Clone Sequence Records
BS16678.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-15
> BS16678.3prime
ATGGTCTAGAAAGCTTCTATTTGAACTGGCCTGGAGCAGGACCAAACAGA
CCTACACCCTGCTTGCTTGCGGCGCGCGATGGGGCAAAACCCAGAAGCTT
TTGGATGTTCTGACGAATGGACATGGTGCACAGGATGTAGAGGAATATAA
AGGAGCAGTCCGTATAGTCGTCACCGGACAAATTTCGGTGACTTAACCCC
TGGATCCAGGAGATTGGTGTGAAGGGCAGCTGGGCAACCACACGGCCGTC
GAAGATGCTGTTGAACATACTCAACAGGGCGGTGAAGGCGAATCCCGTGG
CGAACATGGTCTTCATCTTGACAAGCGAGAGATCGCGGTTGTTGTTTTTC
AGTTTTTCCTCGTCGCGCTCGATCTTCTTCTTTACCGCTTTGTCCAGGGA
GTCCCCATGGATTTCCTTGCGGCGCTCCAGCTTTTTGCTCTGCTTTTCCA
CCTCGGTCTTTAGCTTTTGGTACTTCTCCGTCCGGTAAACCATCACCCAT
GTAAGACCTTCGCCCAGGAAGGCGGTGCAAACCGATATAAAAACAATTAA
TATTGTGTCGGACCACATGTCGACTGATAACT
BS16678.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 552 | CG10470-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..651 | 568..17 | 2760 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049834 | 429..17 | 2065 | 100 | Minus |
2L | 23513712 | 2L | 19049285..19049364 | 509..430 | 400 | 100 | Minus |
2L | 23513712 | 2L | 19049175..19049237 | 568..506 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:30 has no hits.
BS16678.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:25 Download gff for
BS16678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:55 Download gff for
BS16678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..651 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:13 Download gff for
BS16678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..651 | 17..568 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:13 Download gff for
BS16678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049175..19049235 | 508..568 | 100 | -> | Minus |
2L | 19049287..19049364 | 430..507 | 100 | -> | Minus |
2L | 19049422..19049834 | 17..429 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:55 Download gff for
BS16678.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 508..568 | 100 | -> | Minus |
arm_2L | 19049287..19049364 | 430..507 | 100 | -> | Minus |
arm_2L | 19049422..19049834 | 17..429 | 100 | | Minus |
BS16678.5prime Sequence
582 bp (582 high quality bases) assembled on 2007-05-15
> BS16678.5prime
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAATAGAAGCTTTCTAGACC
BS16678.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 552 | CG10470-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..651 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:28:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049834 | 156..568 | 2065 | 100 | Plus |
2L | 23513712 | 2L | 19049285..19049364 | 76..155 | 400 | 100 | Plus |
2L | 23513712 | 2L | 19049175..19049237 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:28:12 has no hits.
BS16678.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:26 Download gff for
BS16678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:56 Download gff for
BS16678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..651 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:53:36 Download gff for
BS16678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..651 | 17..568 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:53:36 Download gff for
BS16678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
2L | 19049422..19049834 | 156..568 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:56 Download gff for
BS16678.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
arm_2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
arm_2L | 19049422..19049834 | 156..568 | 100 | | Plus |
BS16678.complete Sequence
584 bp assembled on 2007-05-07
GenBank Submission: FJ638179
> BS16678.complete
GAAGTTATCAGTCGACATGTGGTCCGACACAATATTAATTGTTTTTATAT
CGGTTTGCACCGCCTTCCTGGGCGAAGGTCTTACATGGGTGATGGTTTAC
CGGACGGAGAAGTACCAAAAGCTAAAGACCGAGGTGGAAAAGCAGAGCAA
AAAGCTGGAGCGCCGCAAGGAAATCCATGGGGACTCCCTGGACAAAGCGG
TAAAGAAGAAGATCGAGCGCGACGAGGAAAAACTGAAAAACAACAACCGC
GATCTCTCGCTTGTCAAGATGAAGACCATGTTCGCCACGGGATTCGCCTT
CACCGCCCTGTTGAGTATGTTCAACAGCATCTTCGACGGCCGTGTGGTTG
CCCAGCTGCCCTTCACACCAATCTCCTGGATCCAGGGGTTAAGTCACCGA
AATTTGTCCGGTGACGACTATACGGACTGCTCCTTTATATTCCTCTACAT
CCTGTGCACCATGTCCATTCGTCAGAACATCCAAAAGCTTCTGGGTTTTG
CCCCATCGCGCGCCGCAAGCAAGCAGGGTGTAGGTCTGTTTGGTCCTGCT
CCAGGCCAGTTCAAATAGAAGCTTTCTAGACCAT
BS16678.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 552 | CG10470-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-RA | 701 | CG10470-RA | 100..651 | 17..568 | 2760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19049422..19049834 | 156..568 | 2065 | 100 | Plus |
2L | 23513712 | 2L | 19049285..19049364 | 76..155 | 400 | 100 | Plus |
2L | 23513712 | 2L | 19049175..19049237 | 17..79 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:30 has no hits.
BS16678.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:25 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:32 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 97..648 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:32 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..645 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:25 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 97..648 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:21 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10470-RA | 100..645 | 17..562 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:21 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
2L | 19049422..19049828 | 156..562 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:32 Download gff for
BS16678.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19049175..19049235 | 17..77 | 100 | -> | Plus |
arm_2L | 19049287..19049364 | 78..155 | 100 | -> | Plus |
arm_2L | 19049422..19049828 | 156..562 | 100 | | Plus |
BS16678.pep Sequence
Translation from 16 to 567
> BS16678.pep
MWSDTILIVFISVCTAFLGEGLTWVMVYRTEKYQKLKTEVEKQSKKLERR
KEIHGDSLDKAVKKKIERDEEKLKNNNRDLSLVKMKTMFATGFAFTALLS
MFNSIFDGRVVAQLPFTPISWIQGLSHRNLSGDDYTDCSFIFLYILCTMS
IRQNIQKLLGFAPSRAASKQGVGLFGPAPGQFK*
BS16678.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10470-PA | 183 | CG10470-PA | 1..183 | 1..183 | 944 | 100 | Plus |