Clone Sequence Records
BS16680.complete Sequence
2108 bp assembled on 2009-12-07
GenBank Submission: KX801347
> BS16680.complete
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTAGGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TGAATAACAACAATATCAGCACTCTGCACGAGGGTCTATTCGCTGATATG
GCCAGGCTAACCTTCCTGAATCTGGCCCACAACCAGATCAATGTGCTGAC
CAGCGAGATTTTCCGAGGACTGGGCAATCTAAATGTGCTGAAGCTGACCC
GGAATAATTTGAACTTTATCGGCGATACTGTCTTTGCGGAATTGTGGAGC
CTGAGTGAGCTGGAACTAGACGATAATCGCATTGAGCGCATTTCCGAGCG
CGCTCTGGATGGCCTGAATACACTGAAAACACTGAATCTGCGAAACAATC
TGCTGAAGAAGATCGACAATGGCCTGCTGCGGGGAACCCCCGCCCTGCTG
TCCATCAACGTGCAGGCAAACAAATTGGAAACGCTGACGTTCTACACATT
CCAGCCAATTATGGACAATTTGGTCAACAGCACCAGCGAGCTGCTCGTGT
CAGACAACAAATTCATTTGCGACTGTCGTCTGCAGTGGATCTTCGAATTG
AAAAATCGCACACGTCACCTGCAGCTGCGTGACTCGCTGGAGGACCTGCA
CTGCACGCTGCAGGAGCCGAAACTGTCGCACTTTGTGGACCCGGTGCCGC
CGACCATCCTGGACGTGCTCAATATCGGGGGATTCACGGCGATTGGCAGC
AATAGCGCCAGCATGGGCGGTGTGGGCAACAGCGTGGTGGGCAGCAGCTA
CAGCGGCCTGACTATGGACGACAGCAGGAAGCATTTGGGCAGCAGATCCC
GACAGGCACTGCGGGGACAGCGGCAGTTCGCCTCGAGTGCGGAGAACGTG
GTGGAGTCCAAGATGCGCAGGAGGAGGAAGCGACAGGAGGAGGTCAAGGA
GAAGGACCTGGCGGCAGTGGCTCCGGCTCACAAGCGATATGACTACTACG
ATGACAACAACGGAGGCATGTCCTTGGGTCATGGCCTAGACCTGGATGAC
AATCTTAGCTTGCACAAGCAGGGATTCTATGGTGCCGGTTCTCCCGTAGT
GGGTCACAACGATGTGGATGTCCTGATGACATCGCACTCCGCGTCGGGAG
ACGCCCTCGACATACTGACCACCAAGAACGCAATCTACATCAAGTTGTTC
CTGCTGAAGCCAGAAATGCTGCCCTGCCACGATGAACTCAGCGATCCCAC
CGAGCTGCCCCTCTCCCGCGATCTGATGGATGTGCGCAGCAATGTGGGCC
AGGACATGTCGACGGCAGGGGCAAATTCTTTGGCCCAGGGCATGACGATC
ATAGTGAGTCTAGTCGCACTGATGATGATCAGCCGGGGTTGAAAGCTTTC
TAGACCAT
BS16680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:57:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Con-RB | 2076 | CG7503-PB | 1..2076 | 17..2092 | 10380 | 100 | Plus |
| Con-RA | 2076 | CG7503-PA | 1..2076 | 17..2092 | 10380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:57:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Con-RB | 5588 | CG7503-RB | 998..3079 | 12..2093 | 10395 | 100 | Plus |
| Con-RA | 3758 | CG7503-RA | 467..2548 | 12..2093 | 10395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:57:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4955826..4956850 | 1036..12 | 5110 | 99.9 | Minus |
| 3L | 28110227 | 3L | 4939267..4940109 | 2093..1251 | 4215 | 100 | Minus |
| 3L | 28110227 | 3L | 4952891..4953109 | 1253..1035 | 1095 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:57:49 has no hits.
