -> Plus
X 6367359..6367648 324..613 100 -> Plus
X 6367719..6368058 614..953 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:48 Download gff for BS16641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6260882..6261196 7..323 98 -> Plus
arm_X 6261392..6261681 324..613 100 -> Plus
arm_X 6261752..6262091 614..953 98   Plus

BS16641.pep Sequence

Translation from 16 to 2448

> BS16641.pep
MAAYLNRTISMVTGQTGPADDDRHASSTDTVDKSGPGSPLSRFNSSLQQS
GSTMAANLLPESRLYQSNDKSPLQIFVRAKKKINDIYGEIEEYVHETTTF
INALHAEAEIVDKAERELFESYVYKVAAIREVLQRDHMKVAFFGRTSNGK
SSVINAMLREKILPSGIGHTTNCFCQVEGSNGGEAYLMTEGSEEKLNVVN
IKQLANALCQEKLCESSLVRIFWPRERCSLLRDDVVFVDSPGVDVSANLD
DWIDNHCLNADVFVLVLNAESTMTRAEKQFFHTVSQKLSKPNIFILNNRW
DASANEPECQESVKSQHTERCIDFLTKELKVSNEKEAAERVFFVSARETL
QARIEEAKGNPPHMGAIAEGFQIRYFEFQDFERKFEECISQSAVKTKFQQ
HSSRGKSVSGDMKSMLDNIYERITIFRNLKQDQKNLLTERIQGTETQMMQ
VTREMKMKIHNMVEEVEEKVSKALNEEIWRLGVLIDEFNMPFHPERLVLN
IYKKELNAHVESGLGSNLRARLSMALAMNVESAQTEMTDRMHALVPNEQL
LATSTKMVVRTQPFEMLYSLNCQNLCADFQEDLEFKFSWGIAAMIQRFTG
KVRERSKKGQPALVNRQSSIGHSVSTPTTTPVEATPVCLLPAPVVAGITP
EQLSLISRFAVSSIGSQGTVGGLVVAGVMLKTIGWRVLVGVGALYGCIYL
YERLSWTNSAKERTFKSQYVRHATKKLKMIVDLTSANCSHQVQQELSSTF
ARLCRTVDTATTDMNDELKTLDSQLNILEANQKQLKLLRNKANYIQNELD
IFEHNYISPQ*

BS16641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Marf-PC 810 CG3869-PC 1..810 1..810 4141 100 Plus
Marf-PB 810 CG3869-PB 1..810 1..810 4141 100 Plus
Marf-PD 814 CG3869-PD 1..814 1..810 4126 99.5 Plus
fzo-PA 718 CG4568-PA 14..716 62..808 1024 34.7 Plus