Clone Sequence Records
BS16661.complete Sequence
2132 bp assembled on 2009-12-08
GenBank Submission: KX806016
> BS16661.complete
GAAGTTATCAGTCGACATGGATCAATTCATAACTTCGACTTTGAAAAACC
GTAGACGACGTTCTCTTGGATTGCGACTCTTAATATGTTACCTTAAAAAA
AGTGACATTAAATTAGAGGAAAATGTTAATACATGGACATATTTATTAGT
TCAATCATGCAAATTACCTGAGTTGTGTTCATATGGTGATTTAATATTTT
CCGCTATGGCACTCCTTCTGGACAAAATCCAGAGTGACGGTAATGTGTCA
AAAGTATTCGCATCTGCTCATTTATCTAAAGTACTGGAATGCTTATCTCA
CAACGAAATATATAAGCACAATCGCTCAACTATTGCTGCCTTACACACAA
TCAAGAAATGCCTAAAATATTACCCAAAAGGAATAAAAACTAAATCATCA
AGTATCAAAAATATATTAGTACTATTAATTGACAGCCAAAACGATGAAGT
TGTTTATCAATCTGGTGAATGTTGGTTTTTGTTACACAAAATTCATGGCA
TTTCCGATAAAGAACATATGGATAATAAAACTGAATGGAAGGATTTTCAA
TTATCTTTACTGAGTAATATCCAATATATTATAAATAGAACAATAGTTAT
GCCTGACGAATCCGTTAACAGCCCTTTTATGCCAAATCATTTTGGAGCTT
TCACTTTTGTAGCTGTAAAAGATCCTTTTGAAAGGGCTTCAAAAGCTTTT
CGACGGATTTTTAATCTTATTGAATATATCAAAATTGCTTTAAGCAAACA
ATTTGTTTTCAAAAAGAATATTTGCGTACATCAAATCTTGTCTTTAATAC
AAAATGGACTAAATGCACACGTAAACCAACAAAATGTACGAATTAATCAT
GCATATCTTGAGACATTTTTTCCGCAAATGCACATAAAATTATTGGAGCT
TTTGGAAATTGTCATTAAAACATGTCATACACACCTAAGGATGGACTTTC
GGCTTGTTCTAAATATTTTAATGGAAGCCCTTGAAAAAACAAACAAATCA
ATGTTACTAGAATCAAATTTAAAGGAAGTTTTGAATATGCGCCTAGTTGT
GTACAGAGTAATATCTTTATGGTGCTCTACTCTACAAGAAGGAAGCCATT
GCGAAATTATTGCGGATACTCTTATCAAAGAAGTGTTTGATGATATATTA
ACGCGAAGCCCAACTACTAAAAAAAGTGTAAACGCACCATACATGAAACT
TTCACCTGAAACTCTATTTTCGATGTTGAAATGTTCATTAAGTAATGAAG
ACTATCGTATGCTTAGTCAACAAGCACACTCTTGCCTACAACAGTTTTTG
TTATCTTCTGGTCATTTGATAAAGCATCAACTTTTAAAGGCGGTGCACCA
CACCTTATTGGGAATTTGTGTTCAAATGCATTCTCAGTCTAGCAAAGAAC
CAGACTTGTGGGATATTTGGGACGGGCGCTTGGAAGTTTATAAGTCTTTC
ACAGTTCTATTGAAATTACGAAACTATGGATGTCCTACGCCTTCTGAAAT
AATTTGGAATCTTTTGCACGAATCCCGATTATTTAATAATAACATTGCAC
TTAAGCAAAGTCATAGTTCTAACTTGGAAACGATGCTTCATCCTCAAAAG
GCGGATATTAACTTTAAAAGTGTTGACAATTTAAAGAAAACAATCGCCTT
TTCAACAAATAAAACGGAAAATAGACACGATTTGTTACAAACTATCAAGA
GTCCCGAAGACCAATTATGTAATAATGAAAGTCCACTGATATCGGCCATT
GAAACCATTGCAAATAATAAGGATAATCAAAAAAACCCTGGCTACGACAA
TAATTCGTTGAATAAAAAGAAACCTTTTGAAGTAGTTTGTAAAAATGACT
CAAAAGATTTAATTGCTGAAGATACACCAAAAAATATTAATGAGATACCA
GATGGCCCTTTGCTCTCATCAAAAATCAACAGTTCAGAGAGTTTACAAGG
ACAACCCCTAGAAATTTTGAATGGCAATAATGTGAACTCTAATTTAATAT
CATCCTGTTGCAGTGCTGAAGAATCTGTAAAAATGTTTCCTTCGAACTTG
GAAAAATTAGATGATGCTAAAATGATAGCCGACTTGGAAGCAACATTCGT
TGGTGAACTTAAATAAAAGCTTTCTAGACCAT
BS16661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-RA | 2100 | CG33217-PA | 1..2100 | 17..2116 | 10485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-RA | 2227 | CG33217-RA | 103..2204 | 17..2118 | 10495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23131402..23132186 | 1334..2118 | 3910 | 99.9 | Plus |
3L | 28110227 | 3L | 23137503..23138287 | 1334..2118 | 3910 | 99.9 | Plus |
3L | 28110227 | 3L | 23126716..23127251 | 209..744 | 2665 | 99.8 | Plus |
3L | 28110227 | 3L | 23126208..23126400 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 23127307..23127489 | 739..921 | 900 | 99.5 | Plus |
3L | 28110227 | 3L | 23131189..23131351 | 1178..1340 | 815 | 100 | Plus |
3L | 28110227 | 3L | 23137290..23137452 | 1178..1340 | 815 | 100 | Plus |
3L | 28110227 | 3L | 23130510..23130659 | 1033..1182 | 750 | 100 | Plus |
3L | 28110227 | 3L | 23136611..23136760 | 1033..1182 | 750 | 100 | Plus |
3L | 28110227 | 3L | 23128260..23128371 | 922..1033 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:50:21 has no hits.