BS16680.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:40 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 473..2542 | 22..2091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:02:19 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 477..2546 | 22..2091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:58 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 473..2542 | 22..2091 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:44 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 477..2546 | 22..2091 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:44 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4939269..4940106 | 1254..2091 | 100 | <- | Minus |
| 3L | 4952891..4953107 | 1037..1253 | 100 | <- | Minus |
| 3L | 4955826..4956840 | 22..1036 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:02:19 Download gff for
BS16680.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4939269..4940106 | 1254..2091 | 100 | <- | Minus |
| arm_3L | 4952891..4953107 | 1037..1253 | 100 | <- | Minus |
| arm_3L | 4955826..4956840 | 22..1036 | 100 | | Minus |
BS16680.3prime Sequence
870 bp (759 high quality bases) assembled on 2007-05-15
> BS16680.3prime
ATGGTCTAGAAAGCTTTCAACCCCGGCTGATCATCATCAGTGCGACTAGA
CTCACTATGATCGTCATGCCCTGGGCCAAAGAATTTGCCCCTGCCGTCGA
CATGTCCTGGCCCACATTGCTGCGCACATCCATCAGATCGCGGGAGAGGG
GCAGCTCGGTGGGATCGCTGAGTTCATCGTGGCAGGGCAGCATTTCTGGC
TTCAGCAGGAACAACTTGATGTAGATTGCGTTCTTGGTGGTCAGTATGTC
GAGGGCGTCTCCCGACGCGGAGTGCGATGTCATCAGGACATCCACATCGT
TGTGACCCACTACGGGAGAACCGGCACCATAGAATCCCTGCTTGTGCAAG
CTAAGATTGTCATCCAGGTCTAGGCCATGACCCAAGGACATGCCTCCGTT
GTTGTCATCGTAGTAGTCATATCGCTTGTGAGCCGGAGCCACTGCCGCCA
GGTCCTTCTCCTTGACCTCCTCCTGTCGCTTCCTCCTCCTGCGCATCTTG
GACTCCACCACGTTCTCCGCACTCGAGGCGAACTGCCGCTGTCCCCGCAG
TGCCTGTCGGGATCTGCTGCCCAAATGCTTCCTGCTGTCGTCCATAGTCA
GGCCGCTGTAGCTGCTGCCCACCACGCTGTTGCCCACACCGCCCATGCTG
GCGCTATTGCTGCCAATCGCCGTGAATCCCCCGATATTGAGCACGTCCAG
GATGGTCGGCGGCACCGGGTCCACAAAGTGCGACAGTTTCGGCTCCTGCA
GCGTGCAGTGCAGGTCCTCCAGCGAGTCACGCAGCTGCAGGTGACGTGTG
CGATTTTTCAATTCGAAGATCCACTGCAGACGACAGTCGCAAATGAATTT
GTTGTCTGACACGAGCCGCT
BS16680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7503-PA | 2076 | Con-RA | 1227..2076 | 866..17 | 4250 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Con-RB | 5588 | CG7503-RB | 2225..3079 | 870..16 | 4260 | 99.9 | Minus |
| Con-RA | 3758 | CG7503-RA | 1694..2548 | 870..16 | 4260 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:47:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4939267..4940109 | 16..858 | 4215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:47:56 has no hits.
BS16680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:04:54 Download gff for
BS16680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7503-PA | 1223..2076 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:04 Download gff for
BS16680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 1694..2548 | 16..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:06 Download gff for
BS16680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 1694..2548 | 16..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:06 Download gff for
BS16680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4939267..4940113 | 16..864 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:04 Download gff for
BS16680.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4939267..4940113 | 16..864 | 99 | | Plus |
BS16680.5prime Sequence
856 bp (770 high quality bases) assembled on 2007-05-15
> BS16680.5prime
GAAGTTATCAGTCGACATGTTGCCGCATCATCAGCGCCATAAAATGGCGA
CTTTGGCGGACAGCGCCATTTGTTTCCTGCTCCTTTCGCTCCTGCTAATT
GGCGCCTGCCTGGTCACGCCCACCGAAGGACGCGCCAAAGATGACCGGCG
CACCAGGGGGCGTGGCAGCAGCAGTGGCGTCCTCTCGTCCTCCTCCAGCA
GCAGCAACAACATGAACAATGGCTACTATAGTGGCTCCTCGTCGACAGCG
GGCTCCTCCTCCGGCTATGTGTTCACCAGCAGTAGTGCGGTGAACTCGGG
AAGCACTGGCTATAGCGGACCGATGGACAGCACTGGATTTTGCACCCGGC
GGCGTGACATGAAGCTAATGTGCTACTGTACCCCGGATGAGAACCACGTG
CCAGTGCAGAAGGCCGAGTGCTGGGTGTTCTCCGAGGGATTGCATCAGAA
TGACACCACCTGGACGCGATTCTATCAGCAGAAGCGTTTGCGGGAACTGA
AGTTTGTGATCCAAAACAATGCCCGATTGGACTATATACCCACCATGATA
ATTGAACCGCTGAAGAACCTGAGCAGCATTGTGATTGAATACTCGCAGGT
GGAGATTGTCAAGAGCTATGCGTTCGCAAATCTGCCCTTTTTGGAAAGGA
TTATCTTGAACAACAATCACATAATGGCCCTCGACCAGGATGCCTTCGCC
AATCACATTAGGCTGAGGGAGTTGAACCTGGAGCACAACCAGATCTTCGA
