Clone BS16643 Report

Search the DGRC for BS16643

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGAP54D-RB
Protein status:BS16643.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16643.3prime Sequence

899 bp (821 high quality bases) assembled on 2007-05-15

> BS16643.3prime
ATGGTCTAGAAAGCTTTCAAGTAATTTTGAAATTACTAGCAGAGGTATTT
AAATCATAAGACCCAGAGTGAAAGGGCATTAAAGCATTAAATATATAAAG
TAATTTACCCTGCCCATTTTGCTTGTTGAACTGCTTAATCAAACGCCTCT
TCTTAGAGGACTCCGGCATGCTCTGGATATGGGCATAAAGTTGCGCCAGC
TCCGTGTCCGTATTGTTCGTATTGGTGGCCGCTGCAGTGGCGGCTCGGTC
TACAAAAGTGTACACCGTGTTGACCGTCGAGACGTCCGAGATGGACTCGT
CAAGCGTTTGTTCCGGCGACATGGTTTTCTTTCTTTTGCGCTCGAGAAAG
TACGCCCGGATGTCGGTAGACAGCTTTCCAGGCACCTCGAAGATGTCCAG
TCCACGGACGATCATATAGGTCACGATGCTGGACATTTTCTTGGCCTGGT
AGTGCAGGACCTCGGGTGGCAGTTGCCTTGGGCAAATTAGGTGCGGTGTG
AAGAGAGTGGCCAAGTTATCGGCGCTCATCTTGTTGCTTTTCTCATGCTT
GGCCACAGCATGCAGCATCTCAATGATGTGCTGAAGAAGTTCACGATGTT
CTTCGGGCAGGAGGAGAAGTAGCAGCTGCACGGAGTTGAGAAGATGTTGT
TGACGCTCAGCAGTGGCAGTCGTCTGACCATTGAGCGCCTGGCAGAGTGG
GGCTATCTGCAGATGCGCCGGATAGTGGGCATCCGTAAGCAGCGGTTCTG
GAAGTTCGGATAGAAAACCTTTGAAAACGGTCGCGCAATCGTGAGCGGAG
AAGCCCGCAAGTTCAAATTCAGTGGTTTGTCGTGCTGGATGTGCATCCGA
AGTTCGTTTTGTCGGGACACCGCACCAGCCTTGCAGAATANGCCTTCCT

BS16643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6477-PB 1275 RhoGAP54D-RB 478..1275 814..17 3990 100 Minus
CG6477-PA 3015 RhoGAP54D-RA 478..1184 814..108 3535 100 Minus
CG6477-PB 1275 RhoGAP54D-RB 392..477 899..814 386 97.6 Minus
CG6477-PA 3015 RhoGAP54D-RA 392..477 899..814 386 97.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:15
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-RC 3595 CG6477-RC 726..1518 899..108 3914 99.6 Minus
RhoGAP54D-RA 3791 CG6477-RA 922..1714 899..108 3914 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17588961..17589845 16..899 4349 99.7 Plus
Blast to na_te.dros performed on 2015-02-10 15:23:11 has no hits.

BS16643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:41 Download gff for BS16643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6477-PB 392..1275 17..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:59 Download gff for BS16643.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 922..1714 108..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:07 Download gff for BS16643.3prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 922..1714 108..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:07 Download gff for BS16643.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17588959..17589845 11..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:59 Download gff for BS16643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13476464..13477350 11..899 99   Plus

BS16643.5prime Sequence

918 bp (827 high quality bases) assembled on 2007-05-15

> BS16643.5prime
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGGCACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTT

BS16643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6477-PA 3015 RhoGAP54D-RA 1..902 17..918 4460 99.7 Plus
CG6477-PB 1275 RhoGAP54D-RB 1..902 17..918 4460 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:06
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-RC 3595 CG6477-RC 334..1236 16..918 4485 99.8 Plus
RhoGAP54D-RA 3791 CG6477-RA 530..1432 16..918 4485 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17589335..17589854 918..399 2570 99.6 Minus
2R 25286936 2R 17589908..17590140 398..166 1165 100 Minus
2R 25286936 2R 17590206..17590355 165..16 750 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:14:04 has no hits.

BS16643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:33 Download gff for BS16643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6477-PB 1..902 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:28 Download gff for BS16643.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 523..1432 9..918 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:39 Download gff for BS16643.5prime
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 523..1432 9..918 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:39 Download gff for BS16643.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17589335..17589854 399..918 99 <- Minus
2R 17589908..17590140 166..398 100 <- Minus
2R 17590206..17590362 9..165 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:28 Download gff for BS16643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13476840..13477359 399..918 99 <- Minus
arm_2R 13477413..13477645 166..398 100 <- Minus
arm_2R 13477711..13477867 9..165 98   Minus

BS16643.complete Sequence

1307 bp assembled on 2007-05-07

GenBank Submission: FJ638169

> BS16643.complete
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGTCTACCGACATCC
GGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATGTCGCCGGAACAA
ACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAACACGGTGTACAC
TTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATACGAACAATACGG
ACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGCATGCCGGAGTCC
TCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCAAAATGGGCAGGG
TAAATTACTTTATATATTTAATGCTTTAATGCCCTTTCACTCTGGGTCTT
ATGATTTAAATACCTCTGCTAGTAATTTCAAAATTACTTGAAAGCTTTCT
AGACCAT

BS16643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-RC 3015 CG6477-PC 1..1184 17..1200 5920 100 Plus
RhoGAP54D-RA 3015 CG6477-PA 1..1184 17..1200 5920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-RC 3595 CG6477-RC 334..1518 16..1200 5925 100 Plus
RhoGAP54D-RA 3791 CG6477-RA 530..1714 16..1200 5925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17588961..17589854 1292..399 4470 100 Minus
2R 25286936 2R 17589908..17590140 398..166 1165 100 Minus
2R 25286936 2R 17590206..17590355 165..16 750 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:05:28 has no hits.

BS16643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:41 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 1..1275 17..1291 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:51 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 521..1806 9..1297 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:00 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 531..1714 17..1200 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:41 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RB 521..1806 9..1297 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:35 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP54D-RA 531..1714 17..1200 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:35 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17588963..17589854 399..1290 100 <- Minus
2R 17589908..17590140 166..398 100 <- Minus
2R 17590206..17590354 17..165 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:00 Download gff for BS16643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13476468..13477359 399..1290 100 <- Minus
arm_2R 13477413..13477645 166..398 100 <- Minus
arm_2R 13477711..13477859 17..165 100   Minus

BS16643.pep Sequence

Translation from 16 to 1290

> BS16643.pep
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI
FNALMPFHSGSYDLNTSASNFKIT*

BS16643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP54D-PC 1004 CG6477-PC 1..400 1..400 2042 99 Plus
RhoGAP54D-PA 1004 CG6477-PA 1..400 1..400 2042 99 Plus
RhoGAP92B-PC 543 CG4755-PC 67..311 113..360 182 27.7 Plus
RhoGAP92B-PD 648 CG4755-PD 172..416 113..360 182 27.7 Plus
conu-PI 629 CG17082-PI 390..583 124..319 160 24.2 Plus