Clone Sequence Records
BS16643.3prime Sequence
899 bp (821 high quality bases) assembled on 2007-05-15
> BS16643.3prime
ATGGTCTAGAAAGCTTTCAAGTAATTTTGAAATTACTAGCAGAGGTATTT
AAATCATAAGACCCAGAGTGAAAGGGCATTAAAGCATTAAATATATAAAG
TAATTTACCCTGCCCATTTTGCTTGTTGAACTGCTTAATCAAACGCCTCT
TCTTAGAGGACTCCGGCATGCTCTGGATATGGGCATAAAGTTGCGCCAGC
TCCGTGTCCGTATTGTTCGTATTGGTGGCCGCTGCAGTGGCGGCTCGGTC
TACAAAAGTGTACACCGTGTTGACCGTCGAGACGTCCGAGATGGACTCGT
CAAGCGTTTGTTCCGGCGACATGGTTTTCTTTCTTTTGCGCTCGAGAAAG
TACGCCCGGATGTCGGTAGACAGCTTTCCAGGCACCTCGAAGATGTCCAG
TCCACGGACGATCATATAGGTCACGATGCTGGACATTTTCTTGGCCTGGT
AGTGCAGGACCTCGGGTGGCAGTTGCCTTGGGCAAATTAGGTGCGGTGTG
AAGAGAGTGGCCAAGTTATCGGCGCTCATCTTGTTGCTTTTCTCATGCTT
GGCCACAGCATGCAGCATCTCAATGATGTGCTGAAGAAGTTCACGATGTT
CTTCGGGCAGGAGGAGAAGTAGCAGCTGCACGGAGTTGAGAAGATGTTGT
TGACGCTCAGCAGTGGCAGTCGTCTGACCATTGAGCGCCTGGCAGAGTGG
GGCTATCTGCAGATGCGCCGGATAGTGGGCATCCGTAAGCAGCGGTTCTG
GAAGTTCGGATAGAAAACCTTTGAAAACGGTCGCGCAATCGTGAGCGGAG
AAGCCCGCAAGTTCAAATTCAGTGGTTTGTCGTGCTGGATGTGCATCCGA
AGTTCGTTTTGTCGGGACACCGCACCAGCCTTGCAGAATANGCCTTCCT
BS16643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6477-PB | 1275 | RhoGAP54D-RB | 478..1275 | 814..17 | 3990 | 100 | Minus |
CG6477-PA | 3015 | RhoGAP54D-RA | 478..1184 | 814..108 | 3535 | 100 | Minus |
CG6477-PB | 1275 | RhoGAP54D-RB | 392..477 | 899..814 | 386 | 97.6 | Minus |
CG6477-PA | 3015 | RhoGAP54D-RA | 392..477 | 899..814 | 386 | 97.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP54D-RC | 3595 | CG6477-RC | 726..1518 | 899..108 | 3914 | 99.6 | Minus |
RhoGAP54D-RA | 3791 | CG6477-RA | 922..1714 | 899..108 | 3914 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:23:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17588961..17589845 | 16..899 | 4349 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:23:11 has no hits.
BS16643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:41 Download gff for
BS16643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6477-PB | 392..1275 | 17..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:59 Download gff for
BS16643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 922..1714 | 108..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:07 Download gff for
BS16643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 922..1714 | 108..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:07 Download gff for
BS16643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17588959..17589845 | 11..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:59 Download gff for
BS16643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13476464..13477350 | 11..899 | 99 | | Plus |
BS16643.5prime Sequence
918 bp (827 high quality bases) assembled on 2007-05-15
> BS16643.5prime
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGGCACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTT
BS16643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6477-PA | 3015 | RhoGAP54D-RA | 1..902 | 17..918 | 4460 | 99.7 | Plus |
CG6477-PB | 1275 | RhoGAP54D-RB | 1..902 | 17..918 | 4460 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:14:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP54D-RC | 3595 | CG6477-RC | 334..1236 | 16..918 | 4485 | 99.8 | Plus |
RhoGAP54D-RA | 3791 | CG6477-RA | 530..1432 | 16..918 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:14:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17589335..17589854 | 918..399 | 2570 | 99.6 | Minus |
2R | 25286936 | 2R | 17589908..17590140 | 398..166 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 17590206..17590355 | 165..16 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:14:04 has no hits.
