Clone Sequence Records
BS16668.5prime Sequence
919 bp (793 high quality bases) assembled on 2007-05-15
> BS16668.5prime
GAAGTTATCAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCG
CAGCAGCAGCCGCACATCAGACGACCCATCTTCACCACCATCACCATCAT
CATCCGTATTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACA
GCAACAACAGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTAC
CAGTGGGTGGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGG
ACCAACGACGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGA
GCTATGGAATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCC
GGGCATGGTCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTG
GAGCGGAAGATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAA
GATGTTCGTGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGT
ATGCCTTCAAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGC
GGCGGTGGGTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGT
GCCGAATCCCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAA
ACGGACTGGCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCG
GCGGGCAACGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGG
CTCACAGACCGTCATGCAGCACAGACGCATCAAGACCAAAGAGCTGAAAT
ATTTCGGAGCGATGGGCCTGAACATACCCATGTTGATAGCGAGCAGCCAG
ACGCTGGACAGTTGGAATACGGCGGGTCAGTACTCGCCACCGATATCGGG
ATCCGGCGGCCGGTGGATC
BS16668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PA | 2106 | CG5953-RA | 1..894 | 17..910 | 4470 | 100 | Plus |
| CG5953-PB | 2106 | CG5953-RB | 1..894 | 17..910 | 4470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..1314 | 17..919 | 4490 | 99.9 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..1576 | 17..919 | 4490 | 99.9 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..1314 | 17..919 | 4490 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16527390..16528184 | 811..17 | 3975 | 100 | Minus |
| 2L | 23513712 | 2L | 16511348..16511447 | 910..811 | 500 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 03:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7161..7209 | 113..161 | 109 | 74 | Plus |
BS16668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:09 Download gff for
BS16668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-PB | 1..902 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:30 Download gff for
BS16668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..1314 | 17..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:21 Download gff for
BS16668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..1314 | 17..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:21 Download gff for
BS16668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16511340..16511446 | 812..919 | 99 | <- | Minus |
| 2L | 16527390..16528184 | 17..811 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:30 Download gff for
BS16668.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16511340..16511446 | 812..919 | 99 | <- | Minus |
| arm_2L | 16527390..16528184 | 17..811 | 100 | | Minus |
BS16668.3prime Sequence
529 bp (528 high quality bases) assembled on 2007-05-15
> BS16668.3prime
ATGGTCTAGAAAGCTTTCACTTGGGCTGTATCCGCGCCGAGCGTTCCAGC
TCGTTGAATTGCCCATAGTACAACACCTCGCTGATTAGCTTCTCCGCAAT
GATTCGTTGCGTGCGATCCATGGTCCGCAGTTTGAGGGACACATTCGATC
CAATAAAATCGCAATCATCTCGATTCAGGGACTCGGCATAAAAGGCAGAC
GCTGCAACGGCCGCCTGGGCGGAAACGCTGCTCTTGATGTGACCCGGACT
GGCGGCCGATTCGGTGGCCTCATCGTTATCCGGATCGGGTTCCTCGCCAT
CCGACATGCTCTCCCTGGAGCCCAGCAGCGAATTCATTAGCATATGACCC
GCACTGCCGGCGCCGGTCAGTTTTCGCATATTTAAGGGCATGGCGGGTGT
GCTGGCATCACTGCCTCTGGGTGGCAGGATGAAAGCACCGAAATTGGCCT
TCGCCTGGGCGACTCTCAGGTCCTGGGCCATGTCCACCAATTGGAGCCGA
CTCTCCTCGCCCGCTGAGCTATAGGAACG
BS16668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PA | 2106 | CG5953-RA | 1594..2106 | 529..17 | 2565 | 100 | Minus |
| CG5953-PB | 2106 | CG5953-RB | 1594..2106 | 529..17 | 2565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:49:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 2006..2518 | 529..17 | 2565 | 100 | Minus |
| CG5953-RC | 2535 | CG5953-RC | 1007..1519 | 529..17 | 2565 | 100 | Minus |
| CG5953-RB | 3796 | CG5953-RB | 2268..2780 | 529..17 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:49:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510136..16510648 | 17..529 | 2565 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:49:36 has no hits.
