Clone Sequence Records
BS16690.complete Sequence
1991 bp assembled on 2009-12-07
GenBank Submission: KX806373
> BS16690.complete
GAAGTTATCAGTCGACATGGGACAGTACACGGCGTCGCAGCGCAAGAATG
TTAGGATCCTGCTCGTCGGCGACGCCGGGGTGGGTAAGACGTCGTTGATT
CTGTCTCTGGTCAGTGAGGAGTACCCGGAGGAGGTTCCGCCTAGGGCTGA
GGAGATTACCATTCCGGCGAACGTGACGCCCGAGCAGGTGCCCACCAGCA
TAGTTGACTTCTCGGCCGTGGAGCAGTCGGAGGATGCCCTGGCCGCCGAA
ATTAACAAGGCGCACGTGGTGTGCATAGTGTACGCCGTGGACGATGACGA
CACTTTGGATCGGATCACATCCCATTGGCTGCCGCTCGTCCGGGCCAAGT
GCAATCCCTCCCTGGACGGCGAGGGTGATGCCGAAGCGGAGGCGGAAGGA
GACACACAACGAGAGCCCATTCGGAAGCCAATCGTTCTGGTGGGTAACAA
AATAGACCTCATCGAGTATTCCACCATGGACAGCGTGCTGGCCATCATGG
AAGACTACCCCGAGATTGAGAGTTGCGTGGAGTGCTCTGCCAAGTCGCTG
CACAACATCTCCGAGATGTTTTACTACGCCCAGAAGGCTGTGCTGCACCC
GACTTCTCCCCTGTATATGATGGAAGAACAGGAGCTCACATCCGCCTGCA
AGAAGTCGCTGGTGCGCATTTTCAAGATCTGCGACATTGACGGGGACAAT
CTGTTGAACGATTACGAGCTGAATTTATTCCAGCGACGCTGTTTCAACAC
ACCACTCCAGCCGCAAATCCTTGATGAGGTGAAGGCCGTGATACAGAAAA
ATGTGCCCGATGGCATATACAACGATGCGGTCACCCTGAAGGGCTTCCTC
TTCTTACACTGCCTTTTCATTCAGCGGGGAAGGAACGAGACAACCTGGGC
GGTGTTACGGCGCTTTGGCTATAACGACCAGTTGGAGATGTGCCAGGAGT
ATCTTAGGCCACCGCTGAAAATACCGCCTGGCAGCAGCACAGAACTCTCG
CACCGCGGACAGCAGTTTCTGATTGCCGTGTTTGAGCGCTATGATCGCGA
TGGCGACGGAGCCTTATCACCTGAGGAGCACAAGATGCTCTTCAGCACAT
GCCCGGCTGCTCCGTGGTCCTACTCCACCGACATACGCAAGTCCTGCCCG
ATCAACGAGACAACTGGATGGGTGACACTGCACGGGTGGCTATGTCGGTG
GACACTGATGACGCTGATTGATGTGGTCAAAACAATGGAGTATTTGGCCT
ATTTGGGCTTCAATGTTCATGAAAACGACAGCCAGTTGGCGGCAATTCAC
GTAACTCGAGAGCGCCGCATCGATTTGGCCAAGCGCCAAAGCAGTCGGTC
CGTTTACAAGTGTCATGTGATTGGACCAAAGGGATCAGGAAAGACTGGAA
TGTGCAGGGGATTCCTGGTGGAGGATATGCACAAACTAATCGGAAAAGAG
TTTAAAACGAATGTGGTTAATTGCATCAACTCTGTGCAGGTGTATGGCCA
GGAAAAGCACCTCATTCTGCGTGACATAGACGTCAGGCATGCCCTCGATC
CCCTCCAGCCACAAGAAGTCAATTGCGATGTTGCCTGCCTAGTCTACGAC
TCATCTAATCCCCGTTCCTTTGAGTACGTGGCCCGCATCTACATCAAGTA
TTATGCGGAGAGCAAGATTCCAGTGATGATAGTCGGCACCAAGTGCGACA
TGGACGAACGCCGGCAGGACTATCTAATGCAGCCCTCTGAATTCTGTGAC
AAGTACAAGTTGCTGCCTCCGCATCTCTTCAGCCTGAAAACCAACAAAAA
AGAACTGTATACCAAGCTGGCCACAATGGCAGCGTTTCCTCACCTGAGGC
AATTCGGCCTGATGACGGAGGACCCCAAGCTGTGGTTAAAGGCGGGACTA
GGAGTGGCCGCAGCTACCATGCTGGGATTTATAGTGCTGAAAACGATAAG
TGCTGCCGGAGCCCACACCCGTTAGAAGCTTTCTAGACCAT
BS16690.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Miro-RD | 1959 | CG5410-PD | 1..1959 | 17..1975 | 9795 | 100 | Plus |
| Miro-RC | 1998 | CG5410-PC | 1..1825 | 17..1841 | 9125 | 100 | Plus |
| Miro-RF | 2022 | CG5410-PF | 1..1825 | 17..1841 | 9125 | 100 | Plus |
| Miro-RC | 1998 | CG5410-PC | 1863..1998 | 1840..1975 | 680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Miro-RD | 2673 | CG5410-RD | 175..2141 | 9..1975 | 9805 | 99.9 | Plus |
| Miro-RC | 2712 | CG5410-RC | 175..2007 | 9..1841 | 9135 | 99.9 | Plus |
