Clone Sequence Records
BS16672.5prime Sequence
780 bp (757 high quality bases) assembled on 2007-05-15
> BS16672.5prime
GAAGTTATCAGTCGACATGACCAGGACGTGCAGAGTGTGTGGCTGCGACG
ACGGACGCTACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACC
TTCGTCCAGCTGCTGGTCGAGCTAACGCGAATCGAGGTGGTCATGGCGCA
AGCTGAGAAGTTCCCACAGTGGCTGTGCTACGCGTGTGCCGAGAAGCTGG
AGAGCACCTACGATTTTGTGCTGCAGGCACGTCGAACACACGAGCTGTGG
CTGCAGAAAATCGGGGATTCTTTGAATGGGGATGACGAGATGGAGGGCAC
TGCGGCCTTGGAATGCCTGCGTGAGACACCCATCCACCTGTTTGAGATTG
AAGGCGTGACCATCAAGACGGAGGAACTGGCTTCAACGCAACAGGCGCCC
AAGGCAGATCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACA
CTTTAGCGATTCCGATGAAGACCTGGATGATGTGCCTCTGCGTCAACGTA
AGATAGCAGCCTCGGTCTGCGGCTCTGACACGACGAAGGAAAATGTTTGC
GAGCTGTGCAACAAGGTCTTCAGATATGTCACCAATCTGTATCGTCACAA
GCAGAGGGACCACGGAATTCTGGGCAAGAACGGAGAGGATTATGAAGAAG
ACTATTACAAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCG
CTGGTGAAGCACAAACACAAAGAGCACGGATCCAGTCTCCTGTCGAATAA
TTCCGGGCGAAAGATGCCGTCAACTTTGGC
BS16672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-PA | 2802 | CG10669-RA | 1..764 | 17..780 | 3820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:21:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 3310 | CG10669-RB | 97..860 | 17..780 | 3820 | 100 | Plus |
| CG10669-RA | 3008 | CG10669-RA | 97..860 | 17..780 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25334441..25334952 | 646..135 | 2545 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25334252..25334392 | 780..640 | 705 | 100 | Minus |
| 3R | 32079331 | 3R | 25335024..25335147 | 140..17 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:21:04 has no hits.
BS16672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:07 Download gff for
BS16672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-PA | 1..764 | 17..780 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:23 Download gff for
BS16672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 92..860 | 10..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:48:20 Download gff for
BS16672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 92..860 | 10..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:48:20 Download gff for
BS16672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25335028..25335152 | 10..136 | 97 | | Minus |
