Clone Sequence Records
BS16653.3prime Sequence
873 bp (831 high quality bases) assembled on 2007-05-15
> BS16653.3prime
ATGGTCTAGAAAGCTTTCAGTACAAATTAAATATTTCCAAATTTACATAA
TCGCGGTTAGCCATGACAAAAGCCTTGTGCGCATTGACTTGAATGGCCAG
ATCCACGATATTCGTATTGCTAAAGTAGTCCATGGCAACCACATTGGCAT
TATAGCCCCAAGGTCCTTTTAGCCACTTATTTATCTTGGGATTCAGCACC
GCCGCCCGCTCCTTGGCGGTCTGCAATTGGTGGGCGTTCAGTGTCTGCTC
CATGCTCCTCACCGCCGTGAATATCCATCCAACATTCCGAACTGGAGAAT
CCGGCTTCCTGCTGAACAACAGACGCATATAGTCCAGAGTTTGAGAAATA
TTCATAAAGCTGGTGCTAAAACGCTGCCACGGCGGGCAGAGCATGTTCGA
TTCTCTGTCCGGATAGGGCAGCTCCTGCGTGGGAAATAATATCACCAGAT
GCCTCTTTTGAAGCAGTATTTCGCTGAAATTTCGATTCGCACAGTTTTCG
TCCTTGCCCACATTACGCCGATAGGTCTCATCGCCCAGCTCCTGGCGAAT
TAGCCGGAATAGCGAGCTGTAGATCTCTGGATGCTTGTAAAAGCCGATGG
GAAAACTACTAAAATCCAGGACTACCACTTCGCCAGATCTTTTAACAAAC
TGACGAACATCACGTAGAACTGTGAGTAGCGGTGTAATCAGCATATTCTC
GTTGGCTATCCAGAAATTATCGGCATCATTCTCGGTGTTCATGTTCTTGT
ATCCAATGCTTAAATCGAGATAACGTATGCCAAAGACTAGCTGCGACCAA
ACATCGAGCTGCTGGGCCACCAGGTAATCCCTGAACAGTATCGAATTGGA
CTTACTGGAGCTGCCCCAGACGG
BS16653.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 1362 | CG5895-RA | 506..1362 | 873..17 | 4235 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RC | 1415 | CG5895-RC | 494..1351 | 873..16 | 4260 | 99.8 | Minus |
CG5895-RA | 1512 | CG5895-RA | 591..1448 | 873..16 | 4260 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16036775..16037163 | 404..16 | 1945 | 100 | Minus |
3L | 28110227 | 3L | 16036351..16036701 | 753..403 | 1755 | 100 | Minus |
3L | 28110227 | 3L | 16036171..16036291 | 873..753 | 575 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:55:16 has no hits.
BS16653.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:46 Download gff for
BS16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-PA | 506..1362 | 17..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:58 Download gff for
BS16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 591..1450 | 11..873 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:42 Download gff for
BS16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 591..1450 | 11..873 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:42 Download gff for
BS16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16036171..16036291 | 753..873 | 98 | -> | Minus |
3L | 16036352..16036701 | 403..752 | 100 | -> | Minus |
3L | 16036777..16037165 | 11..402 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:58 Download gff for
BS16653.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16029271..16029391 | 753..873 | 98 | -> | Minus |
arm_3L | 16029452..16029801 | 403..752 | 100 | -> | Minus |
arm_3L | 16029877..16030265 | 11..402 | 99 | | Minus |
BS16653.5prime Sequence
900 bp (813 high quality bases) assembled on 2007-05-15
> BS16653.5prime
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA
BS16653.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 1362 | CG5895-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1512 | CG5895-RA | 86..969 | 17..900 | 4420 | 100 | Plus |
CG5895-RC | 1415 | CG5895-RC | 54..872 | 82..900 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16035731..16036291 | 82..642 | 2805 | 100 | Plus |
3L | 28110227 | 3L | 16036351..16036609 | 642..900 | 1295 | 100 | Plus |
3L | 28110227 | 3L | 16035570..16035636 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:38:25 has no hits.
