Clone Sequence Records
BS16681.complete Sequence
2051 bp assembled on 2009-12-07
GenBank Submission: KX804600
> BS16681.complete
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCG
GAATGTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTG
ACTTCTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAG
AAGCTGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTT
GGCTTTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATT
TGCCCAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTG
AGCAAGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTT
CGTGGCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTG
TGGTGGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGAT
GTCTACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAA
CATGGTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCT
CGTCCGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAG
TCGATGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCC
CTCGCAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCG
GAGTCAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTC
CAGATCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACC
TGCTAGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGG
CCACGGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACC
CTTATCAGCACCACCAGCAGCCAGTACATCGAGCAGCCCATTGCCAATAG
CACAAATAATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGA
GCACCGATTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGAC
TCGGTGCTGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCAT
CGAGCAGTGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGG
TGATCCGGGACGTCATCCGCACCTACACCACGTAGAAGCTTTCTAGACCA
T
BS16681.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:47:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 2019 | CG11988-PE | 1..2019 | 17..2035 | 10095 | 100 | Plus |
neur-RC | 2019 | CG11988-PC | 1..2019 | 17..2035 | 10095 | 100 | Plus |
neur-RD | 2016 | CG11988-PD | 1..2016 | 17..2035 | 10015 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 293..2313 | 17..2037 | 10105 | 100 | Plus |
neur-RC | 3756 | CG11988-RC | 293..2313 | 17..2037 | 10105 | 100 | Plus |
neur-RD | 3753 | CG11988-RD | 293..2310 | 17..2037 | 10025 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9023847 | 1783..40 | 8720 | 100 | Minus |
3R | 32079331 | 3R | 9021791..9022046 | 2037..1782 | 1280 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 05:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2613 | 1735..1843 | 120 | 59.1 | Plus |
BS16681.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:08 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1..2019 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:59 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RE | 289..2307 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:36 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 293..2311 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:41 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 289..2307 | 17..2035 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:15 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 293..2311 | 17..2035 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:15 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021793..9022044 | 1784..2035 | 100 | <- | Minus |
3R | 9022104..9023845 | 42..1783 | 100 | <- | Minus |
3R | 9039155..9039179 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:36 Download gff for
BS16681.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847515..4847766 | 1784..2035 | 100 | <- | Minus |
arm_3R | 4847826..4849567 | 42..1783 | 100 | <- | Minus |
arm_3R | 4864877..4864901 | 17..41 | 100 | | Minus |
BS16681.3prime Sequence
888 bp (846 high quality bases) assembled on 2007-05-15
> BS16681.3prime
ATGGTCTAGAAAGCTTCTACGTGGTGTAGGTGCGGATGACGTCCCGGATC
ACCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTC
GATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCG
AGTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTG
CTCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGT
GCTATTGGCAATGGGCTGCTCGATGTACTGGCTGCTGGTGGTGCTGATAA
GGGTGCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTG
GCCGTTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGC
AGGTGGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCT
GGAGAATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACT
CCGCCAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGA
GGGATGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCG
ACTCGGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGAC
GAGCTGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCAT
GTTGGGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGA
CATCCAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACC
ACAGCTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCAC
GAAGAAAGGCATCTCATCGCCGCGCTGAGGAGCAGCTG
BS16681.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PC | 2019 | neur-RC | 1180..2019 | 856..17 | 4200 | 100 | Minus |
CG11988-PA | 2265 | neur-RA | 1426..2265 | 856..17 | 4200 | 100 | Minus |
CG11988-PD | 2016 | neur-RD | 1180..1768 | 856..268 | 2945 | 100 | Minus |
CG11988-PB | 2262 | neur-RB | 1426..2014 | 856..268 | 2945 | 100 | Minus |
CG11988-PD | 2016 | neur-RD | 1766..2016 | 267..17 | 1255 | 100 | Minus |
CG11988-PB | 2262 | neur-RB | 2012..2262 | 267..17 | 1255 | 100 | Minus |
CG11988-PC | 2019 | neur-RC | 1148..1175 | 888..861 | 140 | 100 | Minus |
CG11988-PA | 2265 | neur-RA | 1394..1421 | 888..861 | 140 | 100 | Minus |
CG11988-PD | 2016 | neur-RD | 1148..1175 | 888..861 | 140 | 100 | Minus |
CG11988-PB | 2262 | neur-RB | 1394..1421 | 888..861 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 1440..2313 | 888..15 | 4325 | 99.8 | Minus |
neur-RA | 3992 | CG11988-RA | 1676..2549 | 888..15 | 4325 | 99.8 | Minus |
neur-RC | 3756 | CG11988-RC | 1440..2313 | 888..15 | 4325 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9022104..9022723 | 269..888 | 3055 | 99.5 | Plus |
3R | 32079331 | 3R | 9021791..9022046 | 15..270 | 1280 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2499..2613 | 317..209 | 120 | 59.1 | Minus |
BS16681.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:02 Download gff for
BS16681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PA | 1394..2265 | 17..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:43 Download gff for
BS16681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1440..2313 | 15..888 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:52 Download gff for
BS16681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 1440..2313 | 15..888 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:52 Download gff for
BS16681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9021791..9022044 | 15..268 | 100 | <- | Plus |
3R | 9022104..9022723 | 269..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:43 Download gff for
BS16681.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4847513..4847766 | 15..268 | 100 | <- | Plus |
arm_3R | 4847826..4848445 | 269..888 | 99 | | Plus |
BS16681.5prime Sequence
855 bp (794 high quality bases) assembled on 2007-05-15
> BS16681.5prime
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCANGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGTCATTGCTCATGATTTGGCAATGGGACTGCTCCTCTGCGCTACA
ATGCC
BS16681.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11988-PC | 2019 | neur-RC | 1..809 | 17..825 | 4001 | 99.7 | Plus |
CG11988-PD | 2016 | neur-RD | 1..809 | 17..825 | 4001 | 99.7 | Plus |
CG11988-PA | 2265 | neur-RA | 271..1055 | 41..825 | 3881 | 99.7 | Plus |
CG11988-PB | 2262 | neur-RB | 271..1055 | 41..825 | 3881 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-RE | 3381 | CG11988-RE | 293..1132 | 17..855 | 4104 | 99.4 | Plus |
neur-RD | 3753 | CG11988-RD | 293..1132 | 17..855 | 4104 | 99.4 | Plus |
neur-RC | 3756 | CG11988-RC | 293..1132 | 17..855 | 4104 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9023031..9023847 | 855..40 | 3964 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:54:44 has no hits.
BS16681.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:38 Download gff for
BS16681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11988-PD | 1..840 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:19 Download gff for
BS16681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 286..1132 | 5..855 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for
BS16681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
neur-RC | 286..1132 | 5..855 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for
BS16681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9023031..9023845 | 42..855 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:19 Download gff for
BS16681.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4848753..4849567 | 42..855 | 99 | <- | Minus |
BS16681.pep Sequence
Translation from 16 to 2034
> BS16681.pep
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTT*
BS16681.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
neur-PE | 672 | CG11988-PE | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PC | 672 | CG11988-PC | 1..672 | 1..672 | 3528 | 100 | Plus |
neur-PD | 671 | CG11988-PD | 1..671 | 1..672 | 3511 | 99.9 | Plus |
neur-PA | 754 | CG11988-PA | 90..754 | 8..672 | 3491 | 99.8 | Plus |
neur-PB | 753 | CG11988-PB | 90..753 | 8..672 | 3474 | 99.7 | Plus |