Clone Sequence Records
BS16667.3prime Sequence
874 bp (812 high quality bases) assembled on 2007-05-15
> BS16667.3prime
ATGGTCTAGAAAGCTTCTAACGATTCTTCTGGCGCTTGCGTCGCTTGGGA
AACACGTAGGAGGAGTGATTTTCTTGATGCCTCGCCTCGGCAGCAGTGGT
GGGTATTTTTTTGCTAGCCAACGTTGCCACCGGCTCAGCCAGTGCCTTGG
ACCTGGCTATGGAGGTTGGCGCTTCGATTGCATCCACCCAAGGCACACCG
AAATCATCCCGCGCCTCCATGTTGACCACGTTTTCGCCGAATGCCTGAAC
TGTCACCTCGTTGACGAATTGGATGGCCTCTATGTCCTCGGGCAGCGGGT
AGAAAGTGGAGGCGCGCAGAGGATCCAGCGCAACCAACACCTCGTCTTGG
TTCCGTCGCATCCGAAGCTGTTCAAGCCGTATCTGCTCCTTCATATAACG
TGCATCCCTACACTTTCGATCGACCTCATCCTTCACATATTTCTGGTGCC
GGCGCTCGAAGGTCGCATCGCTCAGTAATTCTGTGTCAATTTTATCCGAA
CTGGGTGGCACTGGGACATCCCGCCACTTGGGTATCTCCAGACTAGGGTT
ATCCGCCAGCAGCTCGTCGGCCTCCTCCAGGAAGAACTCGTTGTCACAGT
GGAACTCCTGATCCTCCCACGTTCTCGTGCTGTACGGAAACGTGGCAGTG
CGGAATCTGGACTGCAGTTTTCCCGATCTCGCCGTTGCCTTGCTGTACGT
GTGGGGTGAACAGTTGTTTAGCGTTTTTCGGATAGTCGAAGTGGTGCTGC
TAACACTGCTATTAGATTGAGGTGTCAGAGGAGTTGCTATTTGTTCAGCT
GCCTTGGATTTCGATTTTGCTGCAGATATTTCCTGGTCCATTGAGGATGT
AACCGCATGCTGTGGCGTTGAGCC
BS16667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10385-PA | 3120 | msl-1-RA | 2263..3120 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 2638..3495 | 874..17 | 4290 | 100 | Minus |
| msl-1-RA | 5021 | CG10385-RA | 2638..3495 | 874..17 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18685246..18686103 | 17..874 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:41:31 has no hits.
BS16667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:22 Download gff for
BS16667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10385-PA | 2263..3120 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:49 Download gff for
BS16667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 2638..3495 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:24:43 Download gff for
BS16667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 2638..3495 | 17..874 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:43 Download gff for
BS16667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18685246..18686103 | 17..874 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:49 Download gff for
BS16667.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18685246..18686103 | 17..874 | 100 | | Plus |
BS16667.5prime Sequence
791 bp (775 high quality bases) assembled on 2007-05-15
> BS16667.5prime
GAAGTTATCAGTCGACATGGACAAGCGATTCAAGTGGCCGCCCAAAAAGC
GGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGGCCGC
CAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATCAGCA
TCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGAGGAC
ATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCCAGCT
GAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCGTGTG
TGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTGAGGC
GCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAGCATA
GCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCGTGGT
GAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAGGCCG
CCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAGGAAC
GACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCCCGCA
GCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGGGAGC
GGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAATGCA
CTTCCCAGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATCACGC
TGGAGCGGTAACGAATCAGCCAGCCAGCAAACGCTCGGAGA
BS16667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10385-PA | 3120 | msl-1-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 375..1150 | 16..791 | 3880 | 100 | Plus |
| msl-1-RA | 5021 | CG10385-RA | 375..1150 | 16..791 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18687651..18688426 | 791..16 | 3880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:38:11 has no hits.
