Clone Sequence Records
BS16687.5prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS16687.5prime
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GTAAAAGCTTTCTAGACC
BS16687.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32171-PA | 738 | Lmpt-RA | 1..738 | 17..754 | 3690 | 100 | Plus |
CG32171-PE | 738 | Lmpt-RE | 1..738 | 17..754 | 3690 | 100 | Plus |
CG32171-PF | 861 | Lmpt-RF | 343..861 | 236..754 | 2595 | 100 | Plus |
CG32171-PG | 1680 | Lmpt-RG | 1162..1680 | 236..754 | 2595 | 100 | Plus |
CG32171-PH | 1677 | Lmpt-RH | 1159..1677 | 236..754 | 2595 | 100 | Plus |
CG32171-PB | 1680 | Lmpt-RB | 1162..1680 | 236..754 | 2595 | 100 | Plus |
CG32171-PD | 1677 | Lmpt-RD | 1159..1677 | 236..754 | 2595 | 100 | Plus |
CG32171-PC | 1020 | Lmpt-RC | 502..1020 | 236..754 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:17:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 1814 | CG32171-RI | 183..921 | 16..754 | 3695 | 100 | Plus |
Lmpt-RE | 1832 | CG42679-RE | 201..939 | 16..754 | 3695 | 100 | Plus |
Lmpt-RA | 1810 | CG42679-RA | 179..917 | 16..754 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16919479..16919703 | 16..240 | 1125 | 100 | Plus |
3L | 28110227 | 3L | 16921178..16921367 | 408..597 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16920879..16921053 | 237..411 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16921430..16921594 | 590..754 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:17:42 has no hits.
BS16687.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:00:48 Download gff for
BS16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32171-PE | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:40:47 Download gff for
BS16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..924 | 8..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:36:51 Download gff for
BS16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..924 | 8..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:36:51 Download gff for
BS16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16921437..16921601 | 597..763 | 97 | | Plus |
3L | 16921180..16921366 | 410..596 | 100 | -> | Plus |
3L | 16919472..16919702 | 8..239 | 98 | -> | Plus |
3L | 16920882..16921051 | 240..409 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:40:47 Download gff for
BS16687.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16912572..16912802 | 8..239 | 98 | -> | Plus |
arm_3L | 16913982..16914151 | 240..409 | 100 | -> | Plus |
arm_3L | 16914280..16914466 | 410..596 | 100 | -> | Plus |
arm_3L | 16914537..16914701 | 597..763 | 97 | | Plus |
BS16687.3prime Sequence
768 bp (768 high quality bases) assembled on 2007-05-15
> BS16687.3prime
ATGGTCTAGAAAGCTTTTACATCAGCTTCTGCTTGGCACAATCGGGGCAC
AGGATATCGGGTCCGTCGGTGATGAAGCCACGACCAACCAGACTAGCCTT
GCAGCTGGCACACACAAAGCAGTCGTGATGCCAGTGGCGATCCTCAAACG
ATATGAAGCGTGTGCCGCCAATGCCTGTTATGGGCTTCACACAGGCCGTG
CACCTTTTGGCAAAGAGCTCGCCAAAGCACTCCGCACAATAGGGCTTCTC
GTCGCGGCTGGTGAATCGCTGGCCAGCTAGCGTGATGTTGCAGTGGGTGC
AGGTGAAGCACTCGCGATGCCACGGCTCGTTCTTGTAGGTAACACCTCCC
GAGGTGATGACCTTATTGCACTTGATGCAGCGCGTGGCAAACTTCTCCTC
GTAGCAGCCGGCGCAATAGATCTCCTGCTCCCGCGGGATGAAGGACTTGG
TCCCAATGGCCGTCTTGCAGACGCAGCAGCAGAAGCAATTCTCGTGCCAC
TGCCTGGTTTTATACTCCATTTTCTTGGTGCCTGCTTTGCTGGCACGCGG
