Clone BS16657 Report

Search the DGRC for BS16657

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:57
Vector:pDNR-Dual
Associated Gene/Transcripttara-RA
Protein status:BS16657.pep: full length peptide match
Sequenced Size:2783

Clone Sequence Records

BS16657.complete Sequence

2783 bp assembled on 2009-12-07

GenBank Submission: KX803734

> BS16657.complete
GAAGTTATCAGTCGACATGAAAATGTGGACGGAATCCAATGTGAATTCCG
CGATGGGTCTTCAAGCAACAGCCGCCACCAAGCGGAAGCATGAGCTGACC
TTCGACAGCAAGGATGCCAACACCACCTACACGGGCAACTGTGCCCCGCC
CCCCGTCAAGGCCAACAAGTGGGCCATCAGCAACAACAACTACCTGGAGT
CGCTCGAGGAGCAGCAGCAGCAACAGCAATCGCCATCGGAGCCAGCTGTT
GAGTCCAACAACAACCACATTGTTTTAGAAGCATCAATGGATGCGTTGAA
GCCAACGGAGCCAAGTATTAGCAATGGTCATGAAGTTACTACCGCCGTCG
CAGCAATGAAAAGTCAAGCGGAGGTGCCACTCCCGCCAACAGCGAGTGCG
GCGATACCGGAGGACAGTATCGCCAGGTTAGAGGTGGTCACCTCAGCCGT
TCCTTGTGAGCCCTGGACGAGCAATGGGCCCACTACTCCTTCCGCGGTGG
CAGGACCCGCAGCATCCGCGGAACCTGTGGATTGCATCTCCAAGCTGCAG
GCCGTCGCGGTGCCCAGTGATCCTTGGGGTAGCATTGCCACCCGCTCCAC
TCTGGCAACGACTTTGCTCAGTGCCGATGAGCTGGACGACGATGATGATG
ATTTTGAGGACGACTACGAGGAGGAGGAGAGCATCATACCCACCTACTGT
CCCATGCGCTATCATCCCTTTGTACCGCATCCGCACCCTCATTCGCACCA
GCTGCCGTCCCATCCCCACCAGCAGCAGCCGCAGCAGCTCTCCCAACAAC
AACCACATCCCCAGCAGCAGCAACTCGCCCAGCAGCAGCAACAACATCCG
CAGCAGCAGCGAAGCTATGCCCCCGGATATGGGAGCAGGCAACCCAACTA
CTATTCGGAGCCTTTCCCGCAGCAGAATTGCTCGCGGACAGGAGGACCGC
AGCACATGACGCAATCACCGCCAACACCGCAGCAGGCGCGTGGTTTCGCT
CCACCCCAGTGGGCGACAGCGGGTAGCAGTCCGGCCAATCCCTCATCGGG
AGCCCAACAGTTCTACGAGCCGACCAACGGTGGAGCTTATGCCCCGCCAG
CGGCGCCCCAGCAGACAATTCGTTGTGCAGAGAACGGCAAATCCTATCTG
GACCTGGGCTGCAGCAGTGGCGCATCCGGAAATGCTGGAGGATCGCCCAT
CAGTCCGCCGCCCTCATCAGCGCCTGTTGTTCCATTCGCCGGCTTGCCTC
TCCATGGCCTGCCTCTTAAAAGGTGCTGCGATGGACGACCCGGTGGCTGG
TGCAGTGCCAACAGGAGTTGCTACAAGGACACGCGCCTGAAGATACGCAA
TCTGTCCATGTTCAAACTCTCCCGTTTCCGGCAGGTTTCTGAGCAGTCGC
TGTACCGCTCGGTGCTCATTTGCAATACGCTGAAGCGCATTGATCGGGAG
ATCGAAGCAGAGGCCAAGGAGCTGCACCAGGCGGCGCAACAGCACCACCA
ACAGGCGGCAGCAGCAGCAGCCGCAGCAGCAGCAGCGGCGGCACAAGCGG
CTCAGTACCACCCAGCCTACCAGCAGCAGCAGCAGCAGCAGCAATCCCCG
CCAGCACCTCTGCATCCACATACGCAGCAGCAGATGGACTATGCGCCCGT
GTTGAACTGTGCTCGTTTGGCCAACATGGATCACTACCAGCAACTCAGTT
TCCAGCCCCAACACCAGCAGCAACAGCAGCCTTCGCAGCCGCATAGCTAC
CACGAGCGTCTGGACAGCCAACCCGCCTACAGGGGCGCGGCAGCGGGTGC
GGGCAGCTTCGCCACGCAGCCGAGCAACTGTGATACATCAGCGGGTGCAA
GTAGCAGCAATACCAGCGGCAACAGCAACAACTCCTCAGCGACGGCGGCG
AGCAGCAACAGTAGTTTGCACCCCTACGATCACTATCCCTTTCGGGAGTC
GCAATCTGGTCGAGCAACGCCCTTTCCGGCCTGCCCCACCACAACAGCAG
CAGCGGCAGCAGCTTCGGCAGCAGCCGCAGCTTCCAGTGGAGGAGCAGCA
ACAACACTAAGTAGCAACATCAGCAGCTCCCCCGCATCAAGCAGCACTAG
CAGCAACACCACTTCCTCAACGGTGATCAGCAGCAGTAGTGGGAATACCG
TGAGCAGCAACGGCACCACGCCAGTTGCACCTACCGCAAGCAGCAGCAAC
TGCGATACTAGCGATTCGGGTTATGCGGACGACGACTCCACGCGATCCAT
CAACTGGAGTTCGGTGCTGAGCCTCAGTTCGCAATCGGCGTTGGATCCGC
TCAACAACAACGATTTGTTTAGCATACTTCCGTCGGCGGCCACACCTACA
GCGGTGCCAGTTTCAGTGCCAGCCAGTAGTTCCAGTTCCTCCTCGGGGTC
CACGCTGGCATTCAGTGGAAGCTTCACCACCGTACAAGCCAGCGGCGGCA
GTAGCAGTTCCTGCGGAAGCAGCTCCACCACCGCCACATTCACCACCCTG
TCGACCATCTCCTCGGCCACCCACTCGCTGACCTCGTCGTATGTAAGCAG
CATTAGCTCCAATGTGTCGGCGGGCGCCAATACCTGGGAGTACGGATTCC
TGGACATGGAATTCGGACTCGGTTCGGAGTTCACGGAGCTGGTACCCAGC
TGTAAGCTCAGCTCCGAGGATCTGTTCAAGAGCGGATTGGGCGGTCAGGT
TGTGACCGCCTCCCGCCTGCACGACAACGAACTGGAGCACCCGGCCCACA
TCATGGTCGGTAGTTAGAAGCTTTCTAGACCAT

