Clone Sequence Records
BS16655.3prime Sequence
882 bp (779 high quality bases) assembled on 2007-05-15
> BS16655.3prime
ATGGTCTAGAAAGCTTTTAAATGTATTGAGGTACAAGTGGACTAGAATGG
TTCCCTACCCATCCCATTGCTTCGCCCAATTTCTTCAGCAATTTGGCAGC
TCGACGGTCGGGATTTAGGGAATTCACCCACGCAATCAAGTCAAGCAACC
GTTTGATGCCAATGGAGACGTTGCGGCCATCCATGGCGATCTCGATTTGG
CGTAGCTCCTCGGGCTCGAATCGTTTTGAAGCTTCCACTATGACCATAAG
TTCTTTAGGCGTGGAAACATTTGGCACATTGTGAACTGAAGTGAAAACGG
ATAGCAAGCCCAGTTCCTCCAGGACATCGAGACGATTGCTTGTGCAAATG
ATGATGAGCTCGTGGCTGTTGGGCGGTTGTTTCTTCAGAAGAACCGTCAG
CTTCTGCAGGAACTCCTTGGAGTACCGCTTACCCAGGGCGCCGTAACCAA
TGACACGCTCAAAGTCGTCAATGATGACGCAGCTGCGCCTGGAAACATAG
GCGTCCTCCAAGACTTCCCGTATTCTCTGGCATTTTTCGGAATCGCTAAG
TCCCAGCAATTCGGCCGACGAGATGTATTTTATAAAAGGGCAGTCTGTTT
TCAAAGCCATTTGAGCGGCCACCGTAGTTAGGCCTGACTTGGGCTTACCT
TCGACCAGATGGCAAGACCATCTTGGGCGTCCGGTGGACAGGAGATCATT
CGGATCGAAAGCGGTACGATCTAGATATTCATATGGCATGAGCAGCTGGA
GAGTCTCCTCCTGCCGGCCAAATCGTGGCTGAATGATCTTTACCGCGGCC
AGGAGATCGACCTGAGTGACTTGAAGGCCCTTCGGGCATCTGGTGACGTG
AGTGCGGACAATGGCTTCATGGAGGGCTTCTC
BS16655.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-PA | 1026 | CG31495-RA | 161..1026 | 882..17 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-RB | 1500 | CG31495-RB | 296..1161 | 882..17 | 4330 | 100 | Minus |
| CG31495-RA | 1695 | CG31495-RA | 296..1161 | 882..17 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13838774..13839639 | 17..882 | 4330 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:29 has no hits.
BS16655.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:00 Download gff for
BS16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-PA | 161..1026 | 17..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:56 Download gff for
BS16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 292..1165 | 6..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:37 Download gff for
BS16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 296..1169 | 6..882 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:37 Download gff for
BS16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13838766..13839639 | 6..882 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:56 Download gff for
BS16655.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9664488..9665361 | 6..882 | 99 | | Plus |
BS16655.5prime Sequence
829 bp (818 high quality bases) assembled on 2007-05-15
> BS16655.5prime
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCAAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCT
BS16655.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-PA | 1026 | CG31495-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:42:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-RB | 1500 | CG31495-RB | 136..948 | 17..829 | 4065 | 100 | Plus |
| CG31495-RA | 1695 | CG31495-RA | 136..948 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:42:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13838987..13839799 | 829..17 | 4065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:42:32 has no hits.