BS16653.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:50 Download gff for
BS16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-PA | 1..880 | 17..896 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:58 Download gff for
BS16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 83..965 | 14..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:29 Download gff for
BS16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 83..965 | 14..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:29 Download gff for
BS16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16035567..16035636 | 14..83 | 98 | -> | Plus |
3L | 16035733..16036291 | 84..642 | 100 | -> | Plus |
3L | 16036352..16036605 | 643..896 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:58 Download gff for
BS16653.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16028667..16028736 | 14..83 | 98 | -> | Plus |
arm_3L | 16028833..16029391 | 84..642 | 100 | -> | Plus |
arm_3L | 16029452..16029705 | 643..896 | 100 | | Plus |
BS16653.complete Sequence
1394 bp assembled on 2007-05-07
GenBank Submission: FJ638171
> BS16653.complete
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA
CTGTGCGAATCGAAATTTCAGCGAAATACTGCTTCAAAAGAGGCATCTGG
TGATATTATTTCCCACGCAGGAGCTGCCCTATCCGGACAGAGAATCGAAC
ATGCTCTGCCCGCCGTGGCAGCGTTTTAGCACCAGCTTTATGAATATTTC
TCAAACTCTGGACTATATGCGTCTGTTGTTCAGCAGGAAGCCGGATTCTC
CAGTTCGGAATGTTGGATGGATATTCACGGCGGTGAGGAGCATGGAGCAG
ACACTGAACGCCCACCAATTGCAGACCGCCAAGGAGCGGGCGGCGGTGCT
GAATCCCAAGATAAATAAGTGGCTAAAAGGACCTTGGGGCTATAATGCCA
ATGTGGTTGCCATGGACTACTTTAGCAATACGAATATCGTGGATCTGGCC
ATTCAAGTCAATGCGCACAAGGCTTTTGTCATGGCTAACCGCGATTATGT
AAATTTGGAAATATTTAATTTGTACTGAAAGCTTTCTAGACCAT
BS16653.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1362 | CG5895-PA | 1..1362 | 17..1378 | 6810 | 100 | Plus |
CG5895-RC | 1107 | CG5895-PC | 1..1107 | 272..1378 | 5535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-RA | 1512 | CG5895-RA | 86..1448 | 17..1379 | 6815 | 100 | Plus |
CG5895-RC | 1415 | CG5895-RC | 54..1351 | 82..1379 | 6490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16035731..16036291 | 82..642 | 2805 | 100 | Plus |
3L | 28110227 | 3L | 16036775..16037163 | 991..1379 | 1945 | 100 | Plus |
3L | 28110227 | 3L | 16036351..16036701 | 642..992 | 1755 | 100 | Plus |
3L | 28110227 | 3L | 16035570..16035636 | 17..83 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:49:07 has no hits.
BS16653.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:16 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 1..1362 | 17..1378 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:23 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 81..1448 | 14..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:08 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 86..1446 | 17..1377 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:16 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 81..1448 | 14..1384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:36 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5895-RA | 86..1446 | 17..1377 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:36 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16035570..16035636 | 17..83 | 100 | -> | Plus |
3L | 16035733..16036291 | 84..642 | 100 | -> | Plus |
3L | 16036352..16036701 | 643..992 | 100 | -> | Plus |
3L | 16036777..16037161 | 993..1377 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:08 Download gff for
BS16653.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16028670..16028736 | 17..83 | 100 | -> | Plus |
arm_3L | 16028833..16029391 | 84..642 | 100 | -> | Plus |
arm_3L | 16029452..16029801 | 643..992 | 100 | -> | Plus |
arm_3L | 16029877..16030261 | 993..1377 | 100 | | Plus |
BS16653.pep Sequence
Translation from 16 to 1377
> BS16653.pep
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLY*
BS16653.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5895-PA | 453 | CG5895-PA | 1..453 | 1..453 | 2392 | 100 | Plus |
CG5895-PC | 368 | CG5895-PC | 1..368 | 86..453 | 1940 | 100 | Plus |
CG14945-PA | 482 | CG14945-PA | 185..482 | 132..438 | 270 | 26 | Plus |
CG14945-PB | 482 | CG14945-PB | 185..482 | 132..438 | 270 | 26 | Plus |