Clone BS16661 Report

Search the DGRC for BS16661

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG33217-RA
Protein status:BS16661.pep: full length peptide match
Sequenced Size:2132

Clone Sequence Records

BS16661.complete Sequence

2132 bp assembled on 2009-12-08

GenBank Submission: KX806016

> BS16661.complete
GAAGTTATCAGTCGACATGGATCAATTCATAACTTCGACTTTGAAAAACC
GTAGACGACGTTCTCTTGGATTGCGACTCTTAATATGTTACCTTAAAAAA
AGTGACATTAAATTAGAGGAAAATGTTAATACATGGACATATTTATTAGT
TCAATCATGCAAATTACCTGAGTTGTGTTCATATGGTGATTTAATATTTT
CCGCTATGGCACTCCTTCTGGACAAAATCCAGAGTGACGGTAATGTGTCA
AAAGTATTCGCATCTGCTCATTTATCTAAAGTACTGGAATGCTTATCTCA
CAACGAAATATATAAGCACAATCGCTCAACTATTGCTGCCTTACACACAA
TCAAGAAATGCCTAAAATATTACCCAAAAGGAATAAAAACTAAATCATCA
AGTATCAAAAATATATTAGTACTATTAATTGACAGCCAAAACGATGAAGT
TGTTTATCAATCTGGTGAATGTTGGTTTTTGTTACACAAAATTCATGGCA
TTTCCGATAAAGAACATATGGATAATAAAACTGAATGGAAGGATTTTCAA
TTATCTTTACTGAGTAATATCCAATATATTATAAATAGAACAATAGTTAT
GCCTGACGAATCCGTTAACAGCCCTTTTATGCCAAATCATTTTGGAGCTT
TCACTTTTGTAGCTGTAAAAGATCCTTTTGAAAGGGCTTCAAAAGCTTTT
CGACGGATTTTTAATCTTATTGAATATATCAAAATTGCTTTAAGCAAACA
ATTTGTTTTCAAAAAGAATATTTGCGTACATCAAATCTTGTCTTTAATAC
AAAATGGACTAAATGCACACGTAAACCAACAAAATGTACGAATTAATCAT
GCATATCTTGAGACATTTTTTCCGCAAATGCACATAAAATTATTGGAGCT
TTTGGAAATTGTCATTAAAACATGTCATACACACCTAAGGATGGACTTTC
GGCTTGTTCTAAATATTTTAATGGAAGCCCTTGAAAAAACAAACAAATCA
ATGTTACTAGAATCAAATTTAAAGGAAGTTTTGAATATGCGCCTAGTTGT
GTACAGAGTAATATCTTTATGGTGCTCTACTCTACAAGAAGGAAGCCATT
GCGAAATTATTGCGGATACTCTTATCAAAGAAGTGTTTGATGATATATTA
ACGCGAAGCCCAACTACTAAAAAAAGTGTAAACGCACCATACATGAAACT
TTCACCTGAAACTCTATTTTCGATGTTGAAATGTTCATTAAGTAATGAAG
ACTATCGTATGCTTAGTCAACAAGCACACTCTTGCCTACAACAGTTTTTG
TTATCTTCTGGTCATTTGATAAAGCATCAACTTTTAAAGGCGGTGCACCA
CACCTTATTGGGAATTTGTGTTCAAATGCATTCTCAGTCTAGCAAAGAAC
CAGACTTGTGGGATATTTGGGACGGGCGCTTGGAAGTTTATAAGTCTTTC
ACAGTTCTATTGAAATTACGAAACTATGGATGTCCTACGCCTTCTGAAAT
AATTTGGAATCTTTTGCACGAATCCCGATTATTTAATAATAACATTGCAC
TTAAGCAAAGTCATAGTTCTAACTTGGAAACGATGCTTCATCCTCAAAAG
GCGGATATTAACTTTAAAAGTGTTGACAATTTAAAGAAAACAATCGCCTT
TTCAACAAATAAAACGGAAAATAGACACGATTTGTTACAAACTATCAAGA
GTCCCGAAGACCAATTATGTAATAATGAAAGTCCACTGATATCGGCCATT
GAAACCATTGCAAATAATAAGGATAATCAAAAAAACCCTGGCTACGACAA
TAATTCGTTGAATAAAAAGAAACCTTTTGAAGTAGTTTGTAAAAATGACT
CAAAAGATTTAATTGCTGAAGATACACCAAAAAATATTAATGAGATACCA
GATGGCCCTTTGCTCTCATCAAAAATCAACAGTTCAGAGAGTTTACAAGG
ACAACCCCTAGAAATTTTGAATGGCAATAATGTGAACTCTAATTTAATAT
CATCCTGTTGCAGTGCTGAAGAATCTGTAAAAATGTTTCCTTCGAACTTG
GAAAAATTAGATGATGCTAAAATGATAGCCGACTTGGAAGCAACATTCGT
TGGTGAACTTAAATAAAAGCTTTCTAGACCAT