BS16667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:05 Download gff for
BS16667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10385-PA | 1..774 | 17..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:23 Download gff for
BS16667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 375..1149 | 16..790 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:16 Download gff for
BS16667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 375..1149 | 16..790 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:16 Download gff for
BS16667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18687652..18688426 | 16..790 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:23 Download gff for
BS16667.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18687652..18688426 | 16..790 | 100 | | Minus |
BS16667.complete Sequence
3152 bp assembled on 2008-08-15
GenBank Submission: KX806184
> BS16667.complete
GAAGTTATCAGTCGACATGGACAAGCGATTCAAGTGGCCGCCCAAAAAGC
GGGCCAACTACTTGGAATCGCCCTATCCCCACATACCGTCGCGTGGCCGC
CAAAGGAATCTGCACGGCCATCCCAATCAGACGCAGCATCTTCATCAGCA
TCCCGGGAAGATCTATGAGCGCCAGCAATATGGCAATGGTCGTGGAGGAC
ATGGCGGGGGTAATAACAACTACCGAAAGCTTTTGCATTCGCTGCCAGCT
GAGCATGGTGGCGGAGCCATGGCTCCTCCTTCCTCCGGCGGAACCGTGTG
TGCCGGCGCCGATATGGTCAAGCTCATCTCGGAGAACAACAACCTGAGGC
GCATGGTTATGTTGAACTTAAACCTGATGCAGGAGCAGACGGACAGCATA
GCGGCCAAGGACAAGGAGCTGGACGACCAAAGCGCTAAGATGAGCGTGGT
GAAGGCGCAGAATGAGGAATTAAAGCAGGCCGTTGCTCAGTTGGAGGCCG
CCAACCAGGAACTATGCAAACAGCTGCGGCGAAAGAACCAGCGAAGGAAC
GACAATGACGACGACGACGATGATCCCCCACTGCCACCTGCTGCCCCGCA
GCAGAAGTTGATACGTTGTCATGCTGAGACGCAAACTGTGTTTCGGGAGC
GGGAACAGGGCACACAAACGATAGATGCGCAGCCTCAATTCGCGAATGCA
CTTCCCAGGGGTATCAACATGAAGGAGTCTCCCGCTCTGGACCATCACGC
TGGAGCGGTAACGAATCAGCCAGCCAGCAAACGCTCGGAGAGCAAAGGCC
GCGGTGAATTCAACGGTAAAAAGGTGAGCACGTTTATTCTCCAGCGCATG
AATCAGGACTTCGAGCACCACATCCACGAGCAAACGGAAGTAGCAGAGGA
GCACGAGATGGAGGCACATAAGGAGCAAATATCTCAGGAAGAGGACCAAC
TGGTCGCTGAGGAAGATCATCTGCATATGCAAGAAGTGCACACCGAGGAA
GTCGTTGGAGGCGATATCTTTCATGATGCTTTGGAATCAATTGAAATGGA
AGTGGTCACCGAAGAGCTGGTTGATATGGAGGAGCATGGACAGTCCGTGG
ATGCCAACGGCCATATCGAGGAGGATGATGACGAGGACGACGAAGATGAC
GAGAATAGTGATAAAGACGATGACAGTGAAGAGGATGATTATCCGTGGAT
GCATAGCGATGCGGATGTAAACGCCAGAACTGAGGAAGAGCTCTGGCAGA
ATCAGAATTACCTTTTGGAATTGGACCCGACGGAGGAGAAGACCTGTGCG
CCTTCGGCCCATTCAACTCCCAATCACCAGCAGAAGTCTTCGACACAGGC
AGAGATAAGGAAAGAAGGAAATCAGAATCGGATAACTGAAAAGTTGTTGC
AACTAAAGCCTGAGCCAATGGTAGATGCATTAGAAGCGCCGATTCTCCCG