| 3R | 25334252..25334392 | 640..780 | 100 | <- | Minus |
| 3R | 25334448..25334950 | 137..639 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:23 Download gff for
BS16672.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21159974..21160114 | 640..780 | 100 | <- | Minus |
| arm_3R | 21160170..21160672 | 137..639 | 100 | <- | Minus |
| arm_3R | 21160750..21160874 | 10..136 | 97 | | Minus |
BS16672.complete Sequence
2834 bp assembled on 2008-08-15
GenBank Submission: KX801940
> BS16672.complete
GAAGTTATCAGTCGACATGACCAGGACGTGCAGAGTGTGTGGCTGCGACG
ACGGACGCTACTGGATTGAAACGCCCGTGGAGAAGTACGCGGAGAAGACC
TTCGTCCAGCTGCTGGTCGAGCTAACGCGAATCGAGGTGGTCATGGCGCA
AGCTGAGAAGTTCCCACAGTGGCTGTGCTACGCGTGTGCCGAGAAGCTGG
AGAGCACCTACGATTTTGTGCTGCAGGCACGTCGAACACACGAGCTGTGG
CTGCAGAAAATCGGGGATTCTTTGAATGGGGATGACGAGATGGAGGGCAC
TGCGGCCTTGGAATGCCTGCGTGAGACACCCATCCACCTGTTTGAGATTG
AAGGCGTGACCATCAAGACGGAGGAACTGGCTTCAACGCAACAGGCGCCC
AAGGCAGATCCTTTAGTGCGCCCGCGCATTGTCAAACGGAGTATTGTACA
CTTTAGCGATTCCGATGAAGACCTGGATGATGTGCCTCTGCGTCAACGTA
AGATAGCAGCCTCGGTCTGCGGCTCTGACACGACGAAGGAAAATGTTTGC
GAGCTGTGCAACAAGGTCTTCAGATATGTCACCAATCTGTATCGTCACAA
GCAGAGGGACCACGGAATTCTGGGCAAGAACGGAGAGGATTATGAAGAAG
ACTATTACAAGTGCGATCTGTGCGATAAAACCTACAAGTACGTGATGGCG
CTGGTGAAGCACAAACACAAAGAGCACGGATCCAGTCTCCTGTCGAATAA
TTCCGGGCGAAAGATGCCGTCAACTTTGGCCGAAGATGCCAATCCATACA
GTCCAGCATCCATCTCTGAAACATCCACTAATCAAAGCAGAACCAACAAC
GACTCCCTGGTACACAGCATCATCAAGGCAGTGGTACTCTCCGATGAGGA
TGGCCACAGTGGTGAAGATAGCTACTACAATTGCGATCAGTGTAGTAAAT
CGTACAAGTACATTGTCAGCTTGATCAAGCACAAGCACAAAGAGCACCTA
GACAAGGAGTCATACAAGCAGTCGGATGACGAAGACGATCGGCCTCTGGC
CTCCACATCCGCCTCGGCAAGTGCACCAACTGCGAAACCTTCTAGGATCA
ACCGAAGAGTCGACGGGTTCGACTTTCATCGCAGCGAGCCAAACGGAGCC
AAGGAAATCAAGTGCATGATATGCTTGCGACGGTTTACTAAACTACGGGA
GCTTAGGAATCATCTACAGAACCATCCCACTGATTTCGATTTTGAGGCGC
ATGGCGAGCCTATCGAGCGCATTGCGGAAGGATTTTTCAAAACAGCCGTT
GAGTCCACGGCAGAGGGCTTAAAGCGGCGAATATTTAGAGATCTCAGAAT
GGGCGTCTATGGACGCTACTATTCCATCACAAATCAAGCGCGTTATGAAA
TGACCCTAGATAGCTCGGATACGGACAGTGATGGCGATGGCGACGACAAT
GTCGTCATCCGACGAAGTTACTCCTGTGAATTGTGCGACTCTCCGGAGGC
TAGGTGGCCGCGCAAGTACCTGCTACACCAGCACCATCAGAAGGAGCACA
CATGGCTAGACGCCCCTCATGTCTGCCAGCGCTGCGACTCGCGGTTTCTC
AATCTCCAGCTTCTGAAGCACCATACCAGCCAGCTGTGTCAAAACACTTT
GAAGCGCTTTATGTGCGACAAGTGCCCTCAGCGATTCTTTTGGCGTCGCA
ATTTGCGCGCACACCTTGTCGAGCACAAGTGCAAGCAAGAATCTTATCCA