BS16661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-RA 2100 CG33217-PA 1..2100 17..2116 10485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-RA 2227 CG33217-RA 103..2204 17..2118 10495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23131402..23132186 1334..2118 3910 99.9 Plus
3L 28110227 3L 23137503..23138287 1334..2118 3910 99.9 Plus
3L 28110227 3L 23126716..23127251 209..744 2665 99.8 Plus
3L 28110227 3L 23126208..23126400 17..209 965 100 Plus
3L 28110227 3L 23127307..23127489 739..921 900 99.5 Plus
3L 28110227 3L 23131189..23131351 1178..1340 815 100 Plus
3L 28110227 3L 23137290..23137452 1178..1340 815 100 Plus
3L 28110227 3L 23130510..23130659 1033..1182 750 100 Plus
3L 28110227 3L 23136611..23136760 1033..1182 750 100 Plus
3L 28110227 3L 23128260..23128371 922..1033 560 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:50:21 has no hits.

BS16661.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:42:02 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 97..2194 17..2114 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:59:13 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 103..2200 17..2114 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:37 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 97..2194 17..2114 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:58:00 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 103..2200 17..2114 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:58:00 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23126208..23126400 17..209 100 -> Plus
3L 23126717..23127251 210..744 99 -> Plus
3L 23127313..23127489 745..921 100 -> Plus
3L 23128260..23128370 922..1032 100 -> Plus
3L 23130510..23130654 1033..1177 100 -> Plus
3L 23131189..23131354 1178..1339 97 -> Plus
3L 23131408..23132182 1340..2114 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:59:13 Download gff for BS16661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23119308..23119500 17..209 100 -> Plus
arm_3L 23119817..23120351 210..744 99 -> Plus
arm_3L 23120413..23120589 745..921 100 -> Plus
arm_3L 23121360..23121470 922..1032 100 -> Plus
arm_3L 23123610..23123754 1033..1177 100 -> Plus
arm_3L 23124289..23124454 1178..1339 97 -> Plus
arm_3L 23124508..23125282 1340..2114 100   Plus

BS16661.3prime Sequence

844 bp (773 high quality bases) assembled on 2007-05-15

> BS16661.3prime
ATGGTCTAGAAAGCTTTTATTTAAGTTCACCAACGAATGTTGCTTCCAAG
TCGGCTATCATTTTAGCATCATCTAATTTTTCCAAGTTCGAAGGAAACAT
TTTTACAGATTCTTCAGCACTGCAACAGGATGATATTAAATTAGAGTTCA
CATTATTGCCATTCAAAATTTCTAGGGGTTGTCCTTGTAAACTCTCTGAA
CTGTTGATTTTTGATGAGAGCAAAGGGCCATCTGGTATCTCATTAATATT
TTTTGGTGTATCTTCAGCAATTAAATCTTTTGAGTCATTTTTACAAACTA
CTTCAAAAGGTTTCTTTTTATTCAACGAATTATTGTCGTAGCCAGGGTTT
TTTTGATTATCCTTATTATTTGCAATGGTTTCAATGGCCGATATCAGTGG
ACTTTCATTATTACATAATTGGTCTTCGGGACTCTTGATAGTTTGTAACA
AATCGTGTCTATTTTCCGTTTTATTTGTTGAAAAGGCGATTGTTTTCTTT
AAATTGTCAACACTTTTAAAGTTAATATCCGCCTTTTGAGGATGAAGCAT
CGTTTCCAAGTTAGAACTATGACTTTGCTTAAGTGCAATGTTATTATTAA
ATAATCGGGATTCGTGCAAAAGATTCCAAATTATTTCAGAAGGCGTAGGA
CATCCATAGTTTCGTAATTTCAATAGAACTGTGAAAGACTTATAAACTTC
CAAGCGCCCGTCCCAAATATCCCACAAGTCTGGTTCTTTGCTAGACTGAG
AATGCATTTGAACACAAATTCCCAATAAGGTGTGGTGCACCGCCTTTAAA
AGTGATGCTTTATCAAATGACCAGAAGATACAAAAACTGTTGTA

BS16661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-PA 2100 CG33217-RA 1314..2100 803..17 3935 100 Minus
CG41454-PA 930 CG41454-RA 1..727 757..31 3635 100 Minus
CG33217-PA 2100 CG33217-RA 1286..1313 830..803 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:17:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-RA 2227 CG33217-RA 1373..2204 844..15 4110 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23131402..23132186 799..15 3910 99.9 Minus
3L 28110227 3L 23137503..23138287 799..15 3910 99.9 Minus
Blast to na_te.dros performed on 2015-02-12 16:17:32 has no hits.