AAGTGGGTGGCTTTTAAGAAAAAGGATAAGGAACATGAATCAGTCCCCGA
GTCCCCAGAAGTACCCAAGCAGCAGCCGCATCAGGAAGATGCCATCGTTG
ATCATAATGCAATAAAGAATCAGTTGGAAGTTCCCAAGCCGGACTTAAAA
CCGAAGGACCAGCCCAAAGACGAACAGAGGCAGGATGGGCAGCTGGATGT
TCGCGTGGAACCACAAGAGGATGTTCGTAAGGTACAGAAGGAAACTCTGA
AAAGGCAACCAGAGGATGCACCTAAGCACCTTCCGAAAGCGGTAGCCCCA
AAGGTTACGAAAACATCCTCTCGAGAAAGCACGTTGCCCAAGGCAAACAC
CGCTGACATAAAAGACGCTCCCGCTCAAAAAGTAATAGCCAACCATCAGT
CCACCAAGACGCAAACGGATCCTGTAAAAACGCAGCGTTTGCAGGTTAAG
ATCAGGCAGTATGAAATGCATCCTGACATGAGAACCGGCTCCTCCGCCCC
GTCTGATATTCGGAAACAAAAGAACGTTGATCCAGTTTCGACGCCCGAGA
CGAAAACCATTAAAAGTAAAAGTATGTTGGTCAATGATAAAAAGACCACG
TCGGAAACGTCTCAGAGCCCAGATCAAGAAATAGATGTGGAAACAGTTAG
AAGAAAACTGGCGGAACATTTAAAAAAGGAGCTCCTAAGCCAGAGTCATT
CGTCACAGGTTACGCTCAAGAAAATAAGAGAGAGAGTCGCCACAAATCTA
ATATATCCACCACCCAGTGCACCAGTATCCTCAACAACAATAACCCCAGC
GCCTACGCCGTCAACGACACCAACGCCTGGCTCAACGCCACAGCATGCGG
TTACATCCTCAATGGACCAGGAAATATCTGCAGCAAAATCGAAATCCAAG
GCAGCTGAACAAATAGCAACTCCTCTGACACCTCAATCTAATAGCAGTGT
TAGCAGCACCACTTCGACTATCCGAAAAACGCTAAACAACTGTTCACCCC
ACACGTACAGCAAGGCAACGGCGAGATCGGGAAAACTGCAGTCCAGATTC
CGCACTGCCACGTTTCCGTACAGCACGAGAACGTGGGAGGATCAGGAGTT
CCACTGTGACAACGAGTTCTTCCTGGAGGAGGCCGACGAGCTGCTGGCGG
ATAACCCTAGTCTGGAGATACCCAAGTGGCGGGATGTCCCAGTGCCACCC
AGTTCGGATAAAATTGACACAGAATTACTGAGCGATGCGACCTTCGAGCG
CCGGCACCAGAAATATGTGAAGGATGAGGTCGATCGAAAGTGTAGGGATG
CACGTTATATGAAGGAGCAGATACGGCTTGAACAGCTTCGGATGCGACGG
AACCAAGACGAGGTGTTGGTTGCGCTGGATCCTCTGCGCGCCTCCACTTT
CTACCCGCTGCCCGAGGACATAGAGGCCATCCAATTCGTCAACGAGGTGA
CAGTTCAGGCATTCGGCGAAAACGTGGTCAACATGGAGGCGCGGGATGAT
TTCGGTGTGCCTTGGGTGGATGCAATCGAAGCGCCAACCTCCATAGCCAG
GTCCAAGGCACTGGCTGAGCCGGTGGCAACGTTGGCTAGCAAAAAAATAC
CCACCACTGCTGCCGAGGCGAGGCATCAAGAAAATCACTCCTCCTACGTG
TTTCCCAAGCGACGCAAGCGCCAGAAGAATCGTTAGAAGCTTTCTAGACC
AT
BS16667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:22:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3120 | CG10385-PB | 1..3120 | 17..3136 | 15600 | 100 | Plus |
| msl-1-RA | 3120 | CG10385-PA | 1..3120 | 17..3136 | 15600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-RB | 3757 | CG10385-RB | 375..3495 | 16..3136 | 15605 | 100 | Plus |
| msl-1-RA | 5021 | CG10385-RA | 375..3495 | 16..3136 | 15605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18685246..18687130 | 3136..1252 | 9425 | 100 | Minus |
| 2L | 23513712 | 2L | 18687187..18688426 | 1255..16 | 6200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:22:34 has no hits.
