Clone BS16687 Report

Search the DGRC for BS16687

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:166
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptLmpt-RA
Protein status:BS16687.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16687.5prime Sequence

768 bp (768 high quality bases) assembled on 2007-05-15

> BS16687.5prime
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GTAAAAGCTTTCTAGACC

BS16687.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PA 738 Lmpt-RA 1..738 17..754 3690 100 Plus
CG32171-PE 738 Lmpt-RE 1..738 17..754 3690 100 Plus
CG32171-PF 861 Lmpt-RF 343..861 236..754 2595 100 Plus
CG32171-PG 1680 Lmpt-RG 1162..1680 236..754 2595 100 Plus
CG32171-PH 1677 Lmpt-RH 1159..1677 236..754 2595 100 Plus
CG32171-PB 1680 Lmpt-RB 1162..1680 236..754 2595 100 Plus
CG32171-PD 1677 Lmpt-RD 1159..1677 236..754 2595 100 Plus
CG32171-PC 1020 Lmpt-RC 502..1020 236..754 2595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:43
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 1814 CG32171-RI 183..921 16..754 3695 100 Plus
Lmpt-RE 1832 CG42679-RE 201..939 16..754 3695 100 Plus
Lmpt-RA 1810 CG42679-RA 179..917 16..754 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16919479..16919703 16..240 1125 100 Plus
3L 28110227 3L 16921178..16921367 408..597 950 100 Plus
3L 28110227 3L 16920879..16921053 237..411 875 100 Plus
3L 28110227 3L 16921430..16921594 590..754 810 99.4 Plus
Blast to na_te.dros performed on 2015-02-13 13:17:42 has no hits.

BS16687.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:48 Download gff for BS16687.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PE 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:47 Download gff for BS16687.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..924 8..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:51 Download gff for BS16687.5prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..924 8..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:51 Download gff for BS16687.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16921437..16921601 597..763 97   Plus
3L 16921180..16921366 410..596 100 -> Plus
3L 16919472..16919702 8..239 98 -> Plus
3L 16920882..16921051 240..409 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:47 Download gff for BS16687.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16912572..16912802 8..239 98 -> Plus
arm_3L 16913982..16914151 240..409 100 -> Plus
arm_3L 16914280..16914466 410..596 100 -> Plus
arm_3L 16914537..16914701 597..763 97   Plus

BS16687.3prime Sequence

768 bp (768 high quality bases) assembled on 2007-05-15

> BS16687.3prime
ATGGTCTAGAAAGCTTTTACATCAGCTTCTGCTTGGCACAATCGGGGCAC
AGGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTT
GCAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACG
ATATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTG
CACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTC
GTCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGC
AGGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCC
GAGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTC
GTAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGG
TCCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCAC
TGCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCTTTGCTGGCACGCGG
ATCGCCGAGGCGACAATAATCGCCCAACTGGCAATAGAAGTTCCGGTTCT
CCTCCACGGCGGAGGCGTTGGGCAGAAACATGCTCAGCACGGCGATATCC
TCGTTATTATCCTTGGCCTTCTTGATCCGCTCCGCGCCAATGGTCTTGGT
TTGCAGGTGAAGTCGAGACTTCATTCTCGAACTAAGTACATCCACGTCGG
TCATGTCGACTGATAACT

BS16687.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG32171-PA 738 Lmpt-RA 1..738 754..17 3690 100 Minus
CG32171-PE 738 Lmpt-RE 1..738 754..17 3690 100 Minus
CG32171-PF 861 Lmpt-RF 343..861 535..17 2595 100 Minus
CG32171-PG 1680 Lmpt-RG 1162..1680 535..17 2595 100 Minus
CG32171-PH 1677 Lmpt-RH 1159..1677 535..17 2595 100 Minus
CG32171-PB 1680 Lmpt-RB 1162..1680 535..17 2595 100 Minus
CG32171-PD 1677 Lmpt-RD 1159..1677 535..17 2595 100 Minus
CG32171-PC 1020 Lmpt-RC 502..1020 535..17 2595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 1814 CG32171-RI 183..921 755..17 3695 100 Minus
Lmpt-RE 1832 CG42679-RE 201..939 755..17 3695 100 Minus
Lmpt-RA 1810 CG42679-RA 179..917 755..17 3695 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16919479..16919703 755..531 1125 100 Minus
3L 28110227 3L 16921178..16921367 363..174 950 100 Minus
3L 28110227 3L 16920879..16921053 534..360 875 100 Minus
3L 28110227 3L 16921430..16921594 181..17 810 99.4 Minus
Blast to na_te.dros performed on 2015-02-11 04:05:03 has no hits.