BS16661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:16 Download gff for BS16661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-PA 1272..2100 17..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:02 Download gff for BS16661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1374..2204 15..843 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:34:42 Download gff for BS16661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 1374..2204 15..843 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:34:42 Download gff for BS16661.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 23131408..23132186 15..793 100   Minus
3L 23131299..23131350 794..843 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:02 Download gff for BS16661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23124399..23124450 794..843 96 -> Minus
arm_3L 23124508..23125286 15..793 100   Minus

BS16661.5prime Sequence

869 bp (779 high quality bases) assembled on 2007-05-15

> BS16661.5prime
GAAGTTATCAGTCGACATGGATCAATTCATAACTTCGACTTTGAAAAACC
GTAGACGACGTTCTCTTGGATTGCGACTCTTAATATGTTACCTTAAAAAA
AGTGACATTAAATTAGAGGAAAATGTTAATACATGGACATATTTATTAGT
TCAATCATGCAAATTACCTGAGTTGTGTTCATATGGTGATTTAATATTTT
CCGCTATGGCACTCCTTCTGGACAAAATCCAGAGTGACGGTAATGTGTCA
AAAGTATTCGCATCTGCTCATTTATCTAAAGTACTGGAATGCTTATCTCA
CAACGAAATATATAAGCACAATCGCTCAACTATTGCTGCCTTACACACAA
TCAAGAAATGCCTAAAATATTACCCAAAAGGAATAAAAACTAAATCATCA
AGTATCAAAAATATATTAGTACTATTAATTGACAGCCAAAACGATGAAGT
TGTTTATCAATCTGGTGAATGTTGGTTTTTGTTACACAAAATTCATGGCA
TTTCCGATAAAGAACATATGGATAATAAAACTGAATGGAAGGATTTTCAA
TTATCTTTACTGAGTAATATCCAATATATTATAAATAGAACAATAGTTAT
GCCTGACGAATCCGTTAACAGCCCTTTTATGCCAAATCATTTTGGAGCTT
TCACTTTTGTAGCTGTAAAAGATCCTTTTGAAAGGGCTTCAAAAGCTTTT
CGACGGATTTTTAATCTTATTGAATATATCAAAATTGCTTTAAGCAAACA
ATTTGTTTTCAAAAAGAATATTTGCGTACATCAAATCTTGTCTTTAATAC
AAAATGGACTAAATGCACACGTAAACCAAACAAATGTACGAATTAATCAT
GCATATCTTGAGACATTTT

BS16661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-PA 2100 CG33217-RA 1..853 17..869 4190 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-RA 2227 CG33217-RA 103..955 17..869 4220 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23126716..23127251 209..744 2665 99.8 Plus
3L 28110227 3L 23126208..23126400 17..209 965 100 Plus
3L 28110227 3L 23127307..23127437 739..869 610 97.7 Plus
Blast to na_te.dros performed on 2015-02-11 22:07:13 has no hits.

BS16661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:01 Download gff for BS16661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-PA 1..853 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:29:33 Download gff for BS16661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 96..955 6..869 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:43:10 Download gff for BS16661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33217-RA 96..955 6..869 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:43:10 Download gff for BS16661.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 23126201..23126400 6..209 98 -> Plus
3L 23126717..23127251 210..744 99 -> Plus
3L 23127313..23127437 745..869 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:29:33 Download gff for BS16661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23119301..23119500 6..209 98 -> Plus
arm_3L 23119817..23120351 210..744 99 -> Plus
arm_3L 23120413..23120537 745..869 98   Plus

BS16661.pep Sequence

Translation from 16 to 2115

> BS16661.pep
MDQFITSTLKNRRRRSLGLRLLICYLKKSDIKLEENVNTWTYLLVQSCKL
PELCSYGDLIFSAMALLLDKIQSDGNVSKVFASAHLSKVLECLSHNEIYK
HNRSTIAALHTIKKCLKYYPKGIKTKSSSIKNILVLLIDSQNDEVVYQSG
ECWFLLHKIHGISDKEHMDNKTEWKDFQLSLLSNIQYIINRTIVMPDESV
NSPFMPNHFGAFTFVAVKDPFERASKAFRRIFNLIEYIKIALSKQFVFKK
NICVHQILSLIQNGLNAHVNQQNVRINHAYLETFFPQMHIKLLELLEIVI
KTCHTHLRMDFRLVLNILMEALEKTNKSMLLESNLKEVLNMRLVVYRVIS
LWCSTLQEGSHCEIIADTLIKEVFDDILTRSPTTKKSVNAPYMKLSPETL
FSMLKCSLSNEDYRMLSQQAHSCLQQFLLSSGHLIKHQLLKAVHHTLLGI
CVQMHSQSSKEPDLWDIWDGRLEVYKSFTVLLKLRNYGCPTPSEIIWNLL
HESRLFNNNIALKQSHSSNLETMLHPQKADINFKSVDNLKKTIAFSTNKT
ENRHDLLQTIKSPEDQLCNNESPLISAIETIANNKDNQKNPGYDNNSLNK
KKPFEVVCKNDSKDLIAEDTPKNINEIPDGPLLSSKINSSESLQGQPLEI
LNGNNVNSNLISSCCSAEESVKMFPSNLEKLDDAKMIADLEATFVGELK*

BS16661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:54:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG33217-PA 699 CG33217-PA 1..699 1..699 3619 100 Plus