Clone Sequence Records
BS16676.3prime Sequence
519 bp (519 high quality bases) assembled on 2007-05-15
> BS16676.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGATCATATCACAGTCGCTATTGATG
AGCAGCTTCTTGCTCATGTAGCTGGTGAGGCACTGCACCAAGAAGTTGGG
AATGGTCCAGAGGTTGAAGCTGAGGGCCAGGAGTCGCCATTGCCGGAGAA
TGAGCCGGATGTCGGATAGCCAGACGAAGCGGTGGCCCACTCTCTTGGTG
ACCTGGCTAGTGACGCCCCTGACCACGCCCCCCGCGATACCGGAAACGCT
GACTCTCCGCCTCTTGGTGGGGGATCCTTCCTCCGATCCGGATCCACTTC
CGGAATTCTGTCGAGAGTGGGTGCGGGATCGGGAGCCGGGACTATTGCCT
CCGGAGGTCAAGTACCTGTGATCGTATTCCGGCTTGAGGTCGACGCGTGG
CGCTATCTGGATGCGGTCCACTGTGTCGCAGATCTCCGCATTGCTGATGA
GGATGCCCGCCACAATGTACATCATCTTGAAGACCCTCACAGTATGTGAC
ATCATGTCGACTGATAACT
BS16676.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 489 | CG13912-RA | 1..489 | 505..17 | 2445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..706 | 505..17 | 2445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190360 | 487..17 | 2355 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:55:37 has no hits.
BS16676.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:10 Download gff for
BS16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-PA | 1..489 | 17..505 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:07 Download gff for
BS16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 11..513 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:59 Download gff for
BS16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 11..513 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:59 Download gff for
BS16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189892..1190364 | 11..485 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:07 Download gff for
BS16676.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189892..1190364 | 11..485 | 99 | | Minus |
BS16676.5prime Sequence
519 bp (519 high quality bases) assembled on 2007-05-15
> BS16676.5prime
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGTAGAAGCTTTCTAGACC
BS16676.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 489 | CG13912-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..706 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190360 | 35..505 | 2355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 05:59:29 has no hits.
BS16676.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:10 Download gff for
BS16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-PA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:51 Download gff for
BS16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 9..511 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:41 Download gff for
BS16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 210..710 | 9..511 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:41 Download gff for
BS16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189892..1190364 | 37..511 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:51 Download gff for
BS16676.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189892..1190364 | 37..511 | 99 | | Plus |
BS16676.complete Sequence
521 bp assembled on 2007-05-07
GenBank Submission: FJ638178
> BS16676.complete
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGTAGAAGCTTTCTAGACCAT
BS16676.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 489 | CG13912-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-RA | 818 | CG13912-RA | 218..706 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1189890..1190360 | 35..505 | 2355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:16:22 has no hits.
BS16676.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:22 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 1..489 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:31 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 208..704 | 9..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:36 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 218..706 | 17..505 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:22 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 208..704 | 9..505 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:31 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13912-RA | 218..706 | 17..505 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:31 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1189805..1189824 | 17..36 | 100 | -> | Plus |
3L | 1189892..1190360 | 37..505 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:36 Download gff for
BS16676.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1189805..1189824 | 17..36 | 100 | -> | Plus |
arm_3L | 1189892..1190360 | 37..505 | 100 | | Plus |
BS16676.pep Sequence
Translation from 16 to 504
> BS16676.pep
MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT
SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS
QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK
LLINSDCDMIYK*
BS16676.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13912-PA | 162 | CG13912-PA | 1..162 | 1..162 | 837 | 100 | Plus |