Clone Sequence Records
BS16686.complete Sequence
935 bp assembled on 2010-02-09
GenBank Submission: KX800717
> BS16686.complete
GAAGTTATCAGTCGACATGATGAAGGTATGGGGCACAAATCTCACTGCCA
TTACCTGGGCCCATGCCGTCAACAGCCAGCAATTGCTGGACGAGGTCCTA
ACCGAAACCAGTGGCATTGACTTCATCGAAGCGGACATTGTGCTGGGCAA
ACTGAATGGCGATGGCGAGGACATGCCCATAATGGCCCATCCGCCGGCCA
ATGTCTCTGATCTTACGCTGTCGGAATTTCTCAACCAGATCATTAATTTC
AACCGTGATCATGAGGACCAAAAAAAGGGCGTTAAGCTCGACTTCAAGTC
GATCGAGGTATTCGAGGGTTCCCTGGACATTCTGGACGTGAATATTCCGA
ACCCTACCACGTATCCTGTGTGGATAAACGCCGATATTCTAAGTGGTCCC
GTGGAACAGAATAGAACCGTACCCGTTGATGCGGACCGATTCTTCGCCGG
CTGTATGCGCTACAAACAGGCAGTGCTCTCCATTGGCTGGACAACTAACT
GGGGAGCCGACTTCCGGGATGGCGAGTACACGCAGCAGCAGTGTGATGAC
ATGCTGGAAACGCTGAGCGAGAACAATGTCCTATCCACTGGCCAGGCCAT
AACCTTTCCCGTGCGCGCTGGCATTGCCGCCAACAGCGAGGAGCAACTGC
ATCGACTGGTGGCCGCGGTGAACGAGACAAACGAGAGCACCCTGACCATC
TGGTCGTCTGCCGGTGACTATGTGGATGTGGATAAGTTGCGCAAACTGAT
CTTCAGCTTCGGCTTGGATAGAGTCTATCTGGATGTGCCGGAGGAGCTGG
CCTCACAATTGAACCTGGACAATCCCGGCAACGGAGCCAGCACCTTCAAA
TCCCTGTTTGGCTTCAGTTTCATGAGCCTTTGTTTTTGGGCTCTGTCCAG
CTGGATGCAGCGGTTATAAAAGCTTTCTAGACCAT
BS16686.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 903 | CG7231-PF | 1..903 | 17..919 | 4515 | 100 | Plus |
CG7231-RD | 903 | CG7231-PD | 1..903 | 17..919 | 4515 | 100 | Plus |
CG7231-RC | 903 | CG7231-PC | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:54:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 1264 | CG7231-RF | 282..1184 | 17..919 | 4515 | 100 | Plus |
CG7231-RD | 1324 | CG7231-RD | 342..1244 | 17..919 | 4515 | 100 | Plus |
CG7231-RC | 1256 | CG7231-RC | 274..1176 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:54:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7986139..7986705 | 353..919 | 2835 | 100 | Plus |
2L | 23513712 | 2L | 7985834..7986075 | 111..352 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 7985675..7985770 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:54:10 has no hits.
