Clone BS16679 Report

Search the DGRC for BS16679

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptisoQC-RA
Protein status:BS16679.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16679.3prime Sequence

908 bp (831 high quality bases) assembled on 2007-05-15

> BS16679.3prime
ATGGTCTAGAAAGCTTCTACTTGGCCTCGGTTCCGGCCAGCAGATACTCC
AAAGCGAAGAGCCGTATAATCAGTGCCAGGTTGTCCGTCGTCGCATAATC
GATCACGCTGGCGTTATCGTCGGGCGTATGCCATACACTGGGAAAGGGCA
CCGGAATGAGGTGCAAGATCGGCACATTTCGCCGCAGGAAGGGTATGTGA
TCGTCCTCGATGAAAGAGGATCGCATGGCCTGCGACTGGAAGTAGCGGGT
GGGGTCGCGCTGGGCAACTCCACTGCTGGCATAGCGCTCCAGGAGCTGCA
ACTTGGCAAGACGTGTCTCCACGGACTGGATACGCATGTACCAGGACTCG
GTGTTTTCGAAGAAGCTGTAGAATGCCGGATCGGGGGCTCCCAACAGATC
CAGGAGCACCAGCATATCTATTCTATCAAGTTTTCCTTCATGGTGCCACT
TTTTGGCCAGGTGTCGTGCTCCATAGATGGAGTCCTTGGGTCCCCACTCC
TCAAAAGCCTCCTCGCCATCGAAGAACAAGAGCATCAAACTCAGTTTGCT
CTTCTTGAGGGGTTTCAACTGCTCCTGAAGCACCTGGGCCAGGTTGAGGA
GCATGGCACAGGGCACTGCCGAGTCGGTGGCCCCCAGGAATTCCACTCCA
GGCATGTATTTGCTATCATAATGGCAGGACAGCACCAGATATCTCTCAGC
ATTTGGATTCAGGGTGGCGATGATGTTGTGGAAATGCAATTTGCCTTTGA
TGGGAGCGTGATCATGAAAGCTGTTTACTTCCACATCCCAGTCTAGATCC
CTCAAACTCTGGACGATGTATTCGCGAACGATGCTAATGATTTGTGTGCC
CACAACTCGAGGTATAAGGATTTTGTCAATGGCTTCCCTTAGGTGTAGCT
TATCGGAT

BS16679.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976-PB 1065 CG5976-RB 246..1065 836..17 4100 100 Minus
CG5976-PA 1059 CG5976-RA 240..1059 836..17 4100 100 Minus
CG5976-PB 1065 CG5976-RB 174..237 908..845 320 100 Minus
CG5976-PA 1059 CG5976-RA 168..231 908..845 320 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 593..1484 908..17 4415 99.8 Minus
isoQC-RB 1617 CG5976-RB 235..1126 908..17 4415 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475621..20476512 908..17 4370 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 20:58:06 has no hits.

BS16679.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:45 Download gff for BS16679.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5976-PA 168..1059 17..908 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:04 Download gff for BS16679.3prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 235..1126 17..908 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:45 Download gff for BS16679.3prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RB 235..1126 17..908 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:45 Download gff for BS16679.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20475621..20476512 17..908 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:04 Download gff for BS16679.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468721..20469612 17..908 99   Minus

BS16679.5prime Sequence

858 bp (770 high quality bases) assembled on 2007-05-15

> BS16679.5prime
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGAAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTC

BS16679.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG5976-PA 1059 CG5976-RA 1..842 17..858 4185 99.8 Plus
CG5976-PB 1065 CG5976-RB 116..848 126..858 3640 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 426..1267 17..858 4195 99.9 Plus
isoQC-RB 1617 CG5976-RB 177..909 126..858 3650 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475561..20476295 124..858 3660 99.9 Plus
3L 28110227 3L 20475387..20475497 17..127 555 100 Plus
Blast to na_te.dros performed on 2015-02-11 03:44:43 has no hits.

BS16679.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:24 Download gff for BS16679.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5976-PA 1..842 17..858 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:32 Download gff for BS16679.5prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1267 17..858 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:23 Download gff for BS16679.5prime
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1267 17..858 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:23 Download gff for BS16679.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20475387..20475497 17..127 100 -> Plus
3L 20475565..20476295 128..858 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:32 Download gff for BS16679.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468487..20468597 17..127 100 -> Plus
arm_3L 20468665..20469395 128..858 99   Plus