BS16667.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:21:00 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 371..3491 | 16..3136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:56 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 376..3495 | 17..3136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:07:36 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 372..3491 | 17..3136 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:52:25 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msl-1-RA | 376..3495 | 17..3136 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:52:25 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18685246..18687126 | 1256..3136 | 100 | <- | Minus |
| 2L | 18687187..18688425 | 17..1255 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:56 Download gff for
BS16667.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18685246..18687126 | 1256..3136 | 100 | <- | Minus |
| arm_2L | 18687187..18688425 | 17..1255 | 100 | | Minus |
BS16667.pep Sequence
Translation from 16 to 3135
> BS16667.pep
MDKRFKWPPKKRANYLESPYPHIPSRGRQRNLHGHPNQTQHLHQHPGKIY
ERQQYGNGRGGHGGGNNNYRKLLHSLPAEHGGGAMAPPSSGGTVCAGADM
VKLISENNNLRRMVMLNLNLMQEQTDSIAAKDKELDDQSAKMSVVKAQNE
ELKQAVAQLEAANQELCKQLRRKNQRRNDNDDDDDDPPLPPAAPQQKLIR
CHAETQTVFREREQGTQTIDAQPQFANALPRGINMKESPALDHHAGAVTN
QPASKRSESKGRGEFNGKKVSTFILQRMNQDFEHHIHEQTEVAEEHEMEA
HKEQISQEEDQLVAEEDHLHMQEVHTEEVVGGDIFHDALESIEMEVVTEE
LVDMEEHGQSVDANGHIEEDDDEDDEDDENSDKDDDSEEDDYPWMHSDAD
VNARTEEELWQNQNYLLELDPTEEKTCAPSAHSTPNHQQKSSTQAEIRKE
GNQNRITEKLLQLKPEPMVDALEAPILPKWVAFKKKDKEHESVPESPEVP
KQQPHQEDAIVDHNAIKNQLEVPKPDLKPKDQPKDEQRQDGQLDVRVEPQ
EDVRKVQKETLKRQPEDAPKHLPKAVAPKVTKTSSRESTLPKANTADIKD
APAQKVIANHQSTKTQTDPVKTQRLQVKIRQYEMHPDMRTGSSAPSDIRK
QKNVDPVSTPETKTIKSKSMLVNDKKTTSETSQSPDQEIDVETVRRKLAE
HLKKELLSQSHSSQVTLKKIRERVATNLIYPPPSAPVSSTTITPAPTPST
TPTPGSTPQHAVTSSMDQEISAAKSKSKAAEQIATPLTPQSNSSVSSTTS
TIRKTLNNCSPHTYSKATARSGKLQSRFRTATFPYSTRTWEDQEFHCDNE
FFLEEADELLADNPSLEIPKWRDVPVPPSSDKIDTELLSDATFERRHQKY
VKDEVDRKCRDARYMKEQIRLEQLRMRRNQDEVLVALDPLRASTFYPLPE
DIEAIQFVNEVTVQAFGENVVNMEARDDFGVPWVDAIEAPTSIARSKALA
EPVATLASKKIPTTAAEARHQENHSSYVFPKRRKRQKNR*
BS16667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msl-1-PB | 1039 | CG10385-PB | 1..1039 | 1..1039 | 5425 | 100 | Plus |
| msl-1-PA | 1039 | CG10385-PA | 1..1039 | 1..1039 | 5425 | 100 | Plus |
| CG13185-PD | 5526 | CG13185-PD | 4662..5242 | 123..722 | 181 | 19.6 | Plus |
| ImpE1-PC | 1616 | CG32356-PC | 590..1228 | 288..894 | 162 | 20.1 | Plus |
| ImpE1-PA | 1616 | CG32356-PA | 590..1228 | 288..894 | 162 | 20.1 | Plus |