BS16668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:26 Download gff for
BS16668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-PB | 1594..2106 | 17..529 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:16 Download gff for
BS16668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 2268..2783 | 14..529 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:31:43 Download gff for
BS16668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 2268..2783 | 14..529 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:31:43 Download gff for
BS16668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510133..16510648 | 14..529 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:16 Download gff for
BS16668.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16510133..16510648 | 14..529 | 99 | | Plus |
BS16668.complete Sequence
2138 bp assembled on 2010-05-21
GenBank Submission: KX801513
> BS16668.complete
GAAGTTATCAGTCGACATGAACTTCAATCCGGCCAGCGTGGTAGCCGCCG
CAGCAGCAGCCGCACATCAGACGACCCATCTTCACCACCATCACCATCAT
CATCCGTATTTAAGCCATCACCAGAGCAGCATCACCCAACCACAAGGACA
GCAACAACAGCTGATCCCACTGCCTGTCGGCGGAGGAGGCGGAAGTTTAC
CAGTGGGTGGCAGTGGCGGTGGCGATACATCGCCCAAGATCATGGAGTGG
ACCAACGACGATGCTCTGGAGCTGATTGAGCAGTATCGCTGCCATACAGA
GCTATGGAATCGTGCCGATCCCAAGTACAAGGATAAACTATGTCGATTCC
GGGCATGGTCGGAAATAGCCGAGCGTTTCGGTTGTAGCAAGGCGGAAGTG
GAGCGGAAGATGAACGTACTGCTCACACAGTATCGCCGGGAGAAGCACAA
GATGTTCGTGAAGATATACCAGGGCATACAGCCCAATCCGTCCAAATGGT
ATGCCTTCAAGCGATTCGATTTCATGGAGGCGGGCGGCGGCAGCCTGAGC
GGCGGTGGGTCCGTGGGATCCGGTGTTAATGCCGCCAGCGGAAACCTGGT
GCCGAATCCCGTTTCCTCATCCGCTGCCGCTGCCGCCCACAACGGGCTAA
ACGGACTGGCTGCCGCGGCAGCGGCCTACGAAAGCGGTACGATTGCGGCG
GCGGGCAACGGAGGAGCACCACCCACTGTACCAGGTGGCGGAGCACCTGG
CTCACAGACCGTCATGCAGCACAGACGCATCAAGACCAAAGAGCTGAAAT
ATTTCGGAGCGATGGGCCTGAACATACCCATGTTGATAGCGAGCAGCCAG
ACGCTGGACAGTTGGAATACGGCGGGTCAGTACTCGCCACCGATATCGGG
ATCCGGCGGCGGTGGATCCGAGCGAGGAGGAAGTGCTGGAGGCGGCGGAG
TGCCGCCACAGCAACTGCGAGTACCGCTGCCGATGAGCTATCATGGCGGA
GCTGGTGGTGGAAGCAGCAGTAGTGATTTCCAGCAGAGTCCCCTGAAGAC
CATGGACACCTCGGACAATGAGGATAATAACAATACCAAGGAGGATGTGG
CGGCGGCAGCGGCACTGGGACAACTGGCTGCCAAGGTCGAGCTGCGATCG
CCGGCGGGCGCAGGTCCTGGCGGTGGCGGTGGTTCGAGCAGTAGGGAAGC
CAATGATCCAACCAGCGATCCCATCAAGCCCGACCGCACTCTAAGCGAAG
CTGGCAGCAGTCCCATACCGAATACCAATATGCACGAGGCGCACAAGAAT
CACCTGCTAAACAGTCCCGCCGGCGGAAGGTCAGTCACGCCGCGGCAGGC
GCATGAGCAGCTGCATCACCATCCGCACACGCAACACCACCTGCAACAGC
AGCAGCAACAACTGCAGCAGCAGCATCAGCAGTTGCAGCAGCAACAACTG
CAACAGCATCAGCAACAGCAGCAGCTGCATCACGGCCACGAGGAATTGGA
CATCAAGCAGGAGTTGGTGGACTATTTCCATGGTCAGGCGGCTGGCGGTG
GTGGTGGTGGTGGTGGTGGTGTTGTTGGTCCTGCACCACCGCCACCACCC
GAATCGCATCGTTCCTATAGCTCAGCGGGCGAGGAGAGTCGGCTCCAATT
GGTGGACATGGCCCAGGACCTGAGAGTCGCCCAGGCGAAGGCCAATTTCG
GTGCTTTCATCCTGCCACCCAGAGGCAGTGATGCCAGCACACCCGCCATG
CCCTTAAATATGCGAAAACTGACCGGCGCCGGCAGTGCGGGTCATATGCT
AATGAATTCGCTGCTGGGCTCCAGGGAGAGCATGTCGGATGGCGAGGAAC
CCGATCCGGATAACGATGAGGCCACCGAATCGGCCGCCAGTCCGGGTCAC
ATCAAGAGCAGCGTTTCCGCCCAGGCGGCCGTTGCAGCGTCTGCCTTTTA
TGCCGAGTCCCTGAATCGAGATGATTGCGATTTTATTGGATCGAATGTGT
CCCTCAAACTGCGGACCATGGATCGCACGCAACGAATCATTGCGGAGAAG
CTAATCAGCGAGGTGTTGTACTATGGGCAATTCAACGAGCTGGAACGCTC