TGTGACCAATGCTCTCGTAGCTTTCAAGACAAGAGCGCCGTGACCAAACA
TAAGCTCATGATGCATCGGGATAGTAACATGGAGCTCCTTCCCTGCCGCT
GGTGCACCCGTACGTTCTACCGTCCTGCCCTGCTGTACAAGCATTTACAG
AGACACGGATTCACTGGTCAGGACCTACCTCTGGCTGAAACCTTGCTAGC
GGATGCGTCAAAGCCGGCGGGTCCCAAGAGCGTCCAGTGCAAGATTTGTG
ACATCCAGTTTGTCAGCGTGGCAGACTTGCGAAGGCACATATCTATGCAG
GGCCACAGCGATCAACCCTCGGCGTACATGATTAGCACAGCAACTGGCTT
TGAGCTCCTGCTGGACGACACAGACGACAGTGATGAGGAAACATCGGGCA
GGACGTACTCTTGCGACCTTTGTGATCTGAATTTCCGACGCCGACGAGAG
ATCAGCGAGCATCAGTACTCCCTCCACAGCTTTGACAAACTGCCACATAA
CTGCGAGCACTGCATTTTCAAGACGGTTGATAAGAACATGCTGCATCAGC
ATCTTCGCACGCAGTGTATGAACACCGAAAAGAAGTTTGCCTGCATGCGC
TGCGGCTACAAGTTCATGTGGGAGGAGAACTTGGCCCAGCACCTTTCCAC
CCAGCATTCCAAGCAACCCGCCGTTCCGGAACAGCAGCCACCGCTGAGGA
GAAAGAGGCGCTTCCGCTACCAGTGCCCCCATTGCTGGCGTTCCTTTGTC
GTTCAGCCCAGCCTGGATAAACACATTCGGGACATGCATGTGGCCAAGAA
AAATCCAGGAAAAAAGTATCTCTGCTCGCTGTGCGGCCTGGAGTCACTGA
CCCCCAACAAGCTTAACATCCATATGCGGCGACACACGGGCGAGAAGCCA
TTCAAGTGCGATCTCTGCGACATGCGCTTCACGGTCCACTACGAGTTGAA
GGTGCACCGTCGGAAGCATACTGGCGAGCGACCCTACCAATGCACGTTTT
GCGACAAGGACTTCGCTCGACCAGACAAACTAAGACGGCACGTCTTCATG
CACAACGACAAGTCGTAGAAGCTTTCTAGACCAT
BS16672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 2802 | CG10669-PB | 1..2802 | 17..2818 | 14010 | 100 | Plus |
| CG10669-RA | 2802 | CG10669-PA | 1..2802 | 17..2818 | 14010 | 100 | Plus |
| CG18476-RA | 2811 | CG18476-PA | 2415..2469 | 2620..2674 | 185 | 89.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-RB | 3310 | CG10669-RB | 97..2899 | 17..2819 | 14015 | 100 | Plus |
| CG10669-RA | 3008 | CG10669-RA | 97..2899 | 17..2819 | 14015 | 100 | Plus |
| CG18476-RA | 2946 | CG18476-RA | 2515..2569 | 2620..2674 | 185 | 89.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25333124..25333973 | 1735..886 | 4250 | 100 | Minus |
| 3R | 32079331 | 3R | 25332374..25332924 | 2284..1734 | 2755 | 100 | Minus |
| 3R | 32079331 | 3R | 25331774..25332310 | 2819..2283 | 2685 | 100 | Minus |
| 3R | 32079331 | 3R | 25334441..25334952 | 646..135 | 2545 | 99.8 | Minus |
| 3R | 32079331 | 3R | 25334147..25334392 | 885..640 | 1230 | 100 | Minus |
| 3R | 32079331 | 3R | 25335024..25335147 | 140..17 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 11675297..11675351 | 2674..2620 | 185 | 89.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:27:53 has no hits.