ATCGCCGAGGCGACAATAATCGCCCAACTGGCAATAGAAGTTCCGGTTCT
CCTCCACGGCGGAGGCGTTGGGCAGAAACATGCTCAGCACGGCGATATCC
TCGTTATTATCCTTGGCCTTCTTGATCCGCTCCGCGCCAATGGTCTTGGT
TTGCAGGTGAAGTCGAGACTTCATTCTCGAACTAAGTACATCCACGTCGG
TCATGTCGACTGATAACT
BS16687.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32171-PA | 738 | Lmpt-RA | 1..738 | 754..17 | 3690 | 100 | Minus |
CG32171-PE | 738 | Lmpt-RE | 1..738 | 754..17 | 3690 | 100 | Minus |
CG32171-PF | 861 | Lmpt-RF | 343..861 | 535..17 | 2595 | 100 | Minus |
CG32171-PG | 1680 | Lmpt-RG | 1162..1680 | 535..17 | 2595 | 100 | Minus |
CG32171-PH | 1677 | Lmpt-RH | 1159..1677 | 535..17 | 2595 | 100 | Minus |
CG32171-PB | 1680 | Lmpt-RB | 1162..1680 | 535..17 | 2595 | 100 | Minus |
CG32171-PD | 1677 | Lmpt-RD | 1159..1677 | 535..17 | 2595 | 100 | Minus |
CG32171-PC | 1020 | Lmpt-RC | 502..1020 | 535..17 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 1814 | CG32171-RI | 183..921 | 755..17 | 3695 | 100 | Minus |
Lmpt-RE | 1832 | CG42679-RE | 201..939 | 755..17 | 3695 | 100 | Minus |
Lmpt-RA | 1810 | CG42679-RA | 179..917 | 755..17 | 3695 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16919479..16919703 | 755..531 | 1125 | 100 | Minus |
3L | 28110227 | 3L | 16921178..16921367 | 363..174 | 950 | 100 | Minus |
3L | 28110227 | 3L | 16920879..16921053 | 534..360 | 875 | 100 | Minus |
3L | 28110227 | 3L | 16921430..16921594 | 181..17 | 810 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:05:03 has no hits.
BS16687.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:05:27 Download gff for
BS16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32171-PE | 1..738 | 17..754 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:27:44 Download gff for
BS16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..924 | 8..763 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:35:33 Download gff for
BS16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 172..924 | 8..763 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:35:33 Download gff for
BS16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16919472..16919702 | 532..763 | 98 | -> | Minus |
3L | 16920882..16921051 | 362..531 | 100 | -> | Minus |
3L | 16921180..16921366 | 175..361 | 100 | -> | Minus |
3L | 16921437..16921601 | 8..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:27:44 Download gff for
BS16687.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16914537..16914701 | 8..174 | 97 | | Minus |
arm_3L | 16912572..16912802 | 532..763 | 98 | -> | Minus |
arm_3L | 16913982..16914151 | 362..531 | 100 | -> | Minus |
arm_3L | 16914280..16914466 | 175..361 | 100 | -> | Minus |
BS16687.complete Sequence
770 bp assembled on 2007-05-07
GenBank Submission: FJ638182
> BS16687.complete
GAAGTTATCAGTCGACATGACCGACGTGGATGTACTTAGTTCGAGAATGA
AGTCTCGACTTCACCTGCAAACCAAGACCATTGGCGCGGAGCGGATCAAG
AAGGCCAAGGATAATAACGAGGATATCGCCGTGCTGAGCATGTTTCTGCC
CAACGCCTCCGCCGTGGAGGAGAACCGGAACTTCTATTGCCAGTTGGGCG
ATTATTGTCGCCTCGGCGATCCGCGTGCCAGCAAAGCAGGCACCAAGAAA
ATGGAGTATAAAACCAGGCAGTGGCACGAGAATTGCTTCTGCTGCTGCGT
CTGCAAGACGGCCATTGGGACCAAGTCCTTCATCCCGCGGGAGCAGGAGA
TCTATTGCGCCGGCTGCTACGAGGAGAAGTTTGCCACGCGCTGCATCAAG
TGCAATAAGGTCATCACCTCGGGAGGTGTTACCTACAAGAACGAGCCGTG
GCATCGCGAGTGCTTCACCTGCACCCACTGCAACATCACGCTAGCTGGCC
AGCGATTCACCAGCCGCGACGAGAAGCCCTATTGTGCGGAGTGCTTTGGC