BS16655.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:46 Download gff for
BS16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-PA | 1..813 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:48:12 Download gff for
BS16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..944 | 17..829 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:14:11 Download gff for
BS16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 136..948 | 17..829 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:14:11 Download gff for
BS16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13838987..13839799 | 17..829 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:48:12 Download gff for
BS16655.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9664709..9665521 | 17..829 | 100 | | Minus |
BS16655.complete Sequence
1058 bp assembled on 2007-05-07
GenBank Submission: FJ638173
> BS16655.complete
GAAGTTATCAGTCGACATGGTCAACATCACTTTACCCAACACTGAGGAGC
GTGTGAACCTCTTAAAATCGCGCATCAACAGGCTGGGTGACATTACGGTG
GCCGGCGATGTTTGCGCACGCGAAATTGCAATGAAAACCAAAAATTTCAC
GGAGGACGAGCTGTGCCAACTGGTCCGAGAAGCCCTCCATGAAGCCATTG
TCCGCACTCACGTCACCAGATGCCCGAAGGGCCTTCAAGTCACTCAGGTC
GATCTCCTGGCCGCGGTAAAGATCATTCAGCCACGATTTGGCCGGCAGGA
GGAGACTCTCCAGCTGCTCATGCCATATGAATATCTAGATCGTACCGCTT
TCGATCCGAATGATCTCCTGTCCACCGGACGCCCAAGATGGTCTTGCCAT
CTGGTCGAAGGTAAGCCCAAGTCAGGCCTAACTACGGTGGCCGCTCAAAT
GGCTTTGAAAACAGACTGCCCTTTTATAAAATACATCTCGTCGGCCGAAT
TGCTGGGACTTAGCGATTCCGAAAAATGCCAGAGAATACGGGAAGTCTTG
GAGGACGCCTATGTTTCCAGGCGCAGCTGCGTCATCATTGACGACTTTGA
GCGTGTCATTGGTTACGGCGCCCTGGGTAAGCGGTACTCCAAGGAGTTCC
TGCAGAAGCTGACGGTTCTTCTGAAGAAACAACCGCCCAACAGCCACGAG
CTCATCATCATTTGCACAAGCAATCGTCTCGATGTCCTGGAGGAACTGGG
CTTGCTATCCGTTTTCACTTCAGTTCACAATGTGCCAAATGTTTCCACGC
CTAAAGAACTTATGGTCATAGTGGAAGCTTCAAAACGATTCGAGCCCGAG
GAGCTACGCCAAATCGAGATCGCCATGGATGGCCGCAACGTCTCCATTGG
CATCAAACGGTTGCTTGACTTGATTGCGTGGGTGAATTCCCTAAATCCCG
ACCGTCGAGCTGCCAAATTGCTGAAGAAATTGGGCGAAGCAATGGGATGG
GTAGGGAACCATTCTAGTCCACTTGTACCTCAATACATTTAAAAGCTTTC
TAGACCAT
BS16655.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:27:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-RB | 1026 | CG31495-PB | 1..1026 | 17..1042 | 5130 | 100 | Plus |
| CG31495-RA | 1026 | CG31495-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-RB | 1500 | CG31495-RB | 136..1161 | 17..1042 | 5130 | 100 | Plus |
| CG31495-RA | 1695 | CG31495-RA | 136..1161 | 17..1042 | 5130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13838774..13839799 | 1042..17 | 5130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:27:16 has no hits.
BS16655.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:17 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 1..1026 | 17..1042 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:25 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..1165 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:44:31 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..1155 | 17..1040 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:17 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 132..1165 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:42 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31495-RA | 136..1159 | 17..1040 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:42 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13838776..13839799 | 17..1040 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:44:31 Download gff for
BS16655.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9664498..9665521 | 17..1040 | 100 | | Minus |
BS16655.pep Sequence
Translation from 16 to 1041
> BS16655.pep
MVNITLPNTEERVNLLKSRINRLGDITVAGDVCAREIAMKTKNFTEDELC
QLVREALHEAIVRTHVTRCPKGLQVTQVDLLAAVKIIQPRFGRQEETLQL
LMPYEYLDRTAFDPNDLLSTGRPRWSCHLVEGKPKSGLTTVAAQMALKTD
CPFIKYISSAELLGLSDSEKCQRIREVLEDAYVSRRSCVIIDDFERVIGY
GALGKRYSKEFLQKLTVLLKKQPPNSHELIIICTSNRLDVLEELGLLSVF
TSVHNVPNVSTPKELMVIVEASKRFEPEELRQIEIAMDGRNVSIGIKRLL
DLIAWVNSLNPDRRAAKLLKKLGEAMGWVGNHSSPLVPQYI*
BS16655.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31495-PB | 341 | CG31495-PB | 1..341 | 1..341 | 1738 | 100 | Plus |
| CG31495-PA | 341 | CG31495-PA | 1..341 | 1..341 | 1738 | 100 | Plus |
| Nsf2-PC | 752 | CG33101-PC | 398..743 | 2..327 | 573 | 39.9 | Plus |
| Nsf2-PB | 752 | CG33101-PB | 398..743 | 2..327 | 573 | 39.9 | Plus |
| Nsf2-PA | 752 | CG33101-PA | 398..743 | 2..327 | 573 | 39.9 | Plus |
