Clone Sequence Records
BS16654.5prime Sequence
489 bp (489 high quality bases) assembled on 2007-05-15
> BS16654.5prime
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACC
BS16654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1742-PA | 459 | Mgstl-RA | 1..459 | 17..475 | 2295 | 100 | Plus |
| CG32510-PA | 387 | CG32510-RA | 7..335 | 475..147 | 1645 | 100 | Minus |
| CG1742-PB | 456 | Mgstl-RB | 130..456 | 149..475 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 660 | CG1742-RA | 101..559 | 17..475 | 2295 | 100 | Plus |
| Mgstl-RC | 951 | CG1742-RC | 524..850 | 149..475 | 1635 | 100 | Plus |
| Mgstl-RB | 591 | CG1742-RB | 164..490 | 149..475 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22226213..22226671 | 17..475 | 2055 | 96.5 | Plus |
| X | 23542271 | X | 21043678..21044006 | 147..475 | 1645 | 100 | Plus |
| X | 23542271 | X | 21043170..21043301 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:19:57 has no hits.
BS16654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:54 Download gff for
BS16654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1742-PA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:09 Download gff for
BS16654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 9..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:44:21 Download gff for
BS16654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 9..479 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:44:21 Download gff for
BS16654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22226207..22226673 | 9..479 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:09 Download gff for
BS16654.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22226207..22226673 | 9..479 | 95 | | Plus |
BS16654.3prime Sequence
489 bp (489 high quality bases) assembled on 2007-05-15
> BS16654.3prime
ATGGTCTAGAAAGCTTTCAGAAGGCGGCCGAGGCGATGACCTGCAGGGCC
ATGTAGACGGTGGCGCCCAAGGCCACGAAGAAGGCGAGGGCACGGGAAGG
CTGGGGCACCACGACCACGGCGTAGACCAGTGTGTGGACGATGCGGGCGA
TGCCCACGGCGCGGAACAGGTTGATGGCCAGAAAGGCGGCCGGATCAGTC
AGGACGTAGAGCAGACCGATGGCGAAGAAGGGCAGGATGTTCTCCAGGTC
GTTGCGGTGGGCACGGCGCACACGCTCCACGTTCGGATCGTCGAACTTGA
CCTTCAGCTTGGGGGACATCAGGTCCTCGGGGTTGGCGAAGGTCTTCGTC
TTGAAACGCTGGATGGCTGTCAGAAGGCTCATCAGCAGCATTTTGATCAC
CAAAACTCCGACCCAAAAGGTGAAACTCTTGAAGACGGGATTGGAGAGGC
TTAGCAGTTCCACGGGGCTGGCCATGTCGACTGATAACT
BS16654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1742-PA | 459 | Mgstl-RA | 1..459 | 475..17 | 2295 | 100 | Minus |
| CG32510-PA | 387 | CG32510-RA | 7..335 | 17..345 | 1645 | 100 | Plus |
| CG1742-PB | 456 | Mgstl-RB | 130..456 | 343..17 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 660 | CG1742-RA | 101..559 | 475..17 | 2295 | 100 | Minus |
| Mgstl-RC | 951 | CG1742-RC | 524..850 | 343..17 | 1635 | 100 | Minus |
| Mgstl-RB | 591 | CG1742-RB | 164..490 | 343..17 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:03:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22226213..22226671 | 475..17 | 2055 | 96.5 | Minus |
| X | 23542271 | X | 21043678..21044006 | 345..17 | 1645 | 100 | Minus |
| X | 23542271 | X | 21043170..21043301 | 475..344 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:03:18 has no hits.
BS16654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:54 Download gff for
BS16654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1742-PA | 1..459 | 17..475 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:41 Download gff for
BS16654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 13..483 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:32:09 Download gff for
BS16654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 95..561 | 13..483 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:32:09 Download gff for
BS16654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22226207..22226674 | 13..483 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:41 Download gff for
BS16654.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22226207..22226674 | 13..483 | 95 | <- | Minus |
BS16654.complete Sequence
491 bp assembled on 2007-05-07
GenBank Submission: FJ638172
> BS16654.complete
GAAGTTATCAGTCGACATGGCCAGCCCCGTGGAACTGCTAAGCCTCTCCA
ATCCCGTCTTCAAGAGTTTCACCTTTTGGGTCGGAGTTTTGGTGATCAAA
ATGCTGCTGATGAGCCTTCTGACAGCCATCCAGCGTTTCAAGACGAAGAC
CTTCGCCAACCCCGAGGACCTGATGTCCCCCAAGCTGAAGGTCAAGTTCG
ACGATCCGAACGTGGAGCGTGTGCGCCGTGCCCACCGCAACGACCTGGAG
AACATCCTGCCCTTCTTCGCCATCGGTCTGCTCTACGTCCTGACTGATCC
GGCCGCCTTTCTGGCCATCAACCTGTTCCGCGCCGTGGGCATCGCCCGCA
TCGTCCACACACTGGTCTACGCCGTGGTCGTGGTGCCCCAGCCTTCCCGT
GCCCTCGCCTTCTTCGTGGCCTTGGGCGCCACCGTCTACATGGCCCTGCA
GGTCATCGCCTCGGCCGCCTTCTGAAAGCTTTCTAGACCAT
BS16654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:47:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 459 | CG1742-PA | 1..459 | 17..475 | 2295 | 100 | Plus |
| Mgstl-RC | 456 | CG1742-PC | 130..456 | 149..475 | 1635 | 100 | Plus |
| Mgstl-RB | 456 | CG1742-PB | 130..456 | 149..475 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:47:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-RA | 660 | CG1742-RA | 101..559 | 17..475 | 2295 | 100 | Plus |
| Mgstl-RC | 951 | CG1742-RC | 524..850 | 149..475 | 1635 | 100 | Plus |
| Mgstl-RB | 591 | CG1742-RB | 164..490 | 149..475 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:47:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22226213..22226671 | 17..475 | 2055 | 96.5 | Plus |
| X | 23542271 | X | 21043678..21044006 | 147..475 | 1645 | 100 | Plus |
| X | 23542271 | X | 21043170..21043301 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:47:54 has no hits.
BS16654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:33:35 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 1..459 | 17..475 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:39 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 99..556 | 17..474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:11 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 101..558 | 17..474 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:33:35 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 93..559 | 9..479 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:07 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgstl-RA | 101..558 | 17..474 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:07 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22226213..22226670 | 17..474 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:11 Download gff for
BS16654.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22226213..22226670 | 17..474 | 96 | | Plus |
BS16654.pep Sequence
Translation from 16 to 474
> BS16654.pep
MASPVELLSLSNPVFKSFTFWVGVLVIKMLLMSLLTAIQRFKTKTFANPE
DLMSPKLKVKFDDPNVERVRRAHRNDLENILPFFAIGLLYVLTDPAAFLA
INLFRAVGIARIVHTLVYAVVVVPQPSRALAFFVALGATVYMALQVIASA
AF*
BS16654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgstl-PA | 152 | CG1742-PA | 1..152 | 1..152 | 749 | 100 | Plus |
| Mgstl-PC | 151 | CG1742-PC | 5..151 | 6..152 | 614 | 83 | Plus |
| Mgstl-PB | 151 | CG1742-PB | 5..151 | 6..152 | 614 | 83 | Plus |
| CG33178-PC | 165 | CG33178-PC | 12..157 | 1..146 | 446 | 61 | Plus |
| CG33178-PA | 165 | CG33178-PA | 12..157 | 1..146 | 446 | 61 | Plus |
