Clone Sequence Records
BS16670.3prime Sequence
888 bp (802 high quality bases) assembled on 2007-05-15
> BS16670.3prime
ATGGTCTAGAAAGCTTTTATTGAGTGTCGCGGAGTAGGGCGCCGTCATCC
AAGCCGGCGATCCATTCGCAGATCCGTTTAAAGAACTCGACATCCACCAG
CTCGATAATGCGCACGTTCTCCGGATACTTTTCGCGCTCCCGCAAATGAT
CGAGAACCATCTGGCCGCGAGTGTGGGTGCCCCGCAGATCCACGGTGGCG
TGCCAGGTGTTGTGCCTCCGGATCAAGTGATCCTCGAATAGCCAAACGGC
CACGGCAATGGCATCGCATGGATTCCACGTATCGATCCCGTACTGCTCGA
TCATTGGCAGCCACTGGGCGGCTTCCACCTGGTTGAGCATGGTAATTGCT
GGATGTCCGGCTTCCTTGGCCCTTGCGGCGAAATCCTTCAGGCGCCAGTT
AATGTGTATATTGAATCTCTCCGGGAGGCAGGCCTCCCACGGCAGTATGG
TGATGGGACAGCGTGTCCTCAGCAGCACCGTGTGCGCCGCCTCCGGATCC
GAGTGAAAGTTGAACTCCGCCGAACGCGAGGAGTTGCCCACGCCCTGATA
GTTGCCGCCCATAATGAACAGATCACGAAAGTTATTCCCAAACTCCGGAC
CGTACATCGTATAGCCCAGGGCAAGATTCGTCAGCGGGCCCACGGCAAAT
ATGGTGATCTGTTTGGGCCTGGAACGGCAGAGATCATGGATGGCTGTCAC
TGCGTGCTCCGCCTGCACGATGTCCTCCAACTGAAGAGCGCAGTCGTCGG
TGAGACAGTCACCGAATCCGTCGCGGCCATGGAAATACTTTTTTTCATCC
TCCAGAGAGGGAATGAGGGCATCTACGGCGCCCAGGTATATGGGAATATC
TGTGCGCTTGCAGGCATCCAGAATCCGTCGCATATTGC
BS16670.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-PA | 1089 | CG12177-RA | 218..1089 | 888..17 | 4360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:07:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-RC | 1509 | CG12177-RC | 565..1437 | 888..16 | 4365 | 100 | Minus |
| CG12177-RB | 1210 | CG12177-RB | 266..1138 | 888..16 | 4365 | 100 | Minus |
| CG12177-RA | 1805 | CG12177-RA | 463..1335 | 888..16 | 4365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13678855..13679301 | 401..847 | 2235 | 100 | Plus |
| X | 23542271 | X | 13678369..13678753 | 16..400 | 1925 | 100 | Plus |
| X | 23542271 | X | 13679896..13679936 | 848..888 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:07:48 has no hits.
BS16670.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:06:59 Download gff for
BS16670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-PA | 218..1089 | 17..888 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:18:01 Download gff for
BS16670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 463..1344 | 8..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:56:45 Download gff for
BS16670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 463..1344 | 8..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:56:45 Download gff for
BS16670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13678360..13678753 | 8..400 | 98 | <- | Plus |
| X | 13678855..13679301 | 401..847 | 100 | <- | Plus |
| X | 13679896..13679936 | 848..888 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:18:01 Download gff for
BS16670.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13573929..13573969 | 848..888 | 100 | | Plus |
| arm_X | 13572393..13572786 | 8..400 | 98 | <- | Plus |
| arm_X | 13572888..13573334 | 401..847 | 100 | <- | Plus |
BS16670.complete Sequence
1121 bp assembled on 2010-07-02
GenBank Submission: KX803588
> BS16670.complete
GAAGTTATCAGTCGACATGGCGGACGGACGCATAGTGGAAAACGGCAGAG
GAGGAGGCGGTGAAGGAGTAGCAGCAGCACCATCGCCCAGATACGCGATC
CTCGACTGTGATGGGGGTAGCGACGATGCCTGGGCACTGCTCCTGCTTCT
GCATGCGGCTAAGAGCCATGGGATTCATCTGCTGGCCATCACCACAATGG
GATGCGGCAATACCAGCAGGGAGAATGCGGCACGCAATATGCGACGGATT
CTGGATGCCTGCAAGCGCACAGATATTCCCATATACCTGGGCGCCGTAGA
TGCCCTCATTCCCTCTCTGGAGGATGAAAAAAAGTATTTCCATGGCCGCG
ACGGATTCGGTGACTGTCTCACCGACGACTGCGCTCTTCAGTTGGAGGAC
ATCGTGCAGGCGGAGCACGCAGTGACAGCCATCCATGATCTCTGCCGTTC
CAGGCCCAAACAGATCACCATATTTGCCGTGGGCCCGCTGACGAATCTTG