GATGGATCGCTATGCATTCCGTAATTTGCCACTTTGCGAACGGCTCTTCC
TGAATATCAACAATATCAGCACTCTGCACGAAGGTCTATTCACTGATATG
GCCAGG
BS16680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7503-PA | 2076 | Con-RA | 1..840 | 17..856 | 4125 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Con-RB | 5588 | CG7503-RB | 998..1842 | 12..856 | 4165 | 99.5 | Plus |
| Con-RA | 3758 | CG7503-RA | 467..1311 | 12..856 | 4165 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4956006..4956850 | 856..12 | 4165 | 99.5 | Minus |
Blast to na_te.dros performed 2015-02-13 06:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3241..3317 | 144..219 | 112 | 62.3 | Plus |
BS16680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:28 Download gff for
BS16680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7503-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:41 Download gff for
BS16680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 457..1311 | 3..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:35 Download gff for
BS16680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Con-RA | 457..1311 | 3..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:35 Download gff for
BS16680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4956006..4956860 | 3..856 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:41 Download gff for
BS16680.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4956006..4956860 | 3..856 | 99 | | Minus |
BS16680.pep Sequence
Translation from 16 to 2091
> BS16680.pep
MLPHHQRHKMATLADSAICFLLLSLLLIGACLVTPTEGRAKDDRRTRGRG
SSSGVLSSSSSSSNNMNNGYYSGSSSTAGSSSGYVFTSSSAVNSGSTGYS
GPMDSTGFCTRRRDMKLMCYCTPDENHVPVQKAECWVFSEGLHQNDTTWT
RFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKS
YAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYA
FRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFR
GLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGL
NTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMD
NLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQE
PKLSHFVDPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVGSSYSGLTM
DDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEKDLAA
VAPAHKRYDYYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDV
DVLMTSHSASGDALDILTTKNAIYIKLFLLKPEMLPCHDELSDPTELPLS
RDLMDVRSNVGQDMSTAGANSLAQGMTIIVSLVALMMISRG*
BS16680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Con-PB | 691 | CG7503-PB | 1..691 | 1..691 | 3556 | 100 | Plus |
| Con-PA | 691 | CG7503-PA | 1..691 | 1..691 | 3556 | 100 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 505..743 | 156..395 | 276 | 30.8 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 505..743 | 156..395 | 276 | 30.8 | Plus |
| CG14762-PA | 470 | CG14762-PA | 144..469 | 174..478 | 268 | 26.2 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 486..731 | 185..423 | 248 | 26.3 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 486..731 | 185..423 | 248 | 26.3 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 648..946 | 156..436 | 246 | 24.3 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 648..946 | 156..436 | 246 | 24.3 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 797..1050 | 161..415 | 237 | 27.3 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 797..1050 | 161..415 | 237 | 27.3 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 551..791 | 152..395 | 206 | 24.6 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 551..791 | 152..395 | 206 | 24.6 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 1003..1224 | 171..390 | 181 | 26.6 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 1003..1224 | 171..390 | 181 | 26.6 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 618..839 | 174..395 | 179 | 22.1 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 618..839 | 174..395 | 179 | 22.1 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 586..820 | 165..400 | 174 | 23.3 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 586..820 | 165..400 | 174 | 23.3 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 295..567 | 137..387 | 171 | 21.4 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 295..567 | 137..387 | 171 | 21.4 | Plus |
| CG42346-PD | 1817 | CG42346-PD | 1012..1328 | 153..427 | 160 | 20.1 | Plus |
| CG42346-PC | 1817 | CG42346-PC | 1012..1328 | 153..427 | 160 | 20.1 | Plus |
