Clone BS16678 Report

Search the DGRC for BS16678

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG10470-RA
Protein status:BS16678.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16678.3prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-15

> BS16678.3prime
ATGGTCTAGAAAGCTTCTATTTGAACTGGCCTGGAGCAGGACCAAACAGA
CCTACACCCTGCTTGCTTGCGGCGCGCGATGGGGCAAAACCCAGAAGCTT
TTGGATGTTCTGACGAATGGACATGGTGCACAGGATGTAGAGGAATATAA
AGGAGCAGTCCGTATAGTCGTCACCGGACAAATTTCGGTGACTTAACCCC
TGGATCCAGGAGATTGGTGTGAAGGGCAGCTGGGCAACCACACGGCCGTC
GAAGATGCTGTTGAACATACTCAACAGGGCGGTGAAGGCGAATCCCGTGG
CGAACATGGTCTTCATCTTGACAAGCGAGAGATCGCGGTTGTTGTTTTTC
AGTTTTTCCTCGTCGCGCTCGATCTTCTTCTTTACCGCTTTGTCCAGGGA
GTCCCCATGGATTTCCTTGCGGCGCTCCAGCTTTTTGCTCTGCTTTTCCA
CCTCGGTCTTTAGCTTTTGGTACTTCTCCGTCCGGTAAACCATCACCCAT
GTAAGACCTTCGCCCAGGAAGGCGGTGCAAACCGATATAAAAACAATTAA
TATTGTGTCGGACCACATGTCGACTGATAACT

BS16678.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 552 CG10470-RA 1..552 568..17 2760 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..651 568..17 2760 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049834 429..17 2065 100 Minus
2L 23513712 2L 19049285..19049364 509..430 400 100 Minus
2L 23513712 2L 19049175..19049237 568..506 315 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:30 has no hits.

BS16678.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:25 Download gff for BS16678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:55 Download gff for BS16678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..651 17..568 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:13 Download gff for BS16678.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..651 17..568 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:13 Download gff for BS16678.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 508..568 100 -> Minus
2L 19049287..19049364 430..507 100 -> Minus
2L 19049422..19049834 17..429 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:55 Download gff for BS16678.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 508..568 100 -> Minus
arm_2L 19049287..19049364 430..507 100 -> Minus
arm_2L 19049422..19049834 17..429 100   Minus

BS16678.5prime Sequence

582 bp (582 high quality bases) assembled on 2007-05-15

> BS16678.5prime
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAATAGAAGCTTTCTAGACC

BS16678.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 552 CG10470-RA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..651 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049834 156..568 2065 100 Plus
2L 23513712 2L 19049285..19049364 76..155 400 100 Plus
2L 23513712 2L 19049175..19049237 17..79 315 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:28:12 has no hits.

BS16678.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:26 Download gff for BS16678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:56 Download gff for BS16678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..651 17..568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:36 Download gff for BS16678.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..651 17..568 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:36 Download gff for BS16678.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 17..77 100 -> Plus
2L 19049287..19049364 78..155 100 -> Plus
2L 19049422..19049834 156..568 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:56 Download gff for BS16678.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 17..77 100 -> Plus
arm_2L 19049287..19049364 78..155 100 -> Plus
arm_2L 19049422..19049834 156..568 100   Plus

BS16678.complete Sequence

584 bp assembled on 2007-05-07

GenBank Submission: FJ638179

> BS16678.complete
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAATAGAAGCTTTCTAGACCAT

BS16678.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 552 CG10470-PA 1..552 17..568 2760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-RA 701 CG10470-RA 100..651 17..568 2760 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19049422..19049834 156..568 2065 100 Plus
2L 23513712 2L 19049285..19049364 76..155 400 100 Plus
2L 23513712 2L 19049175..19049237 17..79 315 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:30 has no hits.

BS16678.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:25 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:32 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 97..648 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..645 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:25 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 97..648 17..568 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:21 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
CG10470-RA 100..645 17..562 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:21 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19049175..19049235 17..77 100 -> Plus
2L 19049287..19049364 78..155 100 -> Plus
2L 19049422..19049828 156..562 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for BS16678.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19049175..19049235 17..77 100 -> Plus
arm_2L 19049287..19049364 78..155 100 -> Plus
arm_2L 19049422..19049828 156..562 100   Plus

BS16678.pep Sequence

Translation from 16 to 567

> BS16678.pep
MWSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERR
KEIHGDSLDKAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLS
MFNSIFDGRVVAQLPFTPISWIQGLSHRNLSGDDYTDCSFIFLYILCTMS
IRQNIQKLLGFAPSRAASKQGVGLFGPAPGQFK*

BS16678.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10470-PA 183 CG10470-PA 1..183 1..183 944 100 Plus