| Miro-RF | 3791 | CG5410-RF | 1230..3062 | 9..1841 | 9135 | 99.9 | Plus |
| Miro-RC | 2712 | CG5410-RC | 2045..2180 | 1840..1975 | 680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24035614..24036820 | 1839..633 | 6035 | 100 | Minus |
| 3R | 32079331 | 3R | 24036931..24037556 | 634..9 | 3100 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24034894..24035029 | 1975..1840 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:17:23 has no hits.
BS16690.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:47:53 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 375..2333 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:40 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 183..2141 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:08:40 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 375..2333 | 17..1975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:12 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 183..2141 | 17..1975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:12 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24034894..24035029 | 1840..1975 | 100 | <- | Minus |
| 3R | 24035614..24036818 | 635..1839 | 100 | <- | Minus |
| 3R | 24036931..24037548 | 17..634 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:40 Download gff for
BS16690.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19860616..19860751 | 1840..1975 | 100 | <- | Minus |
| arm_3R | 19861336..19862540 | 635..1839 | 100 | <- | Minus |
| arm_3R | 19862653..19863270 | 17..634 | 100 | | Minus |
BS16690.3prime Sequence
875 bp (845 high quality bases) assembled on 2007-05-15
> BS16690.3prime
ATGGTCTAGAAAGCTTCTAACGGGTGTGGGCTCCGGCAGCACTTATCGTT
TTCAGCACTATAAATCCCAGCATGGTAGCTGCGGCCACTCCTAGTCCCGC
CTTTAACCACAGCTTGGGGTCCTCCGTCATCAGGCCGAATTGCCTCAGGT
GAGGAAACGCTGCCATTGTGGCCAGCTTGGTATACAGTTCTTTTTTGTTG
GTTTTCAGGCTGAAGAGATGCGGAGGCAGCAACTTGTACTTGTCACAGAA
TTCAGAGGGCTGCATTAGATAGTCCTGCCGGCGTTCGTCCATGTCGCACT
TGGTGCCGACTATCATCACTGGAATCTTGCTCTCCGCATAATACTTGATG
TAGATGCGGGCCACGTACTCAAAGGAACGGGGATTAGATGAGTCGTAGAC
TAGGCAGGCAACATCGCAATTGACTTCTTGTGGCTGGAGGGGATCGAGGG
CATGCCTGACGTCTATGTCACGCAGAATGAGGTGCTTTTCCTGGCCATAC
ACCTGCACAGAGTTGATGCAATTAACCACATTCGTTTTAAACTCTTTTCC
GATTAGTTTGTGCATATCCTCCACCAGGAATCCCCTGCACATTCCAGTCT
TTCCTGATCCCTTTGGTCCAATCACATGACACTTGTAAACGGACCGACTG
CTTTGGCGCTTGGCCAAATCGATGCGGCGCTCTCGAGTTACGTGAATTGC
CGCCAACTGGCTGTCGTTTTCATGAACATTGAAGCCCAAATAGGCCAAAT
ACTCCATTGTTTTGACCACATCAATCAGCGTCATCAGTGTCCACCGACAT
AGCCACCCGTGCAGTGTCACCCATCCAGTTGTCTCGTTGATCGGGCANGA
CTTGCGTATGTCGGTGGAGTAGGAC
BS16690.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5410-PD | 1959 | Miro-RD | 1101..1959 | 875..17 | 4276 | 99.8 | Minus |