BS16686.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:10:45 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RD | 442..1342 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:25 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 274..1174 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:20 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 887..1787 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:03 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 274..1174 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:07:03 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7985675..7985768 | 17..110 | 100 | -> | Plus |
2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
2L | 7986139..7986703 | 353..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:25 Download gff for
BS16686.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7985675..7985768 | 17..110 | 100 | -> | Plus |
arm_2L | 7985834..7986075 | 111..352 | 100 | -> | Plus |
arm_2L | 7986139..7986703 | 353..917 | 100 | | Plus |
BS16686.3prime Sequence
871 bp (831 high quality bases) assembled on 2007-05-15
> BS16686.3prime
ATGGTCTAGAAAGCTTTTATAACCGCTGCATCCAGCTGGACAGAGCCCAA
AAACAAAGGCTCATGAAACTGAAGCCAAACAGGGATTTGAAGGTGCTGGC
TCCGTTGCCGGGATTGTCCAGGTTCAATTGTGAGGCCAGCTCCTCCGGCA
CATCCAGATAGACTCTATCCAAGCCGAAGCTGAAGATCAGTTTGCGCAAC
TTATCCACATCCACATAGTCACCGGCAGACGACCAGATGGTCAGGGTGCT
CTCGTTTGTCTCGTTCACCGCGGCCACCAGTCGATGCAGTTGCTCCTCGC
TGTTGGCGGCAATGCCAGCGCGCACGGGAAAGGTTATGGCCTGGCCAGTG
GATAGGACATTGTTCTCGCTCAGCGTTTCCAGCATGTCATCACACTGCTG
CTGCGTGTACTCGCCATCCCGGAAGTCGGCTCCCCAGTTAGTTGTCCAGC
CAATGGAGAGCACTGCCTGTTTGTAGCGCATACAGCCGGCGAAGAATCGG
TCCGCATCAACGGGTACGGTTCTATTCTGTTCCACGGGACCACTTAGAAT
ATCGGCGTTTATCCACACAGGATACGTGGTAGGGTTCGGAATATTCACGT
CCAGAATGTCCAGGGAACCCTCGAATACCTCGATCGACTTGAAGTCGAGC
TTAACGCCCTTTTTTTGGTCCTCATGATCACGGTTGAAATTAATGATCTG
GTTGAGAAATTCCGACAGCGTAAGATCAGAGACATTGGCCGGCGGATGGG
CCATTATGGGCATGTCCTCGCCATCGCCATTCAGTTTGCCCAGCACAATG
TCCGCTTCGATGAAGTCAATGCCACTGGTTTCGGTTAGGACCTCGTCCAG
CAATTGCTGGCTGTTGACGGC
BS16686.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-PC | 903 | CG7231-RC | 49..903 | 871..17 | 4275 | 100 | Minus |
CG7231-PA | 912 | CG7231-RA | 346..912 | 583..17 | 2835 | 100 | Minus |
CG7231-PB | 1077 | CG7231-RB | 511..1077 | 583..17 | 2835 | 100 | Minus |
CG7231-PA | 912 | CG7231-RA | 49..336 | 871..584 | 1440 | 100 | Minus |
CG7231-PB | 1077 | CG7231-RB | 214..501 | 871..584 | 1440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-RF | 1264 | CG7231-RF | 330..1184 | 871..17 | 4275 | 100 | Minus |
CG7231-RD | 1324 | CG7231-RD | 390..1244 | 871..17 | 4275 | 100 | Minus |
CG7231-RC | 1256 | CG7231-RC | 322..1176 | 871..17 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:49:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7986139..7986705 | 583..17 | 2835 | 100 | Minus |
2L | 23513712 | 2L | 7985834..7986075 | 825..584 | 1210 | 100 | Minus |
2L | 23513712 | 2L | 7985723..7985770 | 871..824 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:49:17 has no hits.
BS16686.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:17 Download gff for
BS16686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-PC | 49..903 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:10 Download gff for
BS16686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 322..1176 | 17..871 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:56 Download gff for
BS16686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7231-RC | 322..1176 | 17..871 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:56 Download gff for
BS16686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7985723..7985768 | 826..871 | 100 | -> | Minus |
2L | 7985834..7986075 | 584..825 | 100 | -> | Minus |
2L | 7986139..7986705 | 17..583 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:10 Download gff for
BS16686.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7985723..7985768 | 826..871 | 100 | -> | Minus |
arm_2L | 7985834..7986075 | 584..825 | 100 | -> | Minus |
arm_2L | 7986139..7986705 | 17..583 | 100 | | Minus |
BS16686.pep Sequence
Translation from 16 to 918
> BS16686.pep
MMKVWGTNLTAITWAHAVNSQQLLDEVLTETSGIDFIEADIVLGKLNGDG
EDMPIMAHPPANVSDLTLSEFLNQIINFNRDHEDQKKGVKLDFKSIEVFE
GSLDILDVNIPNPTTYPVWINADILSGPVEQNRTVPVDADRFFAGCMRYK
QAVLSIGWTTNWGADFRDGEYTQQQCDDMLETLSENNVLSTGQAITFPVR
AGIAANSEEQLHRLVAAVNETNESTLTIWSSAGDYVDVDKLRKLIFSFGL
DRVYLDVPEELASQLNLDNPGNGASTFKSLFGFSFMSLCFWALSSWMQRL
*
BS16686.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7231-PF | 300 | CG7231-PF | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PD | 300 | CG7231-PD | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PC | 300 | CG7231-PC | 1..300 | 1..300 | 1571 | 100 | Plus |
CG7231-PE | 358 | CG7231-PE | 56..358 | 1..300 | 1557 | 99 | Plus |