BS16643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:33 Download gff for
BS16643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6477-PB | 1..902 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:28 Download gff for
BS16643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 523..1432 | 9..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:39 Download gff for
BS16643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 523..1432 | 9..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:39 Download gff for
BS16643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17589335..17589854 | 399..918 | 99 | <- | Minus |
2R | 17589908..17590140 | 166..398 | 100 | <- | Minus |
2R | 17590206..17590362 | 9..165 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:28 Download gff for
BS16643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13476840..13477359 | 399..918 | 99 | <- | Minus |
arm_2R | 13477413..13477645 | 166..398 | 100 | <- | Minus |
arm_2R | 13477711..13477867 | 9..165 | 98 | | Minus |
BS16643.complete Sequence
1307 bp assembled on 2007-05-07
GenBank Submission: FJ638169
> BS16643.complete
GAAGTTATCAGTCGACATGGAAGCAACGATGGATACGGACCATGCGAACC
TAAATGACTTCAGGGATCGCGATCTGGCCACGCGCATGCGCCGCTGCAAT
TACGAAAAATACAAATCCTTGGTGCGCATGCACCTATCGTTTGAATTGGA
GCTCAATACGGATGAATTCGATCTCCCCTGTCACGAGATTGTCTACGAGG
ACAAGGGCAAGCTGAAGAAGTGGAACCGCCTGTCTAAAAAACATCGTTTG
GGACATGGAGCAGCTGCCACATCCTGTGCCGCCGGCTCCGCCAGTAAATC
CGTGGGTAATAGTCCCACAGAGACACTGCAACAGCAGATTGATCCGGGAT
TCTTAATGCATCTGCAAGAGCTCAAGGAGTTCCTAATGCTGGAGAAGAAT
CTCACCCAGGAAGGCCTATTCCGCAAGGCTGGTGCGGTGTCCCGACAAAA
CGAACTTCGGATGCACATCCAGCACGACAAACCACTGAATTTGGAACTTG
CGGGCTTCTCCGCTCACGATTGCGCGACCGTTTTCAAAGGTTTTCTATCC
GAACTTCCAGAACCGCTGCTTACGGATGCCCACTATCCGGCGCATCTGCA
GATAGCCCCACTCTGCCAGGCGCTCAATGGTCAGACGACTGCCACTGCTG
AGCGTCAACAACATCTTCTCAACTCCGTGCAGCTGCTACTTCTCCTCCTG
CCCGAAGAACATCGTGAACTTCTTCAGCACATCATTGAGATGCTGCATGC
TGTGGCCAAGCATGAGAAAAGCAACAAGATGAGCGCCGATAACTTGGCCA
CTCTCTTCACACCGCACCTAATTTGCCCAAGGCAACTGCCACCCGAGGTC
CTGCACTACCAGGCCAAGAAAATGTCCAGCATCGTGACCTATATGATCGT
CCGTGGACTGGACATCTTCGAGGTGCCTGGAAAGCTGTCTACCGACATCC
GGGCGTACTTTCTCGAGCGCAAAAGAAAGAAAACCATGTCGCCGGAACAA
ACGCTTGACGAGTCCATCTCGGACGTCTCGACGGTCAACACGGTGTACAC
TTTTGTAGACCGAGCCGCCACTGCAGCGGCCACCAATACGAACAATACGG
ACACGGAGCTGGCGCAACTTTATGCCCATATCCAGAGCATGCCGGAGTCC
TCTAAGAAGAGGCGTTTGATTAAGCAGTTCAACAAGCAAAATGGGCAGGG
TAAATTACTTTATATATTTAATGCTTTAATGCCCTTTCACTCTGGGTCTT
ATGATTTAAATACCTCTGCTAGTAATTTCAAAATTACTTGAAAGCTTTCT
AGACCAT
BS16643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP54D-RC | 3015 | CG6477-PC | 1..1184 | 17..1200 | 5920 | 100 | Plus |
RhoGAP54D-RA | 3015 | CG6477-PA | 1..1184 | 17..1200 | 5920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP54D-RC | 3595 | CG6477-RC | 334..1518 | 16..1200 | 5925 | 100 | Plus |
RhoGAP54D-RA | 3791 | CG6477-RA | 530..1714 | 16..1200 | 5925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17588961..17589854 | 1292..399 | 4470 | 100 | Minus |
2R | 25286936 | 2R | 17589908..17590140 | 398..166 | 1165 | 100 | Minus |
2R | 25286936 | 2R | 17590206..17590355 | 165..16 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:28 has no hits.
BS16643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:41 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RB | 1..1275 | 17..1291 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:51 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RB | 521..1806 | 9..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:00 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 531..1714 | 17..1200 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:41 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RB | 521..1806 | 9..1297 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:35 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP54D-RA | 531..1714 | 17..1200 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:35 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17588963..17589854 | 399..1290 | 100 | <- | Minus |
2R | 17589908..17590140 | 166..398 | 100 | <- | Minus |
2R | 17590206..17590354 | 17..165 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:00 Download gff for
BS16643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13476468..13477359 | 399..1290 | 100 | <- | Minus |
arm_2R | 13477413..13477645 | 166..398 | 100 | <- | Minus |
arm_2R | 13477711..13477859 | 17..165 | 100 | | Minus |
BS16643.pep Sequence
Translation from 16 to 1290
> BS16643.pep
MEATMDTDHANLNDFRDRDLATRMRRCNYEKYKSLVRMHLSFELELNTDE
FDLPCHEIVYEDKGKLKKWNRLSKKHRLGHGAAATSCAAGSASKSVGNSP
TETLQQQIDPGFLMHLQELKEFLMLEKNLTQEGLFRKAGAVSRQNELRMH
IQHDKPLNLELAGFSAHDCATVFKGFLSELPEPLLTDAHYPAHLQIAPLC
QALNGQTTATAERQQHLLNSVQLLLLLLPEEHRELLQHIIEMLHAVAKHE
KSNKMSADNLATLFTPHLICPRQLPPEVLHYQAKKMSSIVTYMIVRGLDI
FEVPGKLSTDIRAYFLERKRKKTMSPEQTLDESISDVSTVNTVYTFVDRA
ATAAATNTNNTDTELAQLYAHIQSMPESSKKRRLIKQFNKQNGQGKLLYI
FNALMPFHSGSYDLNTSASNFKIT*
BS16643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP54D-PC | 1004 | CG6477-PC | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP54D-PA | 1004 | CG6477-PA | 1..400 | 1..400 | 2042 | 99 | Plus |
RhoGAP92B-PC | 543 | CG4755-PC | 67..311 | 113..360 | 182 | 27.7 | Plus |
RhoGAP92B-PD | 648 | CG4755-PD | 172..416 | 113..360 | 182 | 27.7 | Plus |
conu-PI | 629 | CG17082-PI | 390..583 | 124..319 | 160 | 24.2 | Plus |