Clone Sequence Records
BS16665.3prime Sequence
836 bp (835 high quality bases) assembled on 2007-05-15
> BS16665.3prime
ATGGTCTAGAAAGCTTTTATACGTAGTCCACCGGTTCTATGCCCAGGACG
GCCAGAGCCGTATTCAGGACCTGTCTCACCGCCTTGATCAGGTAGATCCT
GGCGTACAAGATCGGCATTAGTTCATCGCGCTTCTGAAGAAGGACCTTCT
TATGATAATAGAAGCGACTGAAGGCGGCAGCCAGGTTCTCAACATAGTGC
ACAAGCAGATGGAGACCGCAATGACCCTGGTCCAATTGATCCATTATGGA
CTCCATTAGCTCCGGAAAGGTAAGGAGGTAGCCATAAATCAACTCCCAGT
CAACATCATCCTCTAGAACGCTGAGATCGATCTCATCCAGCAGTGGCAGT
TTCTCATAGGCACAATTGTTAACCTCATAATTAAATTTGCGCAGCAGCGC
CTCCAGACGTGCTGAATTGTACAAGATGTAAGAAGCGCCCTTGCAAATGC
CAACTCCATTGCGCACCACACTCACGGCGCTGGAGTGGCGCACCACAAAG
AGATCCACAATCACGGCAGCGGCCGCAAGACGCTTCGTCAGCGTATCAAG
GCTACTCATTGGTACCGGACACATTCCGGAGCGCTGCGTGGCCATCAGCT
CCATGTGCTGGCAGCGCAGCTTTAAGTACTCGTCAACAGTCAATGAGCTG
GCGCCCTTATTTATCGGCTCCAAAACAGGACCGCATGTGAGGCACACATG
TTCCACGGGCTGCTTGCCGTTGCAGCATTTCTCCAGCTCGACAGTCACAC
AGATGGTGTCCTTCTGGCGGTCATTCGGCTCCACGAGGCGCCAAGACGAG
TAGTCAACCAGGCGCAGCAGTATCTTGTATAGCTGC
BS16665.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-PA | 1341 | CG8097-RA | 522..1341 | 836..17 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:30:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-RB | 1903 | CG8097-RB | 825..1645 | 836..16 | 4105 | 100 | Minus |
| CG8097-RA | 1672 | CG8097-RA | 825..1645 | 836..16 | 4105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15584324..15584641 | 620..303 | 1590 | 100 | Minus |
| X | 23542271 | X | 15584703..15584991 | 304..16 | 1445 | 100 | Minus |
| X | 23542271 | X | 15583983..15584199 | 836..620 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:30:55 has no hits.
BS16665.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:03 Download gff for
BS16665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-PA | 522..1341 | 17..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:09 Download gff for
BS16665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 825..1645 | 16..836 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:36:19 Download gff for
BS16665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 825..1645 | 16..836 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:36:19 Download gff for
BS16665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15583983..15584198 | 621..836 | 100 | -> | Minus |
| X | 15584324..15584639 | 305..620 | 100 | -> | Minus |
| X | 15584703..15584991 | 16..304 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:09 Download gff for
BS16665.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15478016..15478231 | 621..836 | 100 | -> | Minus |
| arm_X | 15478357..15478672 | 305..620 | 100 | -> | Minus |
| arm_X | 15478736..15479024 | 16..304 | 100 | | Minus |
BS16665.5prime Sequence
842 bp (740 high quality bases) assembled on 2007-05-15
> BS16665.5prime
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGGCCACGCAGCGCTCCGGAA
TGTGTCCGGTACCAATGAGTAGCCTTGATACGCTGACGAAGC
BS16665.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-PA | 1341 | CG8097-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:35:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-RB | 1903 | CG8097-RB | 304..1129 | 17..842 | 4130 | 100 | Plus |
| CG8097-RA | 1672 | CG8097-RA | 304..1129 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15583462..15584199 | 17..754 | 3690 | 100 | Plus |
| X | 23542271 | X | 15584324..15584412 | 754..842 | 445 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:49 has no hits.