BS16679.complete Sequence

1091 bp assembled on 2007-05-07

GenBank Submission: FJ638180

> BS16679.complete
GAAGTTATCAGTCGACATGCTACATCGAACAGCTAGAATGTGGACGCTGT
GCGTGCAGACAGCTTTGATAGCCACCTTGGTGAGGGGATCCACTTCCCAG
AAGGATAATCTCGTAGGAAGAACACAGATATCCTACAATCCCAGCGAGCT
CTCCGAGCCCCGATTCCTGGAGTACAGCAATCTATCCGATAAGCTACACC
TAAGGGAAGCCATTGACAAAATCCTTATACCTCGAGTTGTGGGCACAACA
AATCATAGCATCGTTCGCGAATACATCGTCCAGAGTTTGAGGGATCTAGA
CTGGGATGTGGAAGTAAACAGCTTTCATGATCACGCTCCCATCAAAGGCA
AATTGCATTTCCACAACATCATCGCCACCCTGAATCCAAATGCTGAGAGA
TATCTGGTGCTGTCCTGCCATTATGATAGCAAATACATGCCTGGAGTGGA
ATTCCTGGGGGCCACCGACTCGGCAGTGCCCTGTGCCATGCTCCTCAACC
TGGCCCAGGTGCTTCAGGAGCAGTTGAAACCCCTCAAGAAGAGCAAACTG
AGTTTGATGCTCTTGTTCTTCGATGGCGAGGAGGCTTTTGAGGAGTGGGG
ACCCAAGGACTCCATCTATGGAGCACGACACCTGGCCAAAAAGTGGCACC
ATGAAGGAAAACTTGATAGAATAGATATGCTGGTGCTCCTGGATCTGTTG
GGAGCCCCCGATCCGGCATTCTACAGCTTCTTCGAAAACACCGAGTCCTG
GTACATGCGTATCCAGTCCGTGGAGACACGTCTTGCCAAGTTGCAGCTCC
TGGAGCGCTATGCCAGCAGTGGAGTTGCCCAGCGCGACCCCACCCGCTAC
TTCCAGTCGCAGGCCATGCGATCCTCTTTCATCGAGGACGATCACATACC
CTTCCTGCGGCGAAATGTGCCGATCTTGCACCTCATTCCGGTGCCCTTTC
CCAGTGTATGGCATACGCCCGACGATAACGCCAGCGTGATCGATTATGCG
ACGACGGACAACCTGGCACTGATTATACGGCTCTTCGCTTTGGAGTATCT
GCTGGCCGGAACCGAGGCCAAGTAGAAGCTTTCTAGACCAT

BS16679.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1059 CG5976-PA 1..1059 17..1075 5295 100 Plus
isoQC-RB 1065 CG5976-PB 116..1065 126..1075 4750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-RA 1975 CG5976-RA 426..1484 17..1075 5295 100 Plus
isoQC-RB 1617 CG5976-RB 177..1126 126..1075 4750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20475561..20476512 124..1075 4760 100 Plus
3L 28110227 3L 20475387..20475497 17..127 555 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:49:52 has no hits.

BS16679.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:04 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 1..1059 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:08 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 418..1476 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:21:44 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1484 17..1075 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:04 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
CG5976-RA 418..1476 17..1075 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:55 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
isoQC-RA 426..1484 17..1075 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:55 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20475387..20475497 17..127 100 -> Plus
3L 20475565..20476512 128..1075 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:21:44 Download gff for BS16679.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20468487..20468597 17..127 100 -> Plus
arm_3L 20468665..20469612 128..1075 100   Plus

BS16679.pep Sequence

Translation from 16 to 1074

> BS16679.pep
MLHRTARMWTLCVQTALIATLVRGSTSQKDNLVGRTQISYNPSELSEPRF
LEYSNLSDKLHLREAIDKILIPRVVGTTNHSIVREYIVQSLRDLDWDVEV
NSFHDHAPIKGKLHFHNIIATLNPNAERYLVLSCHYDSKYMPGVEFLGAT
DSAVPCAMLLNLAQVLQEQLKPLKKSKLSLMLLFFDGEEAFEEWGPKDSI
YGARHLAKKWHHEGKLDRIDMLVLLDLLGAPDPAFYSFFENTESWYMRIQ
SVETRLAKLQLLERYASSGVAQRDPTRYFQSQAMRSSFIEDDHIPFLRRN
VPILHLIPVPFPSVWHTPDDNASVIDYATTDNLALIIRLFALEYLLAGTE
AK*

BS16679.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
isoQC-PA 352 CG5976-PA 1..352 1..352 1835 100 Plus
isoQC-PB 354 CG5976-PB 34..354 32..352 1651 98.8 Plus
CG6168-PC 342 CG6168-PC 11..331 11..345 690 41.4 Plus
CG6168-PB 342 CG6168-PB 11..331 11..345 690 41.4 Plus
QC-PA 340 CG32412-PA 37..326 58..345 646 43.5 Plus