BS16661.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:02 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 97..2194 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:13 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 103..2200 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:37 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 97..2194 | 17..2114 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:00 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 103..2200 | 17..2114 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:00 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23126208..23126400 | 17..209 | 100 | -> | Plus |
3L | 23126717..23127251 | 210..744 | 99 | -> | Plus |
3L | 23127313..23127489 | 745..921 | 100 | -> | Plus |
3L | 23128260..23128370 | 922..1032 | 100 | -> | Plus |
3L | 23130510..23130654 | 1033..1177 | 100 | -> | Plus |
3L | 23131189..23131354 | 1178..1339 | 97 | -> | Plus |
3L | 23131408..23132182 | 1340..2114 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:13 Download gff for
BS16661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23119308..23119500 | 17..209 | 100 | -> | Plus |
arm_3L | 23119817..23120351 | 210..744 | 99 | -> | Plus |
arm_3L | 23120413..23120589 | 745..921 | 100 | -> | Plus |
arm_3L | 23121360..23121470 | 922..1032 | 100 | -> | Plus |
arm_3L | 23123610..23123754 | 1033..1177 | 100 | -> | Plus |
arm_3L | 23124289..23124454 | 1178..1339 | 97 | -> | Plus |
arm_3L | 23124508..23125282 | 1340..2114 | 100 | | Plus |
BS16661.3prime Sequence
844 bp (773 high quality bases) assembled on 2007-05-15
> BS16661.3prime
ATGGTCTAGAAAGCTTTTATTTAAGTTCACCAACGAATGTTGCTTCCAAG
TCGGCTATCATTTTAGCATCATCTAATTTTTCCAAGTTCGAAGGAAACAT
TTTTACAGATTCTTCAGCACTGCAACAGGATGATATTAAATTAGAGTTCA
CATTATTGCCATTCAAAATTTCTAGGGGTTGTCCTTGTAAACTCTCTGAA
CTGTTGATTTTTGATGAGAGCAAAGGGCCATCTGGTATCTCATTAATATT
TTTTGGTGTATCTTCAGCAATTAAATCTTTTGAGTCATTTTTACAAACTA
CTTCAAAAGGTTTCTTTTTATTCAACGAATTATTGTCGTAGCCAGGGTTT
TTTTGATTATCCTTATTATTTGCAATGGTTTCAATGGCCGATATCAGTGG
ACTTTCATTATTACATAATTGGTCTTCGGGACTCTTGATAGTTTGTAACA
AATCGTGTCTATTTTCCGTTTTATTTGTTGAAAAGGCGATTGTTTTCTTT
AAATTGTCAACACTTTTAAAGTTAATATCCGCCTTTTGAGGATGAAGCAT
CGTTTCCAAGTTAGAACTATGACTTTGCTTAAGTGCAATGTTATTATTAA
ATAATCGGGATTCGTGCAAAAGATTCCAAATTATTTCAGAAGGCGTAGGA
CATCCATAGTTTCGTAATTTCAATAGAACTGTGAAAGACTTATAAACTTC
CAAGCGCCCGTCCCAAATATCCCACAAGTCTGGTTCTTTGCTAGACTGAG
AATGCATTTGAACACAAATTCCCAATAAGGTGTGGTGCACCGCCTTTAAA
AGTGATGCTTTATCAAATGACCAGAAGATACAAAAACTGTTGTA
BS16661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-PA | 2100 | CG33217-RA | 1314..2100 | 803..17 | 3935 | 100 | Minus |
CG41454-PA | 930 | CG41454-RA | 1..727 | 757..31 | 3635 | 100 | Minus |
CG33217-PA | 2100 | CG33217-RA | 1286..1313 | 830..803 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-RA | 2227 | CG33217-RA | 1373..2204 | 844..15 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23131402..23132186 | 799..15 | 3910 | 99.9 | Minus |
3L | 28110227 | 3L | 23137503..23138287 | 799..15 | 3910 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:17:32 has no hits.