BS16687.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:27 Download gff for BS16687.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32171-PE 1..738 17..754 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:44 Download gff for BS16687.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..924 8..763 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:35:33 Download gff for BS16687.3prime
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 172..924 8..763 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:35:33 Download gff for BS16687.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16919472..16919702 532..763 98 -> Minus
3L 16920882..16921051 362..531 100 -> Minus
3L 16921180..16921366 175..361 100 -> Minus
3L 16921437..16921601 8..174 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:44 Download gff for BS16687.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16914537..16914701 8..174 97   Minus
arm_3L 16912572..16912802 532..763 98 -> Minus
arm_3L 16913982..16914151 362..531 100 -> Minus
arm_3L 16914280..16914466 175..361 100 -> Minus

BS16687.complete Sequence

770 bp assembled on 2007-05-07

GenBank Submission: FJ638182

> BS16687.complete
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GTAAAAGCTTTCTAGACCAT

BS16687.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 738 CG42679-PI 1..738 17..754 3690 100 Plus
Lmpt-RE 738 CG42679-PE 1..738 17..754 3690 100 Plus
Lmpt-RA 738 CG42679-PA 1..738 17..754 3690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-RI 1814 CG32171-RI 183..921 16..754 3695 100 Plus
Lmpt-RE 1832 CG42679-RE 201..939 16..754 3695 100 Plus
Lmpt-RA 1810 CG42679-RA 179..917 16..754 3695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16919479..16919703 16..240 1125 100 Plus
3L 28110227 3L 16921178..16921367 408..597 950 100 Plus
3L 28110227 3L 16920879..16921053 237..411 875 100 Plus
3L 28110227 3L 16921430..16921594 590..754 810 99.4 Plus
Blast to na_te.dros performed on 2014-11-27 08:21:15 has no hits.

BS16687.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:06 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RE 1..738 17..754 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:12 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RE 194..946 8..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:45 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 180..915 17..752 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:06 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RE 194..946 8..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:37 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
Lmpt-RA 180..915 17..752 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:37 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16919480..16919702 17..239 100 -> Plus
3L 16920882..16921051 240..409 100 -> Plus
3L 16921180..16921366 410..596 100 -> Plus
3L 16921437..16921592 597..752 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:45 Download gff for BS16687.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16912580..16912802 17..239 100 -> Plus
arm_3L 16913982..16914151 240..409 100 -> Plus
arm_3L 16914280..16914466 410..596 100 -> Plus
arm_3L 16914537..16914692 597..752 100   Plus

BS16687.pep Sequence

Translation from 16 to 753

> BS16687.pep
MTDVDVLSSRMKSRLHLQTKTIGAERIKKAKDNNEDIAVLSMFLPNASAV
EENRNFYCQLGDYCRLGDPRASKAGTKKMEYKTRQWHENCFCCCVCKTAI
GTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGGVTYKNEPWHRECF
TCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTACVKPITGIGGTRF
ISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCPDCAKQKLM*

BS16687.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Lmpt-PI 245 CG42679-PI 1..245 1..245 1371 100 Plus
Lmpt-PE 245 CG32171-PE 1..245 1..245 1371 100 Plus
Lmpt-PA 245 CG32171-PA 1..245 1..245 1371 100 Plus
Lmpt-PO 286 CG42679-PO 114..286 73..245 999 99.4 Plus
Lmpt-PF 286 CG32171-PF 114..286 73..245 999 99.4 Plus
Lmpt-PO 286 CG42679-PO 3..162 84..243 335 34 Plus
Lmpt-PO 286 CG42679-PO 2..97 142..239 219 39.8 Plus