Clone BS16653 Report

Search the DGRC for BS16653

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG5895-RA
Protein status:BS16653.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16653.3prime Sequence

873 bp (831 high quality bases) assembled on 2007-05-15

> BS16653.3prime
ATGGTCTAGAAAGCTTTCAGTACAAATTAAATATTTCCAAATTTACATAA
TCGCGGTTAGCCATGACAAAAGCCTTGTGCGCATTGACTTGAATGGCCAG
ATCCACGATATTCGTATTGCTAAAGTAGTCCATGGCAACCACATTGGCAT
TATAGCCCCAAGGTCCTTTTAGCCACTTATTTATCTTGGGATTCAGCACC
GCCGCCCGCTCCTTGGCGGTCTGCAATTGGTGGGCGTTCAGTGTCTGCTC
CATGCTCCTCACCGCCGTGAATATCCATCCAACATTCCGAACTGGAGAAT
CCGGCTTCCTGCTGAACAACAGACGCATATAGTCCAGAGTTTGAGAAATA
TTCATAAAGCTGGTGCTAAAACGCTGCCACGGCGGGCAGAGCATGTTCGA
TTCTCTGTCCGGATAGGGCAGCTCCTGCGTGGGAAATAATATCACCAGAT
GCCTCTTTTGAAGCAGTATTTCGCTGAAATTTCGATTCGCACAGTTTTCG
TCCTTGCCCACATTACGCCGATAGGTCTCATCGCCCAGCTCCTGGCGAAT
TAGCCGGAATAGCGAGCTGTAGATCTCTGGATGCTTGTAAAAGCCGATGG
GAAAACTACTAAAATCCAGGACTACCACTTCGCCAGATCTTTTAACAAAC
TGACGAACATCACGTAGAACTGTGAGTAGCGGTGTAATCAGCATATTCTC
GTTGGCTATCCAGAAATTATCGGCATCATTCTCGGTGTTCATGTTCTTGT
ATCCAATGCTTAAATCGAGATAACGTATGCCAAAGACTAGCTGCGACCAA
ACATCGAGCTGCTGGGCCACCAGGTAATCCCTGAACAGTATCGAATTGGA
CTTACTGGAGCTGCCCCAGACGG

BS16653.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 1362 CG5895-RA 506..1362 873..17 4235 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RC 1415 CG5895-RC 494..1351 873..16 4260 99.8 Minus
CG5895-RA 1512 CG5895-RA 591..1448 873..16 4260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16036775..16037163 404..16 1945 100 Minus
3L 28110227 3L 16036351..16036701 753..403 1755 100 Minus
3L 28110227 3L 16036171..16036291 873..753 575 98.3 Minus
Blast to na_te.dros performed on 2015-02-13 11:55:16 has no hits.

BS16653.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:46 Download gff for BS16653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-PA 506..1362 17..873 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:58 Download gff for BS16653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 591..1450 11..873 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:42 Download gff for BS16653.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 591..1450 11..873 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:42 Download gff for BS16653.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16036171..16036291 753..873 98 -> Minus
3L 16036352..16036701 403..752 100 -> Minus
3L 16036777..16037165 11..402 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:58 Download gff for BS16653.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16029271..16029391 753..873 98 -> Minus
arm_3L 16029452..16029801 403..752 100 -> Minus
arm_3L 16029877..16030265 11..402 99   Minus

BS16653.5prime Sequence

900 bp (813 high quality bases) assembled on 2007-05-15

> BS16653.5prime
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA

BS16653.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 1362 CG5895-RA 1..884 17..900 4420 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1512 CG5895-RA 86..969 17..900 4420 100 Plus
CG5895-RC 1415 CG5895-RC 54..872 82..900 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16035731..16036291 82..642 2805 100 Plus
3L 28110227 3L 16036351..16036609 642..900 1295 100 Plus
3L 28110227 3L 16035570..16035636 17..83 335 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:38:25 has no hits.

BS16653.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:50 Download gff for BS16653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-PA 1..880 17..896 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:58 Download gff for BS16653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 83..965 14..896 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:29 Download gff for BS16653.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 83..965 14..896 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:29 Download gff for BS16653.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16035567..16035636 14..83 98 -> Plus
3L 16035733..16036291 84..642 100 -> Plus
3L 16036352..16036605 643..896 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:58 Download gff for BS16653.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16028667..16028736 14..83 98 -> Plus
arm_3L 16028833..16029391 84..642 100 -> Plus
arm_3L 16029452..16029705 643..896 100   Plus

