Clone Sequence Records
BS16682.3prime Sequence
441 bp (441 high quality bases) assembled on 2007-05-15
> BS16682.3prime
ATGGTCTAGAAAGCTTTTAGGCCCGCTCGCCACGGATGCGTCTGGCCAGC
TGGATGTCCTTGGGCATAATGGTGACGCGCTTGGCGTGAATGGCGCACAG
ATTGGTGTCCTCGAACAGACCGACCAGGTACGCCTCGCTGGCCTCCTGTA
GGGCTCCAATGGCCGCCGACTGGAAGCGCAGATCGGTCTTGAAGTCCTGG
GCTATCTCGCGCACCAGACGCTGGAACGGCAGCTTGCGGATGAGCAGCTC
CGTGGACTTCTGGTAGCGACGAATCTCACGCAGGGCCACCGTTCCAGGAC
GGTAGCGATGTGGCTTCTTCACTCCGCCGGTGGATGGCGCCGATTTACGG
GCCGCCTTGGTGGCCAGCTGCTTGCGGGGCGCCTTGCCTCCGGTCGATTT
ACGGGCTGTTTGCTTGGTACGTGCCATGTCGACTGATAACT
BS16682.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5825-PA | 411 | His3.3A-RA | 1..411 | 427..17 | 2055 | 100 | Minus |
CG5825-PB | 372 | His3.3A-RB | 1..329 | 427..99 | 1645 | 100 | Minus |
CG8989-PA | 411 | His3.3B-RA | 1..215 | 427..213 | 475 | 88.8 | Minus |
CG8989-PC | 411 | His3.3B-RC | 1..215 | 427..213 | 475 | 88.8 | Minus |
CG8989-PB | 411 | His3.3B-RB | 1..215 | 427..213 | 475 | 88.8 | Minus |
CG8989-PA | 411 | His3.3B-RA | 292..378 | 136..50 | 185 | 88.5 | Minus |
CG8989-PC | 411 | His3.3B-RC | 292..378 | 136..50 | 185 | 88.5 | Minus |
CG8989-PB | 411 | His3.3B-RB | 292..378 | 136..50 | 185 | 88.5 | Minus |
CG5825-PB | 372 | His3.3A-RB | 330..363 | 49..16 | 170 | 100 | Minus |
CG31613-PA | 411 | His3:CG31613-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33803-PA | 411 | His3:CG33803-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33806-PA | 411 | His3:CG33806-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33809-PA | 411 | His3:CG33809-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33830-PA | 411 | His3:CG33830-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33848-PA | 411 | His3:CG33848-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33863-PA | 411 | His3:CG33863-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33821-PA | 411 | His3:CG33821-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33824-PA | 411 | His3:CG33824-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33812-PA | 411 | His3:CG33812-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33815-PA | 411 | His3:CG33815-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33818-PA | 411 | His3:CG33818-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33827-PA | 411 | His3:CG33827-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33833-PA | 411 | His3:CG33833-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33836-PA | 411 | His3:CG33836-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33839-PA | 411 | His3:CG33839-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33842-PA | 411 | His3:CG33842-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33845-PA | 411 | His3:CG33845-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33851-PA | 411 | His3:CG33851-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33854-PA | 411 | His3:CG33854-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33857-PA | 411 | His3:CG33857-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33860-PA | 411 | His3:CG33860-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG33866-PA | 411 | His3:CG33866-RA | 95..167 | 333..261 | 140 | 87.6 | Minus |
CG31613-PA | 411 | His3:CG31613-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33803-PA | 411 | His3:CG33803-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33806-PA | 411 | His3:CG33806-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33809-PA | 411 | His3:CG33809-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33830-PA | 411 | His3:CG33830-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33848-PA | 411 | His3:CG33848-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33863-PA | 411 | His3:CG33863-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33821-PA | 411 | His3:CG33821-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33824-PA | 411 | His3:CG33824-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33812-PA | 411 | His3:CG33812-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33815-PA | 411 | His3:CG33815-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33818-PA | 411 | His3:CG33818-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33827-PA | 411 | His3:CG33827-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33833-PA | 411 | His3:CG33833-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33836-PA | 411 | His3:CG33836-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33839-PA | 411 | His3:CG33839-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33842-PA | 411 | His3:CG33842-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33845-PA | 411 | His3:CG33845-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33851-PA | 411 | His3:CG33851-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33854-PA | 411 | His3:CG33854-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33857-PA | 411 | His3:CG33857-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33860-PA | 411 | His3:CG33860-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
CG33866-PA | 411 | His3:CG33866-RA | 187..218 | 241..210 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His3.3A-RD | 772 | CG5825-RD | 126..537 | 427..16 | 2060 | 100 | Minus |
His3.3A-RC | 926 | CG5825-RC | 126..537 | 427..16 | 2060 | 100 | Minus |