BS16672.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:20:44 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 133..2942 | 10..2823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:27 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 97..2898 | 17..2818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:19:53 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 138..2939 | 17..2818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:19:08 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10669-RA | 97..2898 | 17..2818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:19:08 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25334147..25334392 | 640..885 | 100 | <- | Minus |
| 3R | 25331775..25332308 | 2285..2818 | 100 | <- | Minus |
| 3R | 25332374..25332922 | 1736..2284 | 100 | <- | Minus |
| 3R | 25333124..25333973 | 886..1735 | 100 | <- | Minus |
| 3R | 25334448..25334950 | 137..639 | 100 | <- | Minus |
| 3R | 25335028..25335147 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:27 Download gff for
BS16672.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21157497..21158030 | 2285..2818 | 100 | <- | Minus |
| arm_3R | 21158096..21158644 | 1736..2284 | 100 | <- | Minus |
| arm_3R | 21158846..21159695 | 886..1735 | 100 | <- | Minus |
| arm_3R | 21159869..21160114 | 640..885 | 100 | <- | Minus |
| arm_3R | 21160170..21160672 | 137..639 | 100 | <- | Minus |
| arm_3R | 21160750..21160869 | 17..136 | 100 | | Minus |
BS16672.pep Sequence
Translation from 16 to 2817
> BS16672.pep
MTRTCRVCGCDDGRYWIETPVEKYAEKTFVQLLVELTRIEVVMAQAEKFP
QWLCYACAEKLESTYDFVLQARRTHELWLQKIGDSLNGDDEMEGTAALEC
LRETPIHLFEIEGVTIKTEELASTQQAPKADPLVRPRIVKRSIVHFSDSD
EDLDDVPLRQRKIAASVCGSDTTKENVCELCNKVFRYVTNLYRHKQRDHG
ILGKNGEDYEEDYYKCDLCDKTYKYVMALVKHKHKEHGSSLLSNNSGRKM
PSTLAEDANPYSPASISETSTNQSRTNNDSLVHSIIKAVVLSDEDGHSGE
DSYYNCDQCSKSYKYIVSLIKHKHKEHLDKESYKQSDDEDDRPLASTSAS
ASAPTAKPSRINRRVDGFDFHRSEPNGAKEIKCMICLRRFTKLRELRNHL
QNHPTDFDFEAHGEPIERIAEGFFKTAVESTAEGLKRRIFRDLRMGVYGR
YYSITNQARYEMTLDSSDTDSDGDGDDNVVIRRSYSCELCDSPEARWPRK
YLLHQHHQKEHTWLDAPHVCQRCDSRFLNLQLLKHHTSQLCQNTLKRFMC
DKCPQRFFWRRNLRAHLVEHKCKQESYPCDQCSRSFQDKSAVTKHKLMMH
RDSNMELLPCRWCTRTFYRPALLYKHLQRHGFTGQDLPLAETLLADASKP
AGPKSVQCKICDIQFVSVADLRRHISMQGHSDQPSAYMISTATGFELLLD
DTDDSDEETSGRTYSCDLCDLNFRRRREISEHQYSLHSFDKLPHNCEHCI
FKTVDKNMLHQHLRTQCMNTEKKFACMRCGYKFMWEENLAQHLSTQHSKQ
PAVPEQQPPLRRKRRFRYQCPHCWRSFVVQPSLDKHIRDMHVAKKNPGKK
YLCSLCGLESLTPNKLNIHMRRHTGEKPFKCDLCDMRFTVHYELKVHRRK
HTGERPYQCTFCDKDFARPDKLRRHVFMHNDKS*
BS16672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:43:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10669-PB | 933 | CG10669-PB | 1..933 | 1..933 | 5094 | 100 | Plus |
| CG10669-PA | 933 | CG10669-PA | 1..933 | 1..933 | 5094 | 100 | Plus |
| CG18476-PA | 936 | CG18476-PA | 198..867 | 298..930 | 1447 | 41.4 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 569..1348 | 207..930 | 1072 | 32.8 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 7..1060 | 5..897 | 560 | 23 | Plus |
| CG5245-PA | 501 | CG5245-PA | 108..466 | 483..929 | 360 | 23.4 | Plus |
| CG18476-PA | 936 | CG18476-PA | 7..921 | 5..928 | 347 | 21.9 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 230..799 | 300..921 | 321 | 23.3 | Plus |
| CG11902-PB | 1426 | CG11902-PB | 866..1418 | 178..812 | 313 | 22.3 | Plus |
| CG18476-PA | 936 | CG18476-PA | 200..543 | 573..932 | 237 | 25.7 | Plus |