GAGCTCTTTGCCAAAAGGTGCACGGCCTGTGTGAAGCCCATAACAGGCAT
TGGCGGCACACGCTTCATATCGTTTGAGGATCGCCACTGGCATCACGACT
GCTTTGTGTGTGCCAGCTGCAAGGCTAGTCTGGTTGGTCGTGGCTTCATC
ACCGACGGACCCGATATCCTGTGCCCCGATTGTGCCAAGCAGAAGCTGAT
GTAAAAGCTTTCTAGACCAT
BS16687.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 738 | CG42679-PI | 1..738 | 17..754 | 3690 | 100 | Plus |
Lmpt-RE | 738 | CG42679-PE | 1..738 | 17..754 | 3690 | 100 | Plus |
Lmpt-RA | 738 | CG42679-PA | 1..738 | 17..754 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-RI | 1814 | CG32171-RI | 183..921 | 16..754 | 3695 | 100 | Plus |
Lmpt-RE | 1832 | CG42679-RE | 201..939 | 16..754 | 3695 | 100 | Plus |
Lmpt-RA | 1810 | CG42679-RA | 179..917 | 16..754 | 3695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16919479..16919703 | 16..240 | 1125 | 100 | Plus |
3L | 28110227 | 3L | 16921178..16921367 | 408..597 | 950 | 100 | Plus |
3L | 28110227 | 3L | 16920879..16921053 | 237..411 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16921430..16921594 | 590..754 | 810 | 99.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:21:15 has no hits.
BS16687.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:06 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RE | 1..738 | 17..754 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:12 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RE | 194..946 | 8..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:45 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 180..915 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:06 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RE | 194..946 | 8..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:37 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lmpt-RA | 180..915 | 17..752 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:37 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16919480..16919702 | 17..239 | 100 | -> | Plus |
3L | 16920882..16921051 | 240..409 | 100 | -> | Plus |
3L | 16921180..16921366 | 410..596 | 100 | -> | Plus |
3L | 16921437..16921592 | 597..752 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:45 Download gff for
BS16687.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16912580..16912802 | 17..239 | 100 | -> | Plus |
arm_3L | 16913982..16914151 | 240..409 | 100 | -> | Plus |
arm_3L | 16914280..16914466 | 410..596 | 100 | -> | Plus |
arm_3L | 16914537..16914692 | 597..752 | 100 | | Plus |
BS16687.pep Sequence
Translation from 16 to 753
> BS16687.pep
MTDVDVLSSRMKSRLHLQTKTIGAERIKKAKDNNEDIAVLSMFLPNASAV
EENRNFYCQLGDYCRLGDPRASKAGTKKMEYKTRQWHENCFCCCVCKTAI
GTKSFIPREQEIYCAGCYEEKFATRCIKCNKVITSGGVTYKNEPWHRECF
TCTHCNITLAGQRFTSRDEKPYCAECFGELFAKRCTACVKPITGIGGTRF
ISFEDRHWHHDCFVCASCKASLVGRGFITDGPDILCPDCAKQKLM*
BS16687.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lmpt-PI | 245 | CG42679-PI | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PE | 245 | CG32171-PE | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PA | 245 | CG32171-PA | 1..245 | 1..245 | 1371 | 100 | Plus |
Lmpt-PO | 286 | CG42679-PO | 114..286 | 73..245 | 999 | 99.4 | Plus |
Lmpt-PF | 286 | CG32171-PF | 114..286 | 73..245 | 999 | 99.4 | Plus |
Lmpt-PO | 286 | CG42679-PO | 3..162 | 84..243 | 335 | 34 | Plus |
Lmpt-PO | 286 | CG42679-PO | 2..97 | 142..239 | 219 | 39.8 | Plus |