BS16665.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:01:58 Download gff for
BS16665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:22 Download gff for
BS16665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 294..1129 | 8..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:26 Download gff for
BS16665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 294..1129 | 8..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:26 Download gff for
BS16665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15583452..15584198 | 8..753 | 99 | -> | Plus |
| X | 15584324..15584412 | 754..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:22 Download gff for
BS16665.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15477485..15478231 | 8..753 | 99 | -> | Plus |
| arm_X | 15478357..15478445 | 754..842 | 100 | | Plus |
BS16665.complete Sequence
1373 bp assembled on 2007-05-07
GenBank Submission: FJ638174
> BS16665.complete
GAAGTTATCAGTCGACATGGATTGTAATCCAAGGTTGCAGGTTGGCCAGC
AATTATTCGAATTTTTTACCAAGCCGGAAAAGCCGGATGAGTCTGGTGGC
GATGTAGCAGCTCCGTTGCTCTTGAAGAAATTCGGCAAGTTGATCCGTTA
CAACAACGATGATCTGACCGAGCAGGGTGACTTGACTTTGGCGGCCATCC
CGCGTTACTGGCAAAAATATTTAAAAAGCCAGGGTCTGAAGCTGCGCATC
GATGGCGACGAACTGCTCCCCAGCCCGGTGGACCGCCTGGAGTTGATGGA
GCATTCACGCAAGTGGCGTTTCCCGCTCGCCGAAATCACTGTGCTGAACA
AGGAACGCTACTCTCTGCGTTTCCAGCGCCATCCGATTATTGCACATGTG
CTTAACTCTGTGCTCACGCTGCGCGGCGATTACGGCCGTTCGGCAAATAA
CAACCAATCGCGCACCATATGCTTGCAGTTGCAAGCCGTTGTCGGAGCCG
TCGATGGCGGGCAGGACTTGCGCCACTATCGCTTGCAGCAGCTATACAAG
ATACTGCTGCGCCTGGTTGACTACTCGTCTTGGCGCCTCGTGGAGCCGAA
TGACCGCCAGAAGGACACCATCTGTGTGACTGTCGAGCTGGAGAAATGCT
GCAACGGCAAGCAGCCCGTGGAACATGTGTGCCTCACATGCGGTCCTGTT
TTGGAGCCGATAAATAAGGGCGCCAGCTCATTGACTGTTGACGAGTACTT
AAAGCTGCGCTGCCAGCACATGGAGCTGATGGCCACGCAGCGCTCCGGAA
TGTGTCCGGTACCAATGAGTAGCCTTGATACGCTGACGAAGCGTCTTGCG
GCCGCTGCCGTGATTGTGGATCTCTTTGTGGTGCGCCACTCCAGCGCCGT
GAGTGTGGTGCGCAATGGAGTTGGCATTTGCAAGGGCGCTTCTTACATCT
TGTACAATTCAGCACGTCTGGAGGCGCTGCTGCGCAAATTTAATTATGAG
GTTAACAATTGTGCCTATGAGAAACTGCCACTGCTGGATGAGATCGATCT
CAGCGTTCTAGAGGATGATGTTGACTGGGAGTTGATTTATGGCTACCTCC
TTACCTTTCCGGAGCTAATGGAGTCCATAATGGATCAATTGGACCAGGGT
CATTGCGGTCTCCATCTGCTTGTGCACTATGTTGAGAACCTGGCTGCCGC
CTTCAGTCGCTTCTATTATCATAAGAAGGTCCTTCTTCAGAAGCGCGATG
AACTAATGCCGATCTTGTACGCCAGGATCTACCTGATCAAGGCGGTGAGA
CAGGTCCTGAATACGGCTCTGGCCGTCCTGGGCATAGAACCGGTGGACTA
CGTATAAAAGCTTTCTAGACCAT
BS16665.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-RB | 1341 | CG8097-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| CG8097-RA | 1341 | CG8097-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-RB | 1903 | CG8097-RB | 304..1645 | 17..1358 | 6710 | 100 | Plus |
| CG8097-RA | 1672 | CG8097-RA | 304..1645 | 17..1358 | 6710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15583462..15584199 | 17..754 | 3690 | 100 | Plus |
| X | 23542271 | X | 15584324..15584641 | 754..1071 | 1590 | 100 | Plus |
| X | 23542271 | X | 15584703..15584991 | 1070..1358 | 1445 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:43:50 has no hits.
BS16665.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:18 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 1..1341 | 17..1357 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:26 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 292..1643 | 8..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:23:20 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 304..1642 | 17..1355 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:19 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 292..1643 | 8..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:37 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8097-RA | 304..1642 | 17..1355 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:37 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15584703..15584988 | 1070..1355 | 100 | | Plus |
| X | 15584324..15584639 | 754..1069 | 100 | -> | Plus |
| X | 15583462..15584198 | 17..753 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:23:20 Download gff for
BS16665.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15477495..15478231 | 17..753 | 100 | -> | Plus |
| arm_X | 15478357..15478672 | 754..1069 | 100 | -> | Plus |
| arm_X | 15478736..15479021 | 1070..1355 | 100 | | Plus |
BS16665.pep Sequence
Translation from 16 to 1356
> BS16665.pep
MDCNPRLQVGQQLFEFFTKPEKPDESGGDVAAPLLLKKFGKLIRYNNDDL
TEQGDLTLAAIPRYWQKYLKSQGLKLRIDGDELLPSPVDRLELMEHSRKW
RFPLAEITVLNKERYSLRFQRHPIIAHVLNSVLTLRGDYGRSANNNQSRT
ICLQLQAVVGAVDGGQDLRHYRLQQLYKILLRLVDYSSWRLVEPNDRQKD
TICVTVELEKCCNGKQPVEHVCLTCGPVLEPINKGASSLTVDEYLKLRCQ
HMELMATQRSGMCPVPMSSLDTLTKRLAAAAVIVDLFVVRHSSAVSVVRN
GVGICKGASYILYNSARLEALLRKFNYEVNNCAYEKLPLLDEIDLSVLED
DVDWELIYGYLLTFPELMESIMDQLDQGHCGLHLLVHYVENLAAAFSRFY
YHKKVLLQKRDELMPILYARIYLIKAVRQVLNTALAVLGIEPVDYV*
BS16665.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8097-PB | 446 | CG8097-PB | 1..446 | 1..446 | 2319 | 100 | Plus |
| CG8097-PA | 446 | CG8097-PA | 1..446 | 1..446 | 2319 | 100 | Plus |
