Clone BS16676 Report

Search the DGRC for BS16676

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG13912-RA
Protein status:BS16676.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16676.3prime Sequence

519 bp (519 high quality bases) assembled on 2007-05-15

> BS16676.3prime
ATGGTCTAGAAAGCTTCTACTTGTAGATCATATCACAGTCGCTATTGATG
AGCAGCTTCTTGCTCATGTAGCTGGTGAGGCACTGCACCAAGAAGTTGGG
AATGGTCCAGAGGTTGAAGCTGAGGGCCAGGAGTCGCCATTGCCGGAGAA
TGAGCCGGATGTCGGATAGCCAGACGAAGCGGTGGCCCACTCTCTTGGTG
ACCTGGCTAGTGACGCCCCTGACCACGCCCCCCGCGATACCGGAAACGCT
GACTCTCCGCCTCTTGGTGGGGGATCCTTCCTCCGATCCGGATCCACTTC
CGGAATTCTGTCGAGAGTGGGTGCGGGATCGGGAGCCGGGACTATTGCCT
CCGGAGGTCAAGTACCTGTGATCGTATTCCGGCTTGAGGTCGACGCGTGG
CGCTATCTGGATGCGGTCCACTGTGTCGCAGATCTCCGCATTGCTGATGA
GGATGCCCGCCACAATGTACATCATCTTGAAGACCCTCACAGTATGTGAC
ATCATGTCGACTGATAACT

BS16676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 489 CG13912-RA 1..489 505..17 2445 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..706 505..17 2445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190360 487..17 2355 100 Minus
Blast to na_te.dros performed on 2015-02-13 11:55:37 has no hits.

BS16676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:10 Download gff for BS16676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-PA 1..489 17..505 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:47:07 Download gff for BS16676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 11..513 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:59 Download gff for BS16676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 11..513 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:59 Download gff for BS16676.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1189892..1190364 11..485 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:47:07 Download gff for BS16676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189892..1190364 11..485 99   Minus

BS16676.5prime Sequence

519 bp (519 high quality bases) assembled on 2007-05-15

> BS16676.5prime
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGTAGAAGCTTTCTAGACC

BS16676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 489 CG13912-RA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..706 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190360 35..505 2355 100 Plus
Blast to na_te.dros performed on 2015-02-13 05:59:29 has no hits.

BS16676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:10 Download gff for BS16676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-PA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:47:51 Download gff for BS16676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 9..511 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:41 Download gff for BS16676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 210..710 9..511 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:41 Download gff for BS16676.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1189892..1190364 37..511 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:47:51 Download gff for BS16676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189892..1190364 37..511 99   Plus

BS16676.complete Sequence

521 bp assembled on 2007-05-07

GenBank Submission: FJ638178

> BS16676.complete
GAAGTTATCAGTCGACATGATGTCACATACTGTGAGGGTCTTCAAGATGA
TGTACATTGTGGCGGGCATCCTCATCAGCAATGCGGAGATCTGCGACACA
GTGGACCGCATCCAGATAGCGCCACGCGTCGACCTCAAGCCGGAATACGA
TCACAGGTACTTGACCTCCGGAGGCAATAGTCCCGGCTCCCGATCCCGCA
CCCACTCTCGACAGAATTCCGGAAGTGGATCCGGATCGGAGGAAGGATCC
CCCACCAAGAGGCGGAGAGTCAGCGTTTCCGGTATCGCGGGGGGCGTGGT
CAGGGGCGTCACTAGCCAGGTCACCAAGAGAGTGGGCCACCGCTTCGTCT
GGCTATCCGACATCCGGCTCATTCTCCGGCAATGGCGACTCCTGGCCCTC
AGCTTCAACCTCTGGACCATTCCCAACTTCTTGGTGCAGTGCCTCACCAG
CTACATGAGCAAGAAGCTGCTCATCAATAGCGACTGTGATATGATCTACA
AGTAGAAGCTTTCTAGACCAT

BS16676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 489 CG13912-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-RA 818 CG13912-RA 218..706 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1189890..1190360 35..505 2355 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:16:22 has no hits.

BS16676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:22 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 1..489 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:31 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 208..704 9..505 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:44:36 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 218..706 17..505 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:22 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 208..704 9..505 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:49:31 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
CG13912-RA 218..706 17..505 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:49:31 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1189805..1189824 17..36 100 -> Plus
3L 1189892..1190360 37..505 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:44:36 Download gff for BS16676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1189805..1189824 17..36 100 -> Plus
arm_3L 1189892..1190360 37..505 100   Plus

BS16676.pep Sequence

Translation from 16 to 504

> BS16676.pep
MMSHTVRVFKMMYIVAGILISNAEICDTVDRIQIAPRVDLKPEYDHRYLT
SGGNSPGSRSRTHSRQNSGSGSGSEEGSPTKRRRVSVSGIAGGVVRGVTS
QVTKRVGHRFVWLSDIRLILRQWRLLALSFNLWTIPNFLVQCLTSYMSKK
LLINSDCDMIYK*

BS16676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13912-PA 162 CG13912-PA 1..162 1..162 837 100 Plus