BS16657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:03:01
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 2751 CG6889-PA 1..2751 17..2767 13755 100 Plus
tara-RB 2739 CG6889-PB 13..2739 41..2767 13635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 4341 CG6889-RA 765..3516 16..2767 13760 100 Plus
tara-RB 4066 CG6889-RB 515..3241 41..2767 13635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16256778..16259504 41..2767 13635 100 Plus
Blast to na_te.dros performed 2014-11-28 02:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..3014 1460..2217 381 56 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2401..2982 1470..2077 377 56.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2552 1981..2216 322 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6926 1989..2170 298 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2664 1850..2200 293 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..7112 1703..2107 243 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6995 1846..2121 240 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6872 2060..2212 226 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2313..2685 1703..2095 218 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..7007 1835..2107 208 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..7028 1803..2121 202 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2352..2665 1836..2168 189 56.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2421 2090..2200 166 65.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6823 1524..1633 161 66.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6866 1850..1915 157 73.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6795..7008 1680..1883 150 59.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6773..7217 1672..2123 141 55 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1527..1584 1672..1730 130 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1087..1142 1678..1730 128 75 Plus

BS16657.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:57 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 768..3518 17..2767 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:04:34 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 768..3518 17..2767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:12:26 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 768..3518 17..2767 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:02:47 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
tara-RA 766..3516 17..2767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:02:47 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16226416..16226439 17..40 100 -> Plus
3R 16256778..16259504 41..2767 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:04:34 Download gff for BS16657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12052138..12052161 17..40 100 -> Plus
arm_3R 12082500..12085226 41..2767 100   Plus

