Clone Sequence Records
BS16701.3prime Sequence
342 bp (342 high quality bases) assembled on 2007-05-15
> BS16701.3prime
ATGGTCTAGAAAGCTTCTACGGGTAGAGGGGAACGGGGGGAAACGGGGTA
GGGCTTAGGGGTGTGACAGAGGGGGTGGGGCTGGGACTAGGGGTGGCGAA
TTGGAACCCAAAAACTGCTGAGCTCAAAGCTGAGCATAGACCAAAAGGCG
ACAGAGGAGAAGAAACTGAAGGCGATGGCAAAAGTTGCAGCTGCACTGGA
AGAAAATCGTTGAAAACCTTAGAATTGCATGCCAAAAAGTAAACAAGAAT
CTTTTGAATCCCCAAAATAAGCTTTAAGAAGTGCATAGGATAATATAAAT
TTGAGAGATATTGAATCTTATATCTCATGTCGACTGATAACT
BS16701.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31047-PA | 312 | CG31047-RA | 1..308 | 328..21 | 1540 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 06:08:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985786..28986097 | 17..328 | 1545 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-13 06:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6066..6202 | 181..317 | 117 | 56.8 | Plus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 267..330 | 106 | 65.6 | Plus |
BS16701.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:30 Download gff for
BS16701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31047-PA | 1..312 | 17..328 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:29 Download gff for
BS16701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986100 | 17..333 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:29 Download gff for
BS16701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986100 | 17..333 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:03 Download gff for
BS16701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811822 | 17..333 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:03 Download gff for
BS16701.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811822 | 17..333 | 98 | | Plus |
BS16701.5prime Sequence
342 bp (342 high quality bases) assembled on 2007-05-15
> BS16701.5prime
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTTAGAAGCTTTCTAGACC
BS16701.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31047-PA | 312 | CG31047-RA | 1..312 | 17..328 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 04:09:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985786..28986097 | 328..17 | 1560 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 04:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6066..6202 | 164..28 | 117 | 56.8 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 78..15 | 106 | 65.6 | Minus |
BS16701.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:44 Download gff for
BS16701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31047-PA | 1..312 | 17..328 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for
BS16701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986100 | 12..328 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for
BS16701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986100 | 12..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:21 Download gff for
BS16701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811822 | 12..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:21 Download gff for
BS16701.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811822 | 12..328 | 99 | | Minus |
BS16701.complete Sequence
344 bp assembled on 2007-05-07
> BS16701.complete
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTTAGAAGCTTTCTAGACCAT
BS16701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:47:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 16:47:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28985786..28986097 | 328..17 | 1560 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:47:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TART-A | 13424 | TART-A 13424bp | 6066..6202 | 164..28 | 117 | 56.8 | Minus |
blood | 7410 | blood BLOOD 7410bp | 3226..3286 | 78..15 | 106 | 65.6 | Minus |
BS16701.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:07 Download gff for
BS16701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lcp65Ad-RA | 10..28 | 160..178 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:30:07 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:35 Download gff for
BS16701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986097 | 17..328 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:35 Download gff for
BS16701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28985786..28986097 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:47 Download gff for
BS16701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811819 | 17..328 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:47 Download gff for
BS16701.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24811508..24811819 | 17..328 | 100 | | Minus |
BS16701.pep Sequence
Translation from 16 to 327
> BS16701.pep
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYP*
Sequence BS16701.pep has no blast hits.