| CG5410-PE | 2022 | Miro-RE | 1101..1825 | 875..151 | 3606 | 99.8 | Minus |
| CG5410-PE | 2022 | Miro-RE | 1886..2022 | 153..17 | 685 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Miro-RD | 2673 | CG5410-RD | 1283..2141 | 875..17 | 4284 | 99.9 | Minus |
| Miro-RC | 2712 | CG5410-RC | 1283..2007 | 875..151 | 3614 | 99.9 | Minus |
| Miro-RF | 3791 | CG5410-RF | 2338..3062 | 875..151 | 3614 | 99.9 | Minus |
| Miro-RC | 2712 | CG5410-RC | 2045..2180 | 152..17 | 680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24035614..24036336 | 153..875 | 3604 | 99.9 | Plus |
| 3R | 32079331 | 3R | 24034894..24035029 | 17..152 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:09:12 has no hits.
BS16690.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:39 Download gff for
BS16690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5410-PD | 1101..1959 | 17..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:20 Download gff for
BS16690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 1283..2149 | 9..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:05 Download gff for
BS16690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RD | 1283..2149 | 9..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:05 Download gff for
BS16690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24034886..24035029 | 9..152 | 97 | <- | Plus |
| 3R | 24035614..24036336 | 153..875 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:20 Download gff for
BS16690.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19860608..19860751 | 9..152 | 97 | <- | Plus |
| arm_3R | 19861336..19862058 | 153..875 | 99 | | Plus |
BS16690.5prime Sequence
850 bp (741 high quality bases) assembled on 2007-05-15
> BS16690.5prime
GAAGTTATCAGTCGACATGGGACAGTACACGGCGTCGCAGCGCAAGAATG
TTAGGATCCTGCTCGTCGGCGACGCCGGGGTGGGTAAGACGTCGTTGATT
CTGTCTCTGGTCAGTGAGGAGTACCCGGAGGAGGTTCCGCCTAGGGCTGA
GGAGATTACCATTCCGGCGAACGTGACGCCCGAGCAGGTGCCCACCAGCA
TAGTTGACTTCTCGGCCGTGGAGCAGTCGGAGGATGCCCTGGCCGCCGAA
ATTAACAAGGCGCACGTGGTGTGCATAGTGTACGCCGTGGACGATGACGA
CACTTTGGATCGGATCACATCCCATTGGCTGCCGCTCGTCCGGGCCAAGT
GCAATCCCTCCCTGGACGGCGAGGGTGATGCCGAAGCGGAGGCGGAAGGA
GACACACAACGAGAGCCCATTCGGAAGCCAATCGTTCTGGTGGGTAACAA
AATAGACCTCATCGAGTATTCCACCATGGACAGCGTGCTGGCCATCATGG
AAGACTACCCCGAGATTGAGAGTTGCGTGGAGTGCTCTGCCAAGTCGCTG
CACAACATCTCCGAGATGTTTTACTACGCCCAGAAGGCTGTGCTGCACCC
GACTTCTCCCCTGTATATGATGGAAGAACAGGAGCTCACATCCGCCTGCA
AGAAGTCGCTGGTGCGCATTTTCAAGATCTGCGACATTGACGGGGACAAT
CTGTTGAACGATTACGAGCTGAATTTATTCCAGCGACGCTGTTTNCACAC
ACCACTCCAGCCGCAAATCCTTGATGAGGTGAAGGCCGTGATACAGAAAA
ATGTGCCCGATGGCATATACAACGATGCGGTCACCCTGAAGGGCTTCCTC