BS16657.3prime Sequence

824 bp (806 high quality bases) assembled on 2007-05-15

> BS16657.3prime
ATGGTCTAGAAAGCTTCTAACTACCGACCATGATGTGGGCCGGGTGCTCC
AGTTCGTTGTCGTGCAGGCGGGAGGCGGTCACAACCTGACCGCCCAATCC
GCTCTTGAACAGATCCTCGGAGCTGAGCTTACAGCTGGGTACCAGCTCCG
TGAACTCCGAACCGAGTCCGAATTCCATGTCCAGGAATCCGTACTCCCAG
GTATTGGCGCCCGCCGACACATTGGAGCTAATGCTGCTTACATACGACGA
GGTCAGCGAGTGGGTGGCCGAGGAGATGGTCGACAGGGTGGTGAATGTGG
CGGTGGTGGAGCTGCTTCCGCAGGAACTGCTACTGCCGCCGCTGGCTTGT
ACGGTGGTGAAGCTTCCACTGAATGCCAGCGTGGACCCCGAGGAGGAACT
GGAACTACTGGCTGGCACTGAAACTGGCACCGCTGTAGGTGTGGCCGCCG
ACGGAAGTATGCTAAACAAATCGTTGTTGTTGAGCGGATCCAACGCCGAT
TGCGAACTGAGGCTCAGCACCGAACTCCAGTTGATGGATCGCGTGGAGTC
GTCGTCCGCATAACCCGAATCGCTAGTATCGCAGTTGCTGCTGCTTGCGG
TAGGTGCAACTGGCGTGGTGCCGTTGCTGCTCACGGTATTCCCACTACTG
CTGCTGATCACCGTTGAGGAAGTGGTGTTGCTGCTAGTGCTGCTTGATGC
GGGGGAGCTGCTGATGTTGCTACTTAGTGTTGTTGCTGCTCCTCCACTGG
AAGCTGCGGCTGCTGCCGAAGCTGCTGCCGCTGCTGCTGTTGTGGTGGGG
CAGGCCGGAAAGGGCGTTGCTCGA

BS16657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6889-PA 2751 tara-RA 1944..2751 824..17 4040 100 Minus
CG6889-PB 2739 tara-RB 1932..2739 824..17 4040 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RB 4066 CG6889-RB 2434..3241 824..17 4040 100 Minus
tara-RA 4341 CG6889-RA 2709..3516 824..17 4040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16258697..16259504 824..17 4040 100 Minus
Blast to na_te.dros performed 2015-02-11 03:49:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2552 803..568 322 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6749..6926 795..614 298 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2526 787..572 272 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6723..6872 724..572 226 67.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2311..2421 694..584 166 65.5 Minus

BS16657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:11 Download gff for BS16657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6889-PB 1933..2739 17..823 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:15 Download gff for BS16657.3prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 2712..3518 17..823 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:40 Download gff for BS16657.3prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 2710..3516 17..823 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:40 Download gff for BS16657.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16258698..16259504 17..823 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:15 Download gff for BS16657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12084420..12085226 17..823 100   Minus

BS16657.5prime Sequence

521 bp (408 high quality bases) assembled on 2007-05-15

> BS16657.5prime
GAAGTTATCAGTCGACATGAAAATGTGGACGGAATCCAATGTGAATTCCG
CGATGGGTCTTCAAGCAACAGCCGCCACCAAGCGGAAGCATGAGCTGACC
TTCGACAGCAAGGATGCCAACACCACCTACACGGGCAACTGTGCCCCGCC
CCCCGTCAAGGCCAACAAGTGGGCCATCAGCAACAACAACTACCTGGAGT
CGCTCGAGGAGCAGCAGCAGCAACAGCAATCGCCATCGGAGCCAGCTGTT
GAGTCCAACAACAACCACATTGTTTTAGAAGCATCAATGGATGCGTTGAA
GCCAACGGAGCCAAGTATTAGCAATGGTCATGAAGTTACTACCGCCGTCG
CAGCAATGAAAAGTCAAGCGGAGGTGCCACTCCCGCCAACAGCGAGTGCG
GCGATACCGGAGGACAGTATCGCCAGGTTAGAGGTGGTCACCTCAGCCGT
TCCTTGTGAGCCCTGGACGAGCAATGGGCCCACTACTCCTTCCGCGGTGG
CAGGACCCGCAGCATCCGCGG