BS16653.complete Sequence

1394 bp assembled on 2007-05-07

GenBank Submission: FJ638171

> BS16653.complete
GAAGTTATCAGTCGACATGATAAAAGCGTATATAATTTTGGTGCCTTTGC
TGCAGTCAATTCTTTTGATTGGCTCCCTTGAAGCGGGCTGTCCTGTTTAC
CTAACCATTTCGCTGACGGGCAAAACCCTGCAGGACACCTTTCTCGAGAT
CAACTGGGGCCCGAACTGCTATGGACCACCCGAGTGGGTGGGTATCTACA
GCCAGGATCCGGCCATCTCCAACTTTCAGCCAGATCTGCGCATCAATGGT
ATTTTCAATATAACCGGCAAAATGCAGACGCCCATCAAGCTGGGCAAGCT
TCGTTTTCCCGGTGGCTGGAACAAAAAAGATAGTAGCGATCAGCCGGCAA
CGCAATATCTCAAGGGCAAGTGCCTGCCACACTATGTGGCCAGCTACAAT
GGCACCGAGCTGCTCACGGTGGATTGCCTTAAGATACAGCCCAATTGGAT
GGGCCAGATCAAGGACATCAATCGAATGGCGCTGAAGGATATCTTCCTGC
CCGGCACACATGCCTCGGCGGCCGTCTTGGGCAGCTCCAGTAAGTCCAAT
TCGATACTGGTCAGGGATTACCTGGTGGCCCAGCAGCTCGATGTTTGGTC
GCAGCTAGTCTTTGGCATACGTTATCTCGATTTAAGCATTGGATACAAGA
ACATGAACACCGAGAATGATGCCGATAATTTCTGGATAGCCAACGAGAAT
ATGCTGATTACACCGCTACTCACAGTTCTACGTGATGTTCGTCAGTTTGT
TAAAAGATCTGGCGAAGTGGTAGTCCTGGATTTTAGTAGTTTTCCCATCG
GCTTTTACAAGCATCCAGAGATCTACAGCTCGCTATTCCGGCTAATTCGC
CAGGAGCTGGGCGATGAGACCTATCGGCGTAATGTGGGCAAGGACGAAAA
CTGTGCGAATCGAAATTTCAGCGAAATACTGCTTCAAAAGAGGCATCTGG
TGATATTATTTCCCACGCAGGAGCTGCCCTATCCGGACAGAGAATCGAAC
ATGCTCTGCCCGCCGTGGCAGCGTTTTAGCACCAGCTTTATGAATATTTC
TCAAACTCTGGACTATATGCGTCTGTTGTTCAGCAGGAAGCCGGATTCTC
CAGTTCGGAATGTTGGATGGATATTCACGGCGGTGAGGAGCATGGAGCAG
ACACTGAACGCCCACCAATTGCAGACCGCCAAGGAGCGGGCGGCGGTGCT
GAATCCCAAGATAAATAAGTGGCTAAAAGGACCTTGGGGCTATAATGCCA
ATGTGGTTGCCATGGACTACTTTAGCAATACGAATATCGTGGATCTGGCC
ATTCAAGTCAATGCGCACAAGGCTTTTGTCATGGCTAACCGCGATTATGT
AAATTTGGAAATATTTAATTTGTACTGAAAGCTTTCTAGACCAT

BS16653.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1362 CG5895-PA 1..1362 17..1378 6810 100 Plus
CG5895-RC 1107 CG5895-PC 1..1107 272..1378 5535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-RA 1512 CG5895-RA 86..1448 17..1379 6815 100 Plus
CG5895-RC 1415 CG5895-RC 54..1351 82..1379 6490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16035731..16036291 82..642 2805 100 Plus
3L 28110227 3L 16036775..16037163 991..1379 1945 100 Plus
3L 28110227 3L 16036351..16036701 642..992 1755 100 Plus
3L 28110227 3L 16035570..16035636 17..83 335 100 Plus
Blast to na_te.dros performed on 2014-11-27 00:49:07 has no hits.

BS16653.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:16 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 1..1362 17..1378 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:23 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 81..1448 14..1384 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:35:08 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 86..1446 17..1377 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:16 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 81..1448 14..1384 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:10:36 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
CG5895-RA 86..1446 17..1377 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:10:36 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16035570..16035636 17..83 100 -> Plus
3L 16035733..16036291 84..642 100 -> Plus
3L 16036352..16036701 643..992 100 -> Plus
3L 16036777..16037161 993..1377 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:35:08 Download gff for BS16653.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16028670..16028736 17..83 100 -> Plus
arm_3L 16028833..16029391 84..642 100 -> Plus
arm_3L 16029452..16029801 643..992 100 -> Plus
arm_3L 16029877..16030261 993..1377 100   Plus

BS16653.pep Sequence

Translation from 16 to 1377

> BS16653.pep
MIKAYIILVPLLQSILLIGSLEAGCPVYLTISLTGKTLQDTFLEINWGPN
CYGPPEWVGIYSQDPAISNFQPDLRINGIFNITGKMQTPIKLGKLRFPGG
WNKKDSSDQPATQYLKGKCLPHYVASYNGTELLTVDCLKIQPNWMGQIKD
INRMALKDIFLPGTHASAAVLGSSSKSNSILVRDYLVAQQLDVWSQLVFG
IRYLDLSIGYKNMNTENDADNFWIANENMLITPLLTVLRDVRQFVKRSGE
VVVLDFSSFPIGFYKHPEIYSSLFRLIRQELGDETYRRNVGKDENCANRN
FSEILLQKRHLVILFPTQELPYPDRESNMLCPPWQRFSTSFMNISQTLDY
MRLLFSRKPDSPVRNVGWIFTAVRSMEQTLNAHQLQTAKERAAVLNPKIN
KWLKGPWGYNANVVAMDYFSNTNIVDLAIQVNAHKAFVMANRDYVNLEIF
NLY*

BS16653.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5895-PA 453 CG5895-PA 1..453 1..453 2392 100 Plus
CG5895-PC 368 CG5895-PC 1..368 86..453 1940 100 Plus
CG14945-PA 482 CG14945-PA 185..482 132..438 270 26 Plus
CG14945-PB 482 CG14945-PB 185..482 132..438 270 26 Plus