Clone BS16681 Report

Search the DGRC for BS16681

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:81
Vector:pDNR-Dual
Associated Gene/Transcriptneur-RC
Protein status:BS16681.pep: full length peptide match
Sequenced Size:2051

Clone Sequence Records

BS16681.complete Sequence

2051 bp assembled on 2009-12-07

GenBank Submission: KX804600

> BS16681.complete
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCAGGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGCCATTGCTCATGATTTGGCCAATGGACTGCCTCCTCTGCGCTAC
AATGCCAACGGACGACTGATTCCAGTGCCCTTCCACAACACCAAGGGCCG
GAATGTGCGGCTCTCGCAGGATCGCTTTGTGGCTTCTCGTACGGAATCTG
ACTTCTGCCAGGGATATGTGTTCACTGCCCGTCCCATTCGCATTGGTGAG
AAGCTGATTGTGCAGGTCCTGAAAACGGAACAGATGTACGTGGGTGCCTT
GGCTTTGGGTCTGACCTCCTGCAATCCGGCCATGTTGCAGCCCAATGATT
TGCCCAATGATTCGGATTTCCTGCTCGATCGCCCCGAGTACTGGGTGGTG
AGCAAGGATATTGCAGCTGCTCCTCAGCGCGGCGATGAGATTGCCTTCTT
CGTGGCGCCCAACGGTGAAGTGAGCATCAGCAAGAACAACGGACCAGCTG
TGGTGGTGATGCATGTGGACCAGTCCCTCCAGCTGTGGGCCTTCCTGGAT
GTCTACGGCTCGACGCAGTCTCTGAGGATGTTCCGCCAGCAGTTACCCAA
CATGGTTGCGTATCCATCGCAGCCGCAGGTCAATGTGAATGCCAGCAGCT
CGTCCGCCTGCAACGCTGCCTCCACGTCCCGCATGCTGCCCATGACCGAG
TCGATGAGCAGTCTGAATGCCGGAGCCACTGCCAAGCTGTTGCATCATCC
CTCGCAGCTGAGCGTAGCCCAGAGTACGAGCACTTTGGCCTCAGCTGGCG
GAGTCAATGGCAGCCGCATGATCAGCATGCCCTCCAACGGAGATATTCTC
CAGATCCAGCCGAATGGTGGTGGCACCGTTCTGGTGGTCAACCTGCCACC
TGCTAGCAGCTCGCACGATATAAACGGCCAACTCGCGGCCAGGCCAACGG
CCACGGTAACCTCCAGCGGTGTTCTGGCCGGAGCCTGCTCCAGCGGCACC
CTTATCAGCACCACCAGCAGCCAGTACATCGAGCAGCCCATTGCCAATAG
CACAAATAATGCGGCCAACAAGTGGAAGGACAGCCTGAGCGACCAGCAGA
GCACCGATTCGAGTGCCGAATGCACCATCTGCTACGAGAATCCCATCGAC
TCGGTGCTGTACATGTGCGGACACATGTGCATGTGCTACGACTGCGCCAT
CGAGCAGTGGCGCGGAGTGGGTGGTGGCCAGTGCCCACTGTGCCGGGCGG
TGATCCGGGACGTCATCCGCACCTACACCACGTAGAAGCTTTCTAGACCA
T

BS16681.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 05:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 2019 CG11988-PE 1..2019 17..2035 10095 100 Plus
neur-RC 2019 CG11988-PC 1..2019 17..2035 10095 100 Plus
neur-RD 2016 CG11988-PD 1..2016 17..2035 10015 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:47:06
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 293..2313 17..2037 10105 100 Plus
neur-RC 3756 CG11988-RC 293..2313 17..2037 10105 100 Plus
neur-RD 3753 CG11988-RD 293..2310 17..2037 10025 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 05:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9023847 1783..40 8720 100 Minus
3R 32079331 3R 9021791..9022046 2037..1782 1280 100 Minus
Blast to na_te.dros performed 2014-11-28 05:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2613 1735..1843 120 59.1 Plus

BS16681.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:18:08 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1..2019 17..2035 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:35:59 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RE 289..2307 17..2035 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:11:36 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 293..2311 17..2035 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:35:41 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 289..2307 17..2035 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 06:18:15 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
neur-RC 293..2311 17..2035 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 06:18:15 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9021793..9022044 1784..2035 100 <- Minus
3R 9022104..9023845 42..1783 100 <- Minus
3R 9039155..9039179 17..41 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:11:36 Download gff for BS16681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847515..4847766 1784..2035 100 <- Minus
arm_3R 4847826..4849567 42..1783 100 <- Minus
arm_3R 4864877..4864901 17..41 100   Minus

