Clone BS16686 Report

Search the DGRC for BS16686

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:86
Vector:pDNR-Dual
Associated Gene/TranscriptCG7231-RC
Protein status:BS16686.pep: full length peptide match
Sequenced Size:935

Clone Sequence Records

BS16686.complete Sequence

935 bp assembled on 2010-02-09

GenBank Submission: KX800717

> BS16686.complete
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTGGATAAGTTGCGCAAACTGAT
CTTCAGCTTCGGCTTGGATAGAGTCTATCTGGATGTGCCGGAGGAGCTGG
CCTCACAATTGAACCTGGACAATCCCGGCAACGGAGCCAGCACCTTCAAA
TCCCTGTTTGGCTTCAGTTTCATGAGCCTTTGTTTTTGGGCTCTGTCCAG
CTGGATGCAGCGGTTATAAAAGCTTTCTAGACCAT

BS16686.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 903 CG7231-PF 1..903 17..919 4515 100 Plus
CG7231-RD 903 CG7231-PD 1..903 17..919 4515 100 Plus
CG7231-RC 903 CG7231-PC 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 1264 CG7231-RF 282..1184 17..919 4515 100 Plus
CG7231-RD 1324 CG7231-RD 342..1244 17..919 4515 100 Plus
CG7231-RC 1256 CG7231-RC 274..1176 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7986139..7986705 353..919 2835 100 Plus
2L 23513712 2L 7985834..7986075 111..352 1210 100 Plus
2L 23513712 2L 7985675..7985770 17..112 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:54:10 has no hits.

BS16686.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:45 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RD 442..1342 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:25 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 274..1174 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:20 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 887..1787 17..917 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:03 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 274..1174 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:03 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7985675..7985768 17..110 100 -> Plus
2L 7985834..7986075 111..352 100 -> Plus
2L 7986139..7986703 353..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:25 Download gff for BS16686.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7985675..7985768 17..110 100 -> Plus
arm_2L 7985834..7986075 111..352 100 -> Plus
arm_2L 7986139..7986703 353..917 100   Plus

BS16686.3prime Sequence

871 bp (831 high quality bases) assembled on 2007-05-15

> BS16686.3prime
ATGGTCTAGAAAGCTTTTATAACCGCTGCATCCAGCTGGACAGAGCCCAA
AAACAAAGGCTCATGAAACTGAAGCCAAACAGGGATTTGAAGGTGCTGGC
TCCGTTGCCGGGATTGTCCAGGTTCAATTGTGAGGCCAGCTCCTCCGGCA
CATCCAGATAGACTCTATCCAAGCCGAAGCTGAAGATCAGTTTGCGCAAC
TTATCCACATCCACATAGTCACCGGCAGACGACCAGATGGTCAGGGTGCT
CTCGTTTGTCTCGTTCACCGCGGCCACCAGTCGATGCAGTTGCTCCTCGC
TGTTGGCGGCAATGCCAGCGCGCACGGGAAAGGTTATGGCCTGGCCAGTG
GATAGGACATTGTTCTCGCTCAGCGTTTCCAGCATGTCATCACACTGCTG
CTGCGTGTACTCGCCATCCCGGAAGTCGGCTCCCCAGTTAGTTGTCCAGC
CAATGGAGAGCACTGCCTGTTTGTAGCGCATACAGCCGGCGAAGAATCGG
TCCGCATCAACGGGTACGGTTCTATTCTGTTCCACGGGACCACTTAGAAT
ATCGGCGTTTATCCACACAGGATACGTGGTAGGGTTCGGAATATTCACGT
CCAGAATGTCCAGGGAACCCTCGAATACCTCGATCGACTTGAAGTCGAGC
TTAACGCCCTTTTTTTGGTCCTCATGATCACGGTTGAAATTAATGATCTG
GTTGAGAAATTCCGACAGCGTAAGATCAGAGACATTGGCCGGCGGATGGG
CCATTATGGGCATGTCCTCGCCATCGCCATTCAGTTTGCCCAGCACAATG
TCCGCTTCGATGAAGTCAATGCCACTGGTTTCGGTTAGGACCTCGTCCAG
CAATTGCTGGCTGTTGACGGC

BS16686.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-PC 903 CG7231-RC 49..903 871..17 4275 100 Minus
CG7231-PA 912 CG7231-RA 346..912 583..17 2835 100 Minus
CG7231-PB 1077 CG7231-RB 511..1077 583..17 2835 100 Minus
CG7231-PA 912 CG7231-RA 49..336 871..584 1440 100 Minus
CG7231-PB 1077 CG7231-RB 214..501 871..584 1440 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-RF 1264 CG7231-RF 330..1184 871..17 4275 100 Minus
CG7231-RD 1324 CG7231-RD 390..1244 871..17 4275 100 Minus
CG7231-RC 1256 CG7231-RC 322..1176 871..17 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7986139..7986705 583..17 2835 100 Minus
2L 23513712 2L 7985834..7986075 825..584 1210 100 Minus
2L 23513712 2L 7985723..7985770 871..824 240 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:49:17 has no hits.

BS16686.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:17 Download gff for BS16686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-PC 49..903 17..871 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:10 Download gff for BS16686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 322..1176 17..871 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:56 Download gff for BS16686.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7231-RC 322..1176 17..871 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:56 Download gff for BS16686.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7985723..7985768 826..871 100 -> Minus
2L 7985834..7986075 584..825 100 -> Minus
2L 7986139..7986705 17..583 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:10 Download gff for BS16686.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7985723..7985768 826..871 100 -> Minus
arm_2L 7985834..7986075 584..825 100 -> Minus
arm_2L 7986139..7986705 17..583 100   Minus

BS16686.pep Sequence

Translation from 16 to 918

> BS16686.pep
MMKVWGTNLTAITWAHAVNSQQLLDEVLTETSGIDFIEADIVLGKLNGDG
EDMPIMAHPPANVSDLTLSEFLNQIINFNRDHEDQKKGVKLDFKSIEVFE
GSLDILDVNIPNPTTYPVWINADILSGPVEQNRTVPVDADRFFAGCMRYK
QAVLSIGWTTNWGADFRDGEYTQQQCDDMLETLSENNVLSTGQAITFPVR
AGIAANSEEQLHRLVAAVNETNESTLTIWSSAGDYVDVDKLRKLIFSFGL
DRVYLDVPEELASQLNLDNPGNGASTFKSLFGFSFMSLCFWALSSWMQRL
*

BS16686.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7231-PF 300 CG7231-PF 1..300 1..300 1571 100 Plus
CG7231-PD 300 CG7231-PD 1..300 1..300 1571 100 Plus
CG7231-PC 300 CG7231-PC 1..300 1..300 1571 100 Plus
CG7231-PE 358 CG7231-PE 56..358 1..300 1557 99 Plus