His3.3A-RA | 848 | CG5825-RA | 202..613 | 427..16 | 2060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5055259..5055541 | 427..145 | 1415 | 100 | Minus |
X | 23542271 | X | 9154379..9154663 | 145..429 | 885 | 87.4 | Plus |
2L | 23513712 | 2L | 21420186..21420596 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21425250..21425660 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21430312..21430722 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21435356..21435766 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21440244..21440654 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21454445..21454855 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21484738..21485148 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21489887..21490297 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21494932..21495342 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21499977..21500387 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21505030..21505440 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21510075..21510485 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21515119..21515529 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21520166..21520576 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21525009..21525419 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21529852..21530262 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21534693..21535103 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21541210..21541620 | 427..17 | 855 | 80.5 | Minus |
2L | 23513712 | 2L | 21459504..21459914 | 427..17 | 840 | 80.3 | Minus |
2L | 23513712 | 2L | 21464564..21464974 | 427..17 | 840 | 80.3 | Minus |
2L | 23513712 | 2L | 21469607..21470017 | 427..17 | 840 | 80.3 | Minus |
2L | 23513712 | 2L | 21474650..21475060 | 427..17 | 840 | 80.3 | Minus |
2L | 23513712 | 2L | 21479693..21480103 | 427..17 | 840 | 80.3 | Minus |
2L | 23513712 | 2L | 5055628..5055760 | 148..16 | 665 | 100 | Minus |
2L | 23513712 | 2L | 21405669..21405970 | 318..17 | 655 | 81.1 | Minus |
X | 23542271 | X | 9154112..9154231 | 17..136 | 360 | 86.7 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:05:08 has no hits.
BS16682.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:16 Download gff for
BS16682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5825-PA | 1..411 | 17..427 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:58 Download gff for
BS16682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 13..427 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:13:50 Download gff for
BS16682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 13..427 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:13:50 Download gff for
BS16682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5055259..5055540 | 146..427 | 100 | -> | Minus |
2L | 5055631..5055763 | 13..145 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:58 Download gff for
BS16682.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5055259..5055540 | 146..427 | 100 | -> | Minus |
arm_2L | 5055631..5055763 | 13..145 | 99 | | Minus |
BS16682.5prime Sequence
441 bp (441 high quality bases) assembled on 2007-05-15
> BS16682.5prime
GAAGTTATCAGTCGACATGGCACGTACCAAGCAAACAGCCCGTAAATCGA
CCGGAGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCACATCGCTACCGTCCTGG
AACGGTGGCCCTGCGTGAGATTCGTCGCTACCAGAAGTCCACGGAGCTGC
TCATCCGCAAGCTGCCGTTCCAGCGTCTGGTGCGCGAGATAGCCCAGGAC
TTCAAGACCGATCTGCGCTTCCAGTCGGCGGCCATTGGAGCCCTACAGGA
GGCCAGCGAGGCGTACCTGGTCGGTCTGTTCGAGGACACCAATCTGTGCG
CCATTCACGCCAAGCGCGTCACCATTATGCCCAAGGACATCCAGCTGGCC
AGACGCATCCGTGGCGAGCGGGCCTAAAAGCTTTCTAGACC
BS16682.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5825-PA | 411 | His3.3A-RA | 1..411 | 17..427 | 2055 | 100 | Plus |
CG5825-PB | 372 | His3.3A-RB | 1..329 | 17..345 | 1645 | 100 | Plus |
CG8989-PA | 411 | His3.3B-RA | 1..215 | 17..231 | 475 | 88.8 | Plus |
CG8989-PC | 411 | His3.3B-RC | 1..215 | 17..231 | 475 | 88.8 | Plus |
CG8989-PB | 411 | His3.3B-RB | 1..215 | 17..231 | 475 | 88.8 | Plus |
CG8989-PA | 411 | His3.3B-RA | 292..378 | 308..394 | 185 | 88.5 | Plus |
CG8989-PC | 411 | His3.3B-RC | 292..378 | 308..394 | 185 | 88.5 | Plus |
CG8989-PB | 411 | His3.3B-RB | 292..378 | 308..394 | 185 | 88.5 | Plus |
CG5825-PB | 372 | His3.3A-RB | 330..363 | 395..428 | 170 | 100 | Plus |
CG31613-PA | 411 | His3:CG31613-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33803-PA | 411 | His3:CG33803-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33806-PA | 411 | His3:CG33806-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33809-PA | 411 | His3:CG33809-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33830-PA | 411 | His3:CG33830-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33848-PA | 411 | His3:CG33848-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33863-PA | 411 | His3:CG33863-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33821-PA | 411 | His3:CG33821-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33824-PA | 411 | His3:CG33824-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33812-PA | 411 | His3:CG33812-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33815-PA | 411 | His3:CG33815-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33818-PA | 411 | His3:CG33818-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33827-PA | 411 | His3:CG33827-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33833-PA | 411 | His3:CG33833-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33836-PA | 411 | His3:CG33836-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33839-PA | 411 | His3:CG33839-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33842-PA | 411 | His3:CG33842-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33845-PA | 411 | His3:CG33845-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33851-PA | 411 | His3:CG33851-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33854-PA | 411 | His3:CG33854-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33857-PA | 411 | His3:CG33857-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33860-PA | 411 | His3:CG33860-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG33866-PA | 411 | His3:CG33866-RA | 95..167 | 111..183 | 140 | 87.6 | Plus |
CG31613-PA | 411 | His3:CG31613-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33803-PA | 411 | His3:CG33803-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33806-PA | 411 | His3:CG33806-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33809-PA | 411 | His3:CG33809-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33830-PA | 411 | His3:CG33830-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33848-PA | 411 | His3:CG33848-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33863-PA | 411 | His3:CG33863-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33821-PA | 411 | His3:CG33821-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33824-PA | 411 | His3:CG33824-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33812-PA | 411 | His3:CG33812-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33815-PA | 411 | His3:CG33815-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33818-PA | 411 | His3:CG33818-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33827-PA | 411 | His3:CG33827-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33833-PA | 411 | His3:CG33833-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33836-PA | 411 | His3:CG33836-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33839-PA | 411 | His3:CG33839-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33842-PA | 411 | His3:CG33842-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33845-PA | 411 | His3:CG33845-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33851-PA | 411 | His3:CG33851-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33854-PA | 411 | His3:CG33854-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33857-PA | 411 | His3:CG33857-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33860-PA | 411 | His3:CG33860-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
CG33866-PA | 411 | His3:CG33866-RA | 187..218 | 203..234 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His3.3A-RD | 772 | CG5825-RD | 126..537 | 17..428 | 2060 | 100 | Plus |
His3.3A-RC | 926 | CG5825-RC | 126..537 | 17..428 | 2060 | 100 | Plus |
His3.3A-RA | 848 | CG5825-RA | 202..613 | 17..428 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5055259..5055541 | 17..299 | 1415 | 100 | Plus |
X | 23542271 | X | 9154379..9154663 | 299..15 | 885 | 87.4 | Minus |
2L | 23513712 | 2L | 21420186..21420596 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21425250..21425660 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21430312..21430722 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21435356..21435766 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21440244..21440654 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21454445..21454855 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21484738..21485148 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21489887..21490297 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21494932..21495342 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21499977..21500387 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21505030..21505440 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21510075..21510485 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21515119..21515529 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21520166..21520576 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21525009..21525419 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21529852..21530262 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21534693..21535103 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21541210..21541620 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21459504..21459914 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21464564..21464974 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21469607..21470017 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21474650..21475060 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21479693..21480103 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 5055628..5055760 | 296..428 | 665 | 100 | Plus |
2L | 23513712 | 2L | 21405669..21405970 | 126..427 | 655 | 81.1 | Plus |
X | 23542271 | X | 9154112..9154231 | 427..308 | 360 | 86.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:21:57 has no hits.