GGCGCGGATACAGCCCAAGTGAAAGCTTTCTAGACCAT
BS16668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 2106 | CG5953-PD | 1..2106 | 17..2122 | 10530 | 100 | Plus |
| CG5953-RB | 2106 | CG5953-PB | 1..2106 | 17..2122 | 10530 | 100 | Plus |
| CG5953-RA | 2106 | CG5953-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RD | 4576 | CG5953-RD | 413..2518 | 17..2122 | 10530 | 100 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 675..2780 | 17..2122 | 10530 | 100 | Plus |
| CG5953-RA | 3534 | CG5953-RA | 413..2518 | 17..2122 | 10530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510136..16511447 | 2122..811 | 6560 | 100 | Minus |
| 2L | 23513712 | 2L | 16527390..16528184 | 811..17 | 3975 | 100 | Minus |
| 2R | 25286936 | 2R | 13823840..13823954 | 1477..1364 | 210 | 80.9 | Minus |
| X | 23542271 | X | 21333282..21333375 | 1473..1380 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:45:58 has no hits.
BS16668.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-21 09:32:14 Download gff for
BS16668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RB | 675..2779 | 17..2121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:25 Download gff for
BS16668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..2517 | 17..2121 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:25 Download gff for
BS16668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RA | 413..2517 | 17..2121 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:25 Download gff for
BS16668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510137..16511446 | 812..2121 | 100 | <- | Minus |
| 2L | 16527390..16528184 | 17..811 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:25 Download gff for
BS16668.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16510137..16511446 | 812..2121 | 100 | <- | Minus |
| arm_2L | 16527390..16528184 | 17..811 | 100 | | Minus |
BS16668.pep Sequence
Translation from 16 to 2121
> BS16668.pep
MNFNPASVVAAAAAAAHQTTHLHHHHHHHPYLSHHQSSITQPQGQQQQLI
PLPVGGGGGSLPVGGSGGGDTSPKIMEWTNDDALELIEQYRCHTELWNRA
DPKYKDKLCRFRAWSEIAERFGCSKAEVERKMNVLLTQYRREKHKMFVKI
YQGIQPNPSKWYAFKRFDFMEAGGGSLSGGGSVGSGVNAASGNLVPNPVS
SSAAAAAHNGLNGLAAAAAAYESGTIAAAGNGGAPPTVPGGGAPGSQTVM
QHRRIKTKELKYFGAMGLNIPMLIASSQTLDSWNTAGQYSPPISGSGGGG
SERGGSAGGGGVPPQQLRVPLPMSYHGGAGGGSSSSDFQQSPLKTMDTSD
NEDNNNTKEDVAAAAALGQLAAKVELRSPAGAGPGGGGGSSSREANDPTS
DPIKPDRTLSEAGSSPIPNTNMHEAHKNHLLNSPAGGRSVTPRQAHEQLH
HHPHTQHHLQQQQQQLQQQHQQLQQQQLQQHQQQQQLHHGHEELDIKQEL
VDYFHGQAAGGGGGGGGGVVGPAPPPPPESHRSYSSAGEESRLQLVDMAQ
DLRVAQAKANFGAFILPPRGSDASTPAMPLNMRKLTGAGSAGHMLMNSLL
GSRESMSDGEEPDPDNDEATESAASPGHIKSSVSAQAAVAASAFYAESLN
RDDCDFIGSNVSLKLRTMDRTQRIIAEKLISEVLYYGQFNELERSARIQP
K*
BS16668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PD | 701 | CG5953-PD | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PB | 701 | CG5953-PB | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PA | 701 | CG5953-PA | 1..701 | 1..701 | 3695 | 100 | Plus |
| CG5953-PC | 473 | CG5953-PC | 38..473 | 266..701 | 2274 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 280..486 | 265..508 | 205 | 31.2 | Plus |
