Clone Sequence Records
BS16679.3prime Sequence
908 bp (831 high quality bases) assembled on 2007-05-15
> BS16679.3prime
ATGGTCTAGAAAGCTTCTACTTGGCCTCGGTTCCGGCCAGCAGATACTCC
AAAGCGAAGAGCCGTATAATCAGTGCCAGGTTGTCCGTCGTCGCATAATC
GATCACGCTGGCGTTATCGTCGGGCGTATGCCATACACTGGGAAAGGGCA
CCGGAATGAGGTGCAAGATCGGCACATTTCGCCGCAGGAAGGGTATGTGA
TCGTCCTCGATGAAAGAGGATCGCATGGCCTGCGACTGGAAGTAGCGGGT
GGGGTCGCGCTGGGCAACTCCACTGCTGGCATAGCGCTCCAGGAGCTGCA
ACTTGGCAAGACGTGTCTCCACGGACTGGATACGCATGTACCAGGACTCG
GTGTTTTCGAAGAAGCTGTAGAATGCCGGATCGGGGGCTCCCAACAGATC
CAGGAGCACCAGCATATCTATTCTATCAAGTTTTCCTTCATGGTGCCACT
TTTTGGCCAGGTGTCGTGCTCCATAGATGGAGTCCTTGGGTCCCCACTCC
TCAAAAGCCTCCTCGCCATCGAAGAACAAGAGCATCAAACTCAGTTTGCT
CTTCTTGAGGGGTTTCAACTGCTCCTGAAGCACCTGGGCCAGGTTGAGGA
GCATGGCACAGGGCACTGCCGAGTCGGTGGCCCCCAGGAATTCCACTCCA
GGCATGTATTTGCTATCATAATGGCAGGACAGCACCAGATATCTCTCAGC
ATTTGGATTCAGGGTGGCGATGATGTTGTGGAAATGCAATTTGCCTTTGA
TGGGAGCGTGATCATGAAAGCTGTTTACTTCCACATCCCAGTCTAGATCC
CTCAAACTCTGGACGATGTATTCGCGAACGATGCTAATGATTTGTGTGCC
CACAACTCGAGGTATAAGGATTTTGTCAATGGCTTCCCTTAGGTGTAGCT
TATCGGAT
BS16679.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PB | 1065 | CG5976-RB | 246..1065 | 836..17 | 4100 | 100 | Minus |
CG5976-PA | 1059 | CG5976-RA | 240..1059 | 836..17 | 4100 | 100 | Minus |
CG5976-PB | 1065 | CG5976-RB | 174..237 | 908..845 | 320 | 100 | Minus |
CG5976-PA | 1059 | CG5976-RA | 168..231 | 908..845 | 320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 593..1484 | 908..17 | 4415 | 99.8 | Minus |
isoQC-RB | 1617 | CG5976-RB | 235..1126 | 908..17 | 4415 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475621..20476512 | 908..17 | 4370 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:06 has no hits.
BS16679.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:45 Download gff for
BS16679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PA | 168..1059 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:04 Download gff for
BS16679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 235..1126 | 17..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:45 Download gff for
BS16679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RB | 235..1126 | 17..908 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:45 Download gff for
BS16679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475621..20476512 | 17..908 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:04 Download gff for
BS16679.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468721..20469612 | 17..908 | 99 | | Minus |
BS16679.5prime Sequence
858 bp (770 high quality bases) assembled on 2007-05-15
> BS16679.5prime
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGAAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTC
BS16679.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5976-PA | 1059 | CG5976-RA | 1..842 | 17..858 | 4185 | 99.8 | Plus |
CG5976-PB | 1065 | CG5976-RB | 116..848 | 126..858 | 3640 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 426..1267 | 17..858 | 4195 | 99.9 | Plus |
isoQC-RB | 1617 | CG5976-RB | 177..909 | 126..858 | 3650 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475561..20476295 | 124..858 | 3660 | 99.9 | Plus |
3L | 28110227 | 3L | 20475387..20475497 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:44:43 has no hits.
BS16679.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:24 Download gff for
BS16679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-PA | 1..842 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:32 Download gff for
BS16679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1267 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:23 Download gff for
BS16679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1267 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:23 Download gff for
BS16679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475387..20475497 | 17..127 | 100 | -> | Plus |
3L | 20475565..20476295 | 128..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:32 Download gff for
BS16679.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468487..20468597 | 17..127 | 100 | -> | Plus |
arm_3L | 20468665..20469395 | 128..858 | 99 | | Plus |
BS16679.complete Sequence
1091 bp assembled on 2007-05-07
GenBank Submission: FJ638180
> BS16679.complete
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATACC
CTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTTC
CCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGCG
ACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATCT
GCTGGCCGGAACCGAGGCCAAGTAGAAGCTTTCTAGACCAT
BS16679.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1059 | CG5976-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
isoQC-RB | 1065 | CG5976-PB | 116..1065 | 126..1075 | 4750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-RA | 1975 | CG5976-RA | 426..1484 | 17..1075 | 5295 | 100 | Plus |
isoQC-RB | 1617 | CG5976-RB | 177..1126 | 126..1075 | 4750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20475561..20476512 | 124..1075 | 4760 | 100 | Plus |
3L | 28110227 | 3L | 20475387..20475497 | 17..127 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:49:52 has no hits.
BS16679.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:04 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 1..1059 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:08 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 418..1476 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:44 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1484 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:04 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5976-RA | 418..1476 | 17..1075 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:55 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
isoQC-RA | 426..1484 | 17..1075 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:55 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20475387..20475497 | 17..127 | 100 | -> | Plus |
3L | 20475565..20476512 | 128..1075 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:44 Download gff for
BS16679.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20468487..20468597 | 17..127 | 100 | -> | Plus |
arm_3L | 20468665..20469612 | 128..1075 | 100 | | Plus |
BS16679.pep Sequence
Translation from 16 to 1074
> BS16679.pep
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AK*
BS16679.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
isoQC-PA | 352 | CG5976-PA | 1..352 | 1..352 | 1835 | 100 | Plus |
isoQC-PB | 354 | CG5976-PB | 34..354 | 32..352 | 1651 | 98.8 | Plus |
CG6168-PC | 342 | CG6168-PC | 11..331 | 11..345 | 690 | 41.4 | Plus |
CG6168-PB | 342 | CG6168-PB | 11..331 | 11..345 | 690 | 41.4 | Plus |
QC-PA | 340 | CG32412-PA | 37..326 | 58..345 | 646 | 43.5 | Plus |