BS16682.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:17 Download gff for
BS16682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5825-PA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:26 Download gff for
BS16682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:49:18 Download gff for
BS16682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 17..431 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:49:18 Download gff for
BS16682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5055259..5055540 | 17..298 | 100 | -> | Plus |
2L | 5055631..5055763 | 299..431 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:26 Download gff for
BS16682.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5055259..5055540 | 17..298 | 100 | -> | Plus |
arm_2L | 5055631..5055763 | 299..431 | 99 | | Plus |
BS16682.complete Sequence
443 bp assembled on 2007-05-07
GenBank Submission: FJ638181
> BS16682.complete
GAAGTTATCAGTCGACATGGCACGTACCAAGCAAACAGCCCGTAAATCGA
CCGGAGGCAAGGCGCCCCGCAAGCAGCTGGCCACCAAGGCGGCCCGTAAA
TCGGCGCCATCCACCGGCGGAGTGAAGAAGCCACATCGCTACCGTCCTGG
AACGGTGGCCCTGCGTGAGATTCGTCGCTACCAGAAGTCCACGGAGCTGC
TCATCCGCAAGCTGCCGTTCCAGCGTCTGGTGCGCGAGATAGCCCAGGAC
TTCAAGACCGATCTGCGCTTCCAGTCGGCGGCCATTGGAGCCCTACAGGA
GGCCAGCGAGGCGTACCTGGTCGGTCTGTTCGAGGACACCAATCTGTGCG
CCATTCACGCCAAGCGCGTCACCATTATGCCCAAGGACATCCAGCTGGCC
AGACGCATCCGTGGCGAGCGGGCCTAAAAGCTTTCTAGACCAT
BS16682.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His3.3A-RD | 411 | CG5825-PD | 1..411 | 17..427 | 2055 | 100 | Plus |
His3.3A-RC | 411 | CG5825-PC | 1..411 | 17..427 | 2055 | 100 | Plus |
His3.3A-RA | 411 | CG5825-PA | 1..411 | 17..427 | 2055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His3.3A-RD | 772 | CG5825-RD | 126..537 | 17..428 | 2060 | 100 | Plus |
His3.3A-RC | 926 | CG5825-RC | 126..537 | 17..428 | 2060 | 100 | Plus |
His3.3A-RA | 848 | CG5825-RA | 202..613 | 17..428 | 2060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5055259..5055541 | 17..299 | 1415 | 100 | Plus |
X | 23542271 | X | 9154379..9154663 | 299..15 | 885 | 87.4 | Minus |
2L | 23513712 | 2L | 21420186..21420596 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21425250..21425660 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21430312..21430722 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21435356..21435766 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21440244..21440654 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21454445..21454855 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21484738..21485148 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21489887..21490297 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21494932..21495342 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21499977..21500387 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21505030..21505440 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21510075..21510485 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21515119..21515529 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21520166..21520576 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21525009..21525419 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21529852..21530262 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21534693..21535103 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21541210..21541620 | 17..427 | 855 | 80.5 | Plus |
2L | 23513712 | 2L | 21459504..21459914 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21464564..21464974 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21469607..21470017 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21474650..21475060 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 21479693..21480103 | 17..427 | 840 | 80.3 | Plus |
2L | 23513712 | 2L | 5055628..5055760 | 296..428 | 665 | 100 | Plus |
2L | 23513712 | 2L | 21405669..21405970 | 126..427 | 655 | 81.1 | Plus |
X | 23542271 | X | 9154112..9154231 | 427..308 | 360 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:59:07 has no hits.
BS16682.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:05 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 1..411 | 17..427 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:10 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:54 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..610 | 17..425 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:05 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..616 | 17..431 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:25 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
His3.3A-RA | 202..610 | 17..425 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:25 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5055259..5055540 | 17..298 | 100 | -> | Plus |
2L | 5055631..5055757 | 299..425 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:54 Download gff for
BS16682.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5055259..5055540 | 17..298 | 100 | -> | Plus |
arm_2L | 5055631..5055757 | 299..425 | 100 | | Plus |
BS16682.pep Sequence
Translation from 16 to 426
> BS16682.pep
MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALR
EIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAY
LVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*
BS16682.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
His3.3A-PD | 136 | CG5825-PD | 1..136 | 1..136 | 676 | 100 | Plus |
His3.3A-PC | 136 | CG5825-PC | 1..136 | 1..136 | 676 | 100 | Plus |
His3.3A-PA | 136 | CG5825-PA | 1..136 | 1..136 | 676 | 100 | Plus |
His3.3B-PE | 136 | CG8989-PE | 1..136 | 1..136 | 676 | 100 | Plus |
His3.3B-PB | 136 | CG8989-PB | 1..136 | 1..136 | 676 | 100 | Plus |