BS16690.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5410-PD | 1959 | Miro-RD | 1..834 | 17..850 | 4126 | 99.7 | Plus |
| CG5410-PE | 2022 | Miro-RE | 1..834 | 17..850 | 4126 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Miro-RC | 2712 | CG5410-RC | 175..1016 | 9..850 | 4154 | 99.5 | Plus |
| Miro-RF | 3791 | CG5410-RF | 1230..2071 | 9..850 | 4154 | 99.5 | Plus |
| Miro-RE | 2736 | CG5410-RE | 175..1016 | 9..850 | 4154 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:16:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24036931..24037556 | 634..9 | 3100 | 99.7 | Minus |
| 3R | 32079331 | 3R | 24036603..24036820 | 850..633 | 1064 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:16:02 has no hits.
BS16690.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:02:35 Download gff for
BS16690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5410-PE | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:41:59 Download gff for
BS16690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RE | 171..1016 | 3..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:22:39 Download gff for
BS16690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Miro-RE | 171..1016 | 3..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:22:39 Download gff for
BS16690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24036603..24036818 | 635..850 | 99 | <- | Minus |
| 3R | 24036931..24037560 | 3..634 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:41:59 Download gff for
BS16690.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19862325..19862540 | 635..850 | 99 | <- | Minus |
| arm_3R | 19862653..19863282 | 3..634 | 99 | | Minus |
BS16690.pep Sequence
Translation from 16 to 1974
> BS16690.pep
MGQYTASQRKNVRILLVGDAGVGKTSLILSLVSEEYPEEVPPRAEEITIP
ANVTPEQVPTSIVDFSAVEQSEDALAAEINKAHVVCIVYAVDDDDTLDRI
TSHWLPLVRAKCNPSLDGEGDAEAEAEGDTQREPIRKPIVLVGNKIDLIE
YSTMDSVLAIMEDYPEIESCVECSAKSLHNISEMFYYAQKAVLHPTSPLY
MMEEQELTSACKKSLVRIFKICDIDGDNLLNDYELNLFQRRCFNTPLQPQ
ILDEVKAVIQKNVPDGIYNDAVTLKGFLFLHCLFIQRGRNETTWAVLRRF
GYNDQLEMCQEYLRPPLKIPPGSSTELSHRGQQFLIAVFERYDRDGDGAL
SPEEHKMLFSTCPAAPWSYSTDIRKSCPINETTGWVTLHGWLCRWTLMTL
IDVVKTMEYLAYLGFNVHENDSQLAAIHVTRERRIDLAKRQSSRSVYKCH
VIGPKGSGKTGMCRGFLVEDMHKLIGKEFKTNVVNCINSVQVYGQEKHLI
LRDIDVRHALDPLQPQEVNCDVACLVYDSSNPRSFEYVARIYIKYYAESK
IPVMIVGTKCDMDERRQDYLMQPSEFCDKYKLLPPHLFSLKTNKKELYTK
LATMAAFPHLRQFGLMTEDPKLWLKAGLGVAAATMLGFIVLKTISAAGAH
TR*
BS16690.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Miro-PD | 652 | CG5410-PD | 1..652 | 1..652 | 3431 | 100 | Plus |
| Miro-PC | 665 | CG5410-PC | 1..665 | 1..652 | 3407 | 98 | Plus |
| Miro-PF | 673 | CG5410-PF | 1..673 | 1..652 | 3399 | 96.9 | Plus |
| Miro-PE | 673 | CG5410-PE | 1..673 | 1..652 | 3399 | 96.9 | Plus |
