Clone BS16701 Report

Search the DGRC for BS16701

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptobsolete transcript model
Protein status:BS16701.pep: validated full length
Sequenced Size:16

Clone Sequence Records

BS16701.3prime Sequence

342 bp (342 high quality bases) assembled on 2007-05-15

> BS16701.3prime
ATGGTCTAGAAAGCTTCTACGGGTAGAGGGGAACGGGGGGAAACGGGGTA
GGGCTTAGGGGTGTGACAGAGGGGGTGGGGCTGGGACTAGGGGTGGCGAA
TTGGAACCCAAAAACTGCTGAGCTCAAAGCTGAGCATAGACCAAAAGGCG
ACAGAGGAGAAGAAACTGAAGGCGATGGCAAAAGTTGCAGCTGCACTGGA
AGAAAATCGTTGAAAACCTTAGAATTGCATGCCAAAAAGTAAACAAGAAT
CTTTTGAATCCCCAAAATAAGCTTTAAGAAGTGCATAGGATAATATAAAT
TTGAGAGATATTGAATCTTATATCTCATGTCGACTGATAACT

BS16701.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31047-PA 312 CG31047-RA 1..308 328..21 1540 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 06:08:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985786..28986097 17..328 1545 99.7 Plus
Blast to na_te.dros performed 2015-02-13 06:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6066..6202 181..317 117 56.8 Plus
blood 7410 blood BLOOD 7410bp 3226..3286 267..330 106 65.6 Plus

BS16701.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:30 Download gff for BS16701.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31047-PA 1..312 17..328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:29 Download gff for BS16701.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986100 17..333 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:29 Download gff for BS16701.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986100 17..333 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:03 Download gff for BS16701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811822 17..333 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:50:03 Download gff for BS16701.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811822 17..333 98   Plus

BS16701.5prime Sequence

342 bp (342 high quality bases) assembled on 2007-05-15

> BS16701.5prime
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTTAGAAGCTTTCTAGACC

BS16701.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG31047-PA 312 CG31047-RA 1..312 17..328 1560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed on 2015-02-11 04:09:25 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985786..28986097 328..17 1560 100 Minus
Blast to na_te.dros performed 2015-02-11 04:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6066..6202 164..28 117 56.8 Minus
blood 7410 blood BLOOD 7410bp 3226..3286 78..15 106 65.6 Minus

BS16701.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:44 Download gff for BS16701.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31047-PA 1..312 17..328 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for BS16701.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986100 12..328 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:08 Download gff for BS16701.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986100 12..328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:21 Download gff for BS16701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811822 12..328 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:21 Download gff for BS16701.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811822 12..328 99   Minus

BS16701.complete Sequence

344 bp assembled on 2007-05-07

> BS16701.complete
GAAGTTATCAGTCGACATGAGATATAAGATTCAATATCTCTCAAATTTAT
ATTATCCTATGCACTTCTTAAAGCTTATTTTGGGGATTCAAAAGATTCTT
GTTTACTTTTTGGCATGCAATTCTAAGGTTTTCAACGATTTTCTTCCAGT
GCAGCTGCAACTTTTGCCATCGCCTTCAGTTTCTTCTCCTCTGTCGCCTT
TTGGTCTATGCTCAGCTTTGAGCTCAGCAGTTTTTGGGTTCCAATTCGCC
ACCCCTAGTCCCAGCCCCACCCCCTCTGTCACACCCCTAAGCCCTACCCC
GTTTCCCCCCGTTCCCCTCTACCCTTAGAAGCTTTCTAGACCAT

BS16701.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-26 16:47:32 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-26 16:47:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:47:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 28985786..28986097 328..17 1560 100 Minus
Blast to na_te.dros performed 2014-11-26 16:47:31
Subject Length Description Subject Range Query Range Score Percent Strand
TART-A 13424 TART-A 13424bp 6066..6202 164..28 117 56.8 Minus
blood 7410 blood BLOOD 7410bp 3226..3286 78..15 106 65.6 Minus

BS16701.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:07 Download gff for BS16701.complete
Subject Subject Range Query Range Percent Splice Strand
Lcp65Ad-RA 10..28 160..178 94   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 23:30:07 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:35 Download gff for BS16701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986097 17..328 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:27:35 Download gff for BS16701.complete
Subject Subject Range Query Range Percent Splice Strand
3R 28985786..28986097 17..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:47 Download gff for BS16701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811819 17..328 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:09:47 Download gff for BS16701.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 24811508..24811819 17..328 100   Minus

BS16701.pep Sequence

Translation from 16 to 327

> BS16701.pep
MRYKIQYLSNLYYPMHFLKLILGIQKILVYFLACNSKVFNDFLPVQLQLL
PSPSVSSPLSPFGLCSALSSAVFGFQFATPSPSPTPSVTPLSPTPFPPVP
LYP*
Sequence BS16701.pep has no blast hits.