Clone Sequence Records
BS16669.3prime Sequence
333 bp (333 high quality bases) assembled on 2007-05-15
> BS16669.3prime
ATGGTCTAGAAAGCTTTTAAGAACGATTGTATTTGCCCCAAATGTGCAGC
ATGAAGACGGAAGCGATGAACAGCAGCGACATGACCAGCACGGGTACGGG
ACCAACTTTGATACCGGGCGAGTCGTCCGTGTAGAAACGCCACATGCCAC
CAGTTCCGGCTCCGCCGGGTGCACGGCTCCGGGCCGCTGTGGTGCTGGTG
GTGGTCTTGCGCTGCTTCAGGGTGCTGCCGCCTCCGGATCCGGCGCTACG
TGGCGCCGACAATTTGCTGGGGGAGCGCGATCCGCTGCCCACGGACGTTG
AACTGGCTGGAGCGGGCATGTCGACTGATAACT
BS16669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10130-PA | 303 | Sec61beta-RA | 1..303 | 319..17 | 1490 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..432 | 319..17 | 1500 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 317..105 | 1065 | 100 | Minus |
2R | 25286936 | 2R | 14619234..14619321 | 104..17 | 425 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:11:52 has no hits.
BS16669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:35 Download gff for
BS16669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10130-PA | 1..303 | 17..319 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:00 Download gff for
BS16669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 13..319 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:54:30 Download gff for
BS16669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 13..319 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:54:30 Download gff for
BS16669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618949..14619170 | 105..327 | 98 | -> | Minus |
2R | 14619234..14619323 | 13..104 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:00 Download gff for
BS16669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506454..10506675 | 105..327 | 98 | -> | Minus |
arm_2R | 10506739..10506828 | 13..104 | 96 | | Minus |
BS16669.5prime Sequence
333 bp (333 high quality bases) assembled on 2007-05-15
> BS16669.5prime
GAAGTTATCAGTCGACATGCCCGCTCCAGCCAGTTCAACGTCCGTGGGCA
GCGGATCGCGCTCCCCCAGCAAATTGTCGGCGCCACGTAGCGCCGGATCC
GGAGGCGGCAGCACCCTGAAGCAGCGCAAGACCACCACCAGCACCACAGC
GGCCCGGAGCCGTGCACCCGGCGGAGCCGGAACTGGTGGCATGTGGCGTT
TCTACACGGACGACTCGCCCGGTATCAAAGTTGGTCCCGTACCCGTGCTG
GTCATGTCGCTGCTGTTCATCGCTTCCGTCTTCATGCTGCACATTTGGGG
CAAATACAATCGTTCTTAAAAGCTTTCTAGACC
BS16669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10130-PA | 303 | Sec61beta-RA | 1..303 | 17..319 | 1490 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:16:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..432 | 17..319 | 1500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:16:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 19..231 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14619234..14619321 | 232..319 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:16:29 has no hits.
BS16669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:14 Download gff for
BS16669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10130-PA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:43 Download gff for
BS16669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:52:08 Download gff for
BS16669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..434 | 17..323 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:52:08 Download gff for
BS16669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618949..14619170 | 9..231 | 98 | -> | Plus |
2R | 14619234..14619323 | 232..323 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:43 Download gff for
BS16669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506454..10506675 | 9..231 | 98 | -> | Plus |
arm_2R | 10506739..10506828 | 232..323 | 96 | | Plus |
BS16669.complete Sequence
335 bp assembled on 2007-05-07
GenBank Submission: FJ638176
> BS16669.complete
GAAGTTATCAGTCGACATGCCCGCTCCAGCCAGTTCAACGTCCGTGGGCA
GCGGATCGCGCTCCCCCAGCAAATTGTCGGCGCCACGTAGCGCCGGATCC
GGAGGCGGCAGCACCCTGAAGCAGCGCAAGACCACCACCAGCACCACAGC
GGCCCGGAGCCGTGCACCCGGCGGAGCCGGAACTGGTGGCATGTGGCGTT
TCTACACGGACGACTCGCCCGGTATCAAAGTTGGTCCCGTACCCGTGCTG
GTCATGTCGCTGCTGTTCATCGCTTCCGTCTTCATGCTGCACATTTGGGG
CAAATACAATCGTTCTTAAAAGCTTTCTAGACCAT
BS16669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 303 | CG10130-PA | 1..303 | 17..319 | 1500 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-RA | 792 | CG10130-RA | 130..432 | 17..319 | 1500 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:34:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14618958..14619170 | 19..231 | 1065 | 100 | Plus |
2R | 25286936 | 2R | 14619234..14619321 | 232..319 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:34:50 has no hits.
BS16669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:28 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:34:09 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 174..478 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:46 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..430 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:28 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 174..478 | 17..323 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:12 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sec61beta-RA | 130..430 | 17..317 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:12 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14618957..14619170 | 17..231 | 99 | -> | Plus |
2R | 14619234..14619319 | 232..317 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:46 Download gff for
BS16669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10506462..10506675 | 17..231 | 99 | -> | Plus |
arm_2R | 10506739..10506824 | 232..317 | 98 | | Plus |
BS16669.pep Sequence
Translation from 16 to 318
> BS16669.pep
MPAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRA
PGGAGTGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS
*
BS16669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sec61beta-PA | 100 | CG10130-PA | 1..100 | 1..100 | 514 | 100 | Plus |