CCCTGGGCTATACGATGTACGGTCCGGAGTTTGGGAATAACTTTCGTGAT
CTGTTCATTATGGGCGGCAACTATCAGGGCGTGGGCAACTCCTCGCGTTC
GGCGGAGTTCAACTTTCACTCGGATCCGGAGGCGGCGCACACGGTGCTGC
TGAGGACACGCTGTCCCATCACCATACTGCCGTGGGAGGCCTGCCTCCCG
GAGAGATTCAATATACACATTAACTGGCGCCTGAAGGATTTCGCCGCAAG
GGCCAAGGAAGCCGGACATCCAGCAATTACCATGCTCAACCAGGTGGAAG
CCGCCCAGTGGCTGCCAATGATCGAGCAGTACGGGATCGATACGTGGAAT
CCATGCGATGCCATTGCCGTGGCCGTTTGGCTATTCGAGGATCACTTGAT
CCGGAGGCACAACACCTGGCACGCCACCGTGGATCTGCGGGGCACCCACA
CTCGCGGCCAGATGGTTCTCGATCATTTGCGGGAGCGCGAAAAGTATCCG
GAGAACGTGCGCATTATCGAGCTGGTGGATGTCGAGTTCTTTAAACGGAT
CTGCGAATGGATCGCCGGCTTGGATGACGGCGCCCTACTCCGCGACACTC
AATAAAAGCTTTCTAGACCAT
BS16670.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-RC | 1089 | CG12177-PC | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG12177-RB | 1089 | CG12177-PB | 1..1089 | 17..1105 | 5445 | 100 | Plus |
| CG12177-RA | 1089 | CG12177-PA | 1..1089 | 17..1105 | 5445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-RC | 1509 | CG12177-RC | 348..1437 | 17..1106 | 5450 | 100 | Plus |
| CG12177-RB | 1210 | CG12177-RB | 49..1138 | 17..1106 | 5450 | 100 | Plus |
| CG12177-RA | 1805 | CG12177-RA | 246..1335 | 17..1106 | 5450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13678855..13679301 | 721..275 | 2235 | 100 | Minus |
| X | 23542271 | X | 13678369..13678753 | 1106..722 | 1925 | 100 | Minus |
| X | 23542271 | X | 13679896..13680153 | 274..17 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:23:26 has no hits.
BS16670.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-02 13:34:46 Download gff for
BS16670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 244..1330 | 17..1103 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:18:12 Download gff for
BS16670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 246..1332 | 17..1103 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:28:14 Download gff for
BS16670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12177-RA | 246..1332 | 17..1103 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:28:14 Download gff for
BS16670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13678372..13678753 | 722..1103 | 100 | <- | Minus |
| X | 13678855..13679301 | 275..721 | 100 | <- | Minus |
| X | 13679896..13680153 | 17..274 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:18:12 Download gff for
BS16670.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13572405..13572786 | 722..1103 | 100 | <- | Minus |
| arm_X | 13572888..13573334 | 275..721 | 100 | <- | Minus |
| arm_X | 13573929..13574186 | 17..274 | 100 | | Minus |
BS16670.pep Sequence
Translation from 16 to 1104
> BS16670.pep
MADGRIVENGRGGGGEGVAAAPSPRYAILDCDGGSDDAWALLLLLHAAKS
HGIHLLAITTMGCGNTSRENAARNMRRILDACKRTDIPIYLGAVDALIPS
LEDEKKYFHGRDGFGDCLTDDCALQLEDIVQAEHAVTAIHDLCRSRPKQI
TIFAVGPLTNLALGYTMYGPEFGNNFRDLFIMGGNYQGVGNSSRSAEFNF
HSDPEAAHTVLLRTRCPITILPWEACLPERFNIHINWRLKDFAARAKEAG
HPAITMLNQVEAAQWLPMIEQYGIDTWNPCDAIAVAVWLFEDHLIRRHNT
WHATVDLRGTHTRGQMVLDHLREREKYPENVRIIELVDVEFFKRICEWIA
GLDDGALLRDTQ*
BS16670.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12177-PC | 362 | CG12177-PC | 1..362 | 1..362 | 1949 | 100 | Plus |
| CG12177-PB | 362 | CG12177-PB | 1..362 | 1..362 | 1949 | 100 | Plus |
| CG12177-PA | 362 | CG12177-PA | 1..362 | 1..362 | 1949 | 100 | Plus |
| CG11158-PA | 344 | CG11158-PA | 6..301 | 25..325 | 583 | 41.2 | Plus |
| CG5418-PA | 355 | CG5418-PA | 10..351 | 25..362 | 570 | 38.7 | Plus |