BS16681.3prime Sequence

888 bp (846 high quality bases) assembled on 2007-05-15

> BS16681.3prime
ATGGTCTAGAAAGCTTCTACGTGGTGTAGGTGCGGATGACGTCCCGGATC
ACCGCCCGGCACAGTGGGCACTGGCCACCACCCACTCCGCGCCACTGCTC
GATGGCGCAGTCGTAGCACATGCACATGTGTCCGCACATGTACAGCACCG
AGTCGATGGGATTCTCGTAGCAGATGGTGCATTCGGCACTCGAATCGGTG
CTCTGCTGGTCGCTCAGGCTGTCCTTCCACTTGTTGGCCGCATTATTTGT
GCTATTGGCAATGGGCTGCTCGATGTACTGGCTGCTGGTGGTGCTGATAA
GGGTGCCGCTGGAGCAGGCTCCGGCCAGAACACCGCTGGAGGTTACCGTG
GCCGTTGGCCTGGCCGCGAGTTGGCCGTTTATATCGTGCGAGCTGCTAGC
AGGTGGCAGGTTGACCACCAGAACGGTGCCACCACCATTCGGCTGGATCT
GGAGAATATCTCCGTTGGAGGGCATGCTGATCATGCGGCTGCCATTGACT
CCGCCAGCTGAGGCCAAAGTGCTCGTACTCTGGGCTACGCTCAGCTGCGA
GGGATGATGCAACAGCTTGGCAGTGGCTCCGGCATTCAGACTGCTCATCG
ACTCGGTCATGGGCAGCATGCGGGACGTGGAGGCAGCGTTGCAGGCGGAC
GAGCTGCTGGCATTCACATTGACCTGCGGCTGCGATGGATACGCAACCAT
GTTGGGTAACTGCTGGCGGAACATCCTCAGAGACTGCGTCGAGCCGTAGA
CATCCAGGAAGGCCCACAGCTGGAGGGACTGGTCCACATGCATCACCACC
ACAGCTGGTCCGTTGTTCTTGCTGATGCTCACTTCACCGTTGGGCGCCAC
GAAGAAAGGCATCTCATCGCCGCGCTGAGGAGCAGCTG

BS16681.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PC 2019 neur-RC 1180..2019 856..17 4200 100 Minus
CG11988-PA 2265 neur-RA 1426..2265 856..17 4200 100 Minus
CG11988-PD 2016 neur-RD 1180..1768 856..268 2945 100 Minus
CG11988-PB 2262 neur-RB 1426..2014 856..268 2945 100 Minus
CG11988-PD 2016 neur-RD 1766..2016 267..17 1255 100 Minus
CG11988-PB 2262 neur-RB 2012..2262 267..17 1255 100 Minus
CG11988-PC 2019 neur-RC 1148..1175 888..861 140 100 Minus
CG11988-PA 2265 neur-RA 1394..1421 888..861 140 100 Minus
CG11988-PD 2016 neur-RD 1148..1175 888..861 140 100 Minus
CG11988-PB 2262 neur-RB 1394..1421 888..861 140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 1440..2313 888..15 4325 99.8 Minus
neur-RA 3992 CG11988-RA 1676..2549 888..15 4325 99.8 Minus
neur-RC 3756 CG11988-RC 1440..2313 888..15 4325 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9022104..9022723 269..888 3055 99.5 Plus
3R 32079331 3R 9021791..9022046 15..270 1280 100 Plus
Blast to na_te.dros performed 2015-02-12 05:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2499..2613 317..209 120 59.1 Minus

BS16681.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:02 Download gff for BS16681.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PA 1394..2265 17..888 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:42:43 Download gff for BS16681.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1440..2313 15..888 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:32:52 Download gff for BS16681.3prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 1440..2313 15..888 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:32:52 Download gff for BS16681.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9021791..9022044 15..268 100 <- Plus
3R 9022104..9022723 269..888 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:42:43 Download gff for BS16681.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4847513..4847766 15..268 100 <- Plus
arm_3R 4847826..4848445 269..888 99   Plus