BS16661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:16 Download gff for
BS16661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-PA | 1272..2100 | 17..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:02 Download gff for
BS16661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1374..2204 | 15..843 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:42 Download gff for
BS16661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 1374..2204 | 15..843 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:42 Download gff for
BS16661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23131408..23132186 | 15..793 | 100 | | Minus |
3L | 23131299..23131350 | 794..843 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:02 Download gff for
BS16661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23124399..23124450 | 794..843 | 96 | -> | Minus |
arm_3L | 23124508..23125286 | 15..793 | 100 | | Minus |
BS16661.5prime Sequence
869 bp (779 high quality bases) assembled on 2007-05-15
> BS16661.5prime
GAAGTTATCAGTCGACATGGATCAATTCATAACTTCGACTTTGAAAAACC
GTAGACGACGTTCTCTTGGATTGCGACTCTTAATATGTTACCTTAAAAAA
AGTGACATTAAATTAGAGGAAAATGTTAATACATGGACATATTTATTAGT
TCAATCATGCAAATTACCTGAGTTGTGTTCATATGGTGATTTAATATTTT
CCGCTATGGCACTCCTTCTGGACAAAATCCAGAGTGACGGTAATGTGTCA
AAAGTATTCGCATCTGCTCATTTATCTAAAGTACTGGAATGCTTATCTCA
CAACGAAATATATAAGCACAATCGCTCAACTATTGCTGCCTTACACACAA
TCAAGAAATGCCTAAAATATTACCCAAAAGGAATAAAAACTAAATCATCA
AGTATCAAAAATATATTAGTACTATTAATTGACAGCCAAAACGATGAAGT
TGTTTATCAATCTGGTGAATGTTGGTTTTTGTTACACAAAATTCATGGCA
TTTCCGATAAAGAACATATGGATAATAAAACTGAATGGAAGGATTTTCAA
TTATCTTTACTGAGTAATATCCAATATATTATAAATAGAACAATAGTTAT
GCCTGACGAATCCGTTAACAGCCCTTTTATGCCAAATCATTTTGGAGCTT
TCACTTTTGTAGCTGTAAAAGATCCTTTTGAAAGGGCTTCAAAAGCTTTT
CGACGGATTTTTAATCTTATTGAATATATCAAAATTGCTTTAAGCAAACA
ATTTGTTTTCAAAAAGAATATTTGCGTACATCAAATCTTGTCTTTAATAC
AAAATGGACTAAATGCACACGTAAACCAAACAAATGTACGAATTAATCAT
GCATATCTTGAGACATTTT
BS16661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-PA | 2100 | CG33217-RA | 1..853 | 17..869 | 4190 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-RA | 2227 | CG33217-RA | 103..955 | 17..869 | 4220 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 23126716..23127251 | 209..744 | 2665 | 99.8 | Plus |
3L | 28110227 | 3L | 23126208..23126400 | 17..209 | 965 | 100 | Plus |
3L | 28110227 | 3L | 23127307..23127437 | 739..869 | 610 | 97.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:07:13 has no hits.
BS16661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:01 Download gff for
BS16661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-PA | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:33 Download gff for
BS16661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 96..955 | 6..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:10 Download gff for
BS16661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33217-RA | 96..955 | 6..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:10 Download gff for
BS16661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 23126201..23126400 | 6..209 | 98 | -> | Plus |
3L | 23126717..23127251 | 210..744 | 99 | -> | Plus |
3L | 23127313..23127437 | 745..869 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:33 Download gff for
BS16661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 23119301..23119500 | 6..209 | 98 | -> | Plus |
arm_3L | 23119817..23120351 | 210..744 | 99 | -> | Plus |
arm_3L | 23120413..23120537 | 745..869 | 98 | | Plus |
BS16661.pep Sequence
Translation from 16 to 2115
> BS16661.pep
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKAVHHTLLGI
CVQMHSQSSKEPDLWDIWDGRLEVYKSFTVLLKLRNYGCPTPSEIIWNLL
HESRLFNNNIALKQSHSSNLETMLHPQKADINFKSVDNLKKTIAFSTNKT
ENRHDLLQTIKSPEDQLCNNESPLISAIETIANNKDNQKNPGYDNNSLNK
KKPFEVVCKNDSKDLIAEDTPKNINEIPDGPLLSSKINSSESLQGQPLEI
LNGNNVNSNLISSCCSAEESVKMFPSNLEKLDDAKMIADLEATFVGELK*
BS16661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33217-PA | 699 | CG33217-PA | 1..699 | 1..699 | 3619 | 100 | Plus |