BS16657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6889-PA 2751 tara-RA 1..505 17..521 2525 100 Plus
CG6889-PB 2739 tara-RB 13..493 41..521 2405 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:39
Subject Length Description Subject Range Query Range Score Percent Strand
tara-RA 4341 CG6889-RA 765..1270 16..521 2530 100 Plus
tara-RB 4066 CG6889-RB 515..995 41..521 2405 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16256778..16257258 41..521 2405 100 Plus
Blast to na_te.dros performed 2015-02-10 20:54:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2318..2431 162..269 160 64.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6826 109..229 130 62.9 Plus
roo 9092 roo DM_ROO 9092bp 1086..1123 207..244 109 76.3 Plus

BS16657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:56 Download gff for BS16657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6889-PA 1..505 17..521 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:17 Download gff for BS16657.5prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 759..1272 9..521 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:03 Download gff for BS16657.5prime
Subject Subject Range Query Range Percent Splice Strand
tara-RA 757..1270 9..521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:03 Download gff for BS16657.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16256778..16257258 41..521 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:17 Download gff for BS16657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12082500..12082980 41..521 100   Plus

BS16657.pep Sequence

Translation from 16 to 2766

> BS16657.pep
MKMWTESNVNSAMGLQATAATKRKHELTFDSKDANTTYTGNCAPPPVKAN
KWAISNNNYLESLEEQQQQQQSPSEPAVESNNNHIVLEASMDALKPTEPS
ISNGHEVTTAVAAMKSQAEVPLPPTASAAIPEDSIARLEVVTSAVPCEPW
TSNGPTTPSAVAGPAASAEPVDCISKLQAVAVPSDPWGSIATRSTLATTL
LSADELDDDDDDFEDDYEEEESIIPTYCPMRYHPFVPHPHPHSHQLPSHP
HQQQPQQLSQQQPHPQQQQLAQQQQQHPQQQRSYAPGYGSRQPNYYSEPF
PQQNCSRTGGPQHMTQSPPTPQQARGFAPPQWATAGSSPANPSSGAQQFY
EPTNGGAYAPPAAPQQTIRCAENGKSYLDLGCSSGASGNAGGSPISPPPS
SAPVVPFAGLPLHGLPLKRCCDGRPGGWCSANRSCYKDTRLKIRNLSMFK
LSRFRQVSEQSLYRSVLICNTLKRIDREIEAEAKELHQAAQQHHQQAAAA
AAAAAAAAAQAAQYHPAYQQQQQQQQSPPAPLHPHTQQQMDYAPVLNCAR
LANMDHYQQLSFQPQHQQQQQPSQPHSYHERLDSQPAYRGAAAGAGSFAT
QPSNCDTSAGASSSNTSGNSNNSSATAASSNSSLHPYDHYPFRESQSGRA
TPFPACPTTTAAAAAASAAAAASSGGAATTLSSNISSSPASSSTSSNTTS
STVISSSSGNTVSSNGTTPVAPTASSSNCDTSDSGYADDDSTRSINWSSV
LSLSSQSALDPLNNNDLFSILPSAATPTAVPVSVPASSSSSSSGSTLAFS
GSFTTVQASGGSSSSCGSSSTTATFTTLSTISSATHSLTSSYVSSISSNV
SAGANTWEYGFLDMEFGLGSEFTELVPSCKLSSEDLFKSGLGGQVVTASR
LHDNELEHPAHIMVGS*

BS16657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
tara-PA 916 CG6889-PA 1..916 1..916 4782 100 Plus
tara-PB 912 CG6889-PB 3..912 7..916 4737 99.8 Plus
Mur29B-PA 555 CG31901-PA 212..475 591..856 215 30.3 Plus
cpo-PY 606 CG43738-PY 189..416 480..706 213 30.2 Plus
cpo-PX 606 CG43738-PX 189..416 480..706 213 30.2 Plus
Mur29B-PA 555 CG31901-PA 156..469 583..883 210 27.6 Plus
Mur29B-PA 555 CG31901-PA 148..410 591..856 209 28.1 Plus
Mur29B-PA 555 CG31901-PA 116..378 591..856 208 28.4 Plus
Mur29B-PA 555 CG31901-PA 92..346 599..856 198 27.9 Plus
cpo-PY 606 CG43738-PY 158..440 487..740 197 27.3 Plus
Mur29B-PA 555 CG31901-PA 90..309 606..848 190 30.5 Plus
Mur29B-PA 555 CG31901-PA 87..282 658..856 188 31.5 Plus
Mur29B-PA 555 CG31901-PA 108..356 607..856 188 27.4 Plus
Mur29B-PA 555 CG31901-PA 242..485 591..838 179 26.8 Plus