BS16681.5prime Sequence

855 bp (794 high quality bases) assembled on 2007-05-15

> BS16681.5prime
GAAGTTATCAGTCGACATGGGTCAGTCGGCTGGTAAAATAGTTCGCCGCT
CACCCTCTTCATGTCCTGGCCCCAACAACCTGCCTCCGCTGCAATTCCAC
TCCGTACATGGCGACAACATCCGAATTTCAAGGGACGGAACCCTGGCCCG
TCGCTTTGAGAGCTTCTGCAGGGCCATCACCTTTTCAGCGCGTCCGGTTC
GCATCAACGAGAGGATCTGCGTGAAGTTTGCTGAGATCTCGAACAACTGG
AACGGTGGAATTCGCTTTGGATTCACCAGCAACGATCCTGTAACGCTGGA
GGGAACGCTGCCCAAGTACGCCTGTCCGGATCTGACCAACAGGCCTGGCT
TCTGGGCCAAGGCTCTGCACGAGCAGTACTGCGAGAAGGACAACATACTT
TACTACTATGTCAATGGAGCTGGCGATGTGATCTATGGTATAAACAACGA
GGAGAAGGGTGTGATACTGACCGGCATCGATACGAGAAGCCTGCTGTGGA
CGGTGATCGATATCTATGGCAACTGCACGGGCATTGAGTTTCTCGATTCT
CGCATTTACATGTACCAGCAGCAGCCAGCGGCTATACCAATGGCCACTGT
GCCCGCCCAGCAACAGCAAATGCCCCAGCCAGCTGCCAATGCCTCCTCCG
CCCTGAATTCCCATCACCCGCATCAGCAGTCGAGGAGATCCCTGCCAGGA
CACACTGCGGCCATCGAGCACGATCTGGAGCGCCATGTGATGCCGTCCCT
GCAATCCCTGCACTTGGCANGAAACGGTGGAAGCGTGGCTAGCGTAGAAC
AGGCGGTCATTGCTCATGATTTGGCAATGGGACTGCTCCTCTGCGCTACA
ATGCC

BS16681.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11988-PC 2019 neur-RC 1..809 17..825 4001 99.7 Plus
CG11988-PD 2016 neur-RD 1..809 17..825 4001 99.7 Plus
CG11988-PA 2265 neur-RA 271..1055 41..825 3881 99.7 Plus
CG11988-PB 2262 neur-RB 271..1055 41..825 3881 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
neur-RE 3381 CG11988-RE 293..1132 17..855 4104 99.4 Plus
neur-RD 3753 CG11988-RD 293..1132 17..855 4104 99.4 Plus
neur-RC 3756 CG11988-RC 293..1132 17..855 4104 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9023031..9023847 855..40 3964 99.3 Minus
Blast to na_te.dros performed on 2015-02-10 20:54:44 has no hits.

BS16681.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:38 Download gff for BS16681.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11988-PD 1..840 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:19 Download gff for BS16681.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 286..1132 5..855 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for BS16681.5prime
Subject Subject Range Query Range Percent Splice Strand
neur-RC 286..1132 5..855 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for BS16681.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9023031..9023845 42..855 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:19 Download gff for BS16681.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4848753..4849567 42..855 99 <- Minus

BS16681.pep Sequence

Translation from 16 to 2034

> BS16681.pep
MGQSAGKIVRRSPSSCPGPNNLPPLQFHSVHGDNIRISRDGTLARRFESF
CRAITFSARPVRINERICVKFAEISNNWNGGIRFGFTSNDPVTLEGTLPK
YACPDLTNRPGFWAKALHEQYCEKDNILYYYVNGAGDVIYGINNEEKGVI
LTGIDTRSLLWTVIDIYGNCTGIEFLDSRIYMYQQQPAAIPMATVPAQQQ
QMPQPAANASSALNSHHPHQQSRRSLPGHTAAIEHDLERHVMPSLQSLHL
AGNGGSVASVEQAAIAHDLANGLPPLRYNANGRLIPVPFHNTKGRNVRLS
QDRFVASRTESDFCQGYVFTARPIRIGEKLIVQVLKTEQMYVGALALGLT
SCNPAMLQPNDLPNDSDFLLDRPEYWVVSKDIAAAPQRGDEIAFFVAPNG
EVSISKNNGPAVVVMHVDQSLQLWAFLDVYGSTQSLRMFRQQLPNMVAYP
SQPQVNVNASSSSACNAASTSRMLPMTESMSSLNAGATAKLLHHPSQLSV
AQSTSTLASAGGVNGSRMISMPSNGDILQIQPNGGGTVLVVNLPPASSSH
DINGQLAARPTATVTSSGVLAGACSSGTLISTTSSQYIEQPIANSTNNAA
NKWKDSLSDQQSTDSSAECTICYENPIDSVLYMCGHMCMCYDCAIEQWRG
VGGGQCPLCRAVIRDVIRTYTT*

BS16681.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
neur-PE 672 CG11988-PE 1..672 1..672 3528 100 Plus
neur-PC 672 CG11988-PC 1..672 1..672 3528 100 Plus
neur-PD 671 CG11988-PD 1..671 1..672 3511 99.9 Plus
neur-PA 754 CG11988-PA 90..754 8..672 3491 99.8 Plus
neur-PB 753 CG11988-PB 90..753 8..672 3474 99.7 Plus