Clone BS16702 Report

Search the DGRC for BS16702

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG6686-RB
Protein status:BS16702.pep: full length peptide match
Sequenced Size:2927

Clone Sequence Records

BS16702.complete Sequence

2927 bp assembled on 2009-12-07

GenBank Submission: KX805897

> BS16702.complete
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTCCGACTGCGTGGAGGTGCCGGTACAGGCGCA
GGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCGTCCAATCGTG
ACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAGAGAAAGGGAG
CGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGGAAAAGGAGCG
CGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAGGAGCGCGAGA
GAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGAACGCCTTAGG
GAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGCTCACAGCTCC
TCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCTAGGCGAGAGC
GTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGGCAGAGAACGT
GAAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGCCAGCATCGTC
GTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCTCGTTCCTTCT
CGCCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCATTACGGAGACG
AACAAACTTCGCGCCAAGCTGGGTCTGAAGCCACTCGAAGTTGATAGTGG
TCCCAGCAAGGCAGGCCCTCCGCCTGGAAGCAGTAGTCAAGGCGAGATCA
AAAAACCCCATGGCGAGGCCGATCTCTCCTCGTACAAGGATGAGTGGGGC
GAGTTCTTGCACAAGCCGGCCGACAATCTAAAGGAGAAAAGGGAGGCAGA
GAAGCTGCGCGAGAAACTCAAACAGCGCAAGGAGAAACGATTCTTAGAGG
AGCGCCTGGCTCGCATCAAAACACTGGGAGAGTCTGATGAGGAAACTGAC
AATGTGTCCAAGTGGGTGGACAAGAACAAGCGGGTTGTCAACGAACGCGA
GGAGGCGATGCGTAAGGCCAAAGAGTTGGAGGAACTGGATGAGGCCTTTG
GTGTTTCGGAGATTCTCGAGCAAGAGAAAACCAAAGCTCGTCAGCGAGCA
TATGGCGATAGCAATCTAAAGGGCCTGCGTGTGGATCATGATATGGATGA
TTTCGGCGAAGGACGCACTGTTATTCTAACTCTTAAGGATCAAGATGTGC
TTAACGAGGAGGAAGGCGACACTCTAGTCAATGTTAACATGGTCGACGAA
GAGCGCTATAAGAAGAATGTGGCCAACAAGAAGCAGAATCCGCTCAGTTA
TGGTTATAACGTATACGAGGAGCAGTACGATGAATTGGGCAATCCCATCG
AACGTTCAGTGCTGGAGAAGTACGATGATGAAATGGAAGGTCAGCCGAAA
AAGCGCAAGAACTTTGTGATTGGTGAGAATATGGATGAGGAGCGGGAGCA
CAGACGCAAGCTCCTGGAGATTAAGACCAAATTAGCCGGCAAGCGTTTGG
AAACCTTGGAGGACACCAATCTGCAGCTAGCATCGGACACTTACAGTGCA
GAAGAGTTGGCCAAATTTAAAAAGCCAAAGAAAAAGGTTAAGAAACTTCG
GCAGAAACTTAAAGCCGAGGATCTTGCGCCTTTGGCGATGGGCGAAGCAT
CAGGTTCTTCAGACTTTGGTAGTCGAGGTGGACGTTATCGTGATCACGAA
GATGCGGAAATGGAAGAGTTTAAACCCCAAATAAAAGTGGAAGTAGAGGA
TGATGATTTGGAACGTGTACTTGCCAAGGCTCGCAAACTAAAACAAAAGG
AGAATATCATCAAGAAGCCTTTGCCCGTCGACTTCGAAAGTATACAGCGG
GAGATAAAACCCGAACATGTGGAGGACACCGCATCAGGTGTGGTCCTTAC
CGGCGTCGATGGCAACATTGTCTTGAACGCCACAGCTGAGTTTTGCCGCA
CTCTGGGTGACATTCCCACGTACGGTATGGCGGGCAACCGTAATGAGGAC
TCCAATGACATGATGGACTTTGACAAGACCGAACAGCCGGAGGAGCATAT
GGAAACACATACCGATGAGCCTGCCCTGAGTCACGGCACCTGGAATTCGG
TCAATCCCGATGAAGTCATGCAGCCCGCCGATTTGGATAATCTGGGTGAA
GACCTGGAAGATCGTGCCATTCTAGACGAGGAGCCCGATGTGGGAGCTGG
TGTAGCGAATGCTCTGCGATTGGCGCTGTCCAAGGGTTACCTTGAAAAGG
AGGAAAAGAACAGACCTAGCAACACAAAAATGGCCCATCTGCAGGCCAAG
AACTATTCCATTGAGGATAAAGCGGCTGGTGAGGACGAGAAGGTTGGCCG
TCGCGATCGCTTCCACTTTGGACCGATTACAGACTTTAAGGACAAGGAGA
CCTTCAAGCCCAATGTCAAGTTGGATTATATCGATGACAATGGCCGCATA
TTGAACCTCAAAGAGGCTTTCCGCTACTTGTCACATAAGTTCCATGGCAA
GGGGCCCGGCAAGAATAAGATTGAGAAGCGTCTCAAGAAAATGGAGCAGG
ATGGGCTAATGAAAACCATGAGTTCGACAGACACACCCTTGGGCACACTG
ACCATGTTGCAGCAGAAGCAAAAGGAGACGAAGACCGCTTACGTGGTGCT
CAGTGGCAACAACAAAAATGTACCAGGTGTCAGTGGCTCCGCAATAGCCA
AATTTAAGTAGAAGCTTTCTAGACCAT

BS16702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 2895 CG6686-PB 1..2895 17..2911 14475 100 Plus
CG6686-RA 2913 CG6686-PA 1..2913 17..2911 14260 99.4 Plus
CG6686-RC 330 CG6686-PC 1..252 17..268 1260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 3169 CG6686-RB 95..2990 17..2912 14480 100 Plus
CG6686-RA 3187 CG6686-RA 95..3008 17..2912 14265 99.4 Plus
CG6686-RC 3192 CG6686-RC 364..3013 263..2912 13235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986437..11987387 1217..267 4755 100 Minus
2L 23513712 2L 11985007..11985775 2529..1761 3830 99.9 Minus
2L 23513712 2L 11985833..11986382 1764..1215 2750 100 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
2L 23513712 2L 11984725..11984951 2755..2529 1135 100 Minus
2L 23513712 2L 11984506..11984663 2912..2755 790 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:56:13 has no hits.

BS16702.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:43:20 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 91..2985 17..2911 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:01:43 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..2989 17..2911 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:43 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 91..2985 17..2911 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:00:10 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..2989 17..2911 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:00:10 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11984725..11984950 2530..2755 100 <- Minus
2L 11984507..11984662 2756..2911 100 <- Minus
2L 11985007..11985771 1765..2529 100 <- Minus
2L 11985833..11986380 1217..1764 100 <- Minus
2L 11986438..11987387 267..1216 100 <- Minus
2L 11987696..11987945 17..266 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:01:43 Download gff for BS16702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984507..11984662 2756..2911 100 <- Minus
arm_2L 11984725..11984950 2530..2755 100 <- Minus
arm_2L 11985007..11985771 1765..2529 100 <- Minus
arm_2L 11985833..11986380 1217..1764 100 <- Minus
arm_2L 11986438..11987387 267..1216 100 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BS16702.3prime Sequence

892 bp (803 high quality bases) assembled on 2007-05-15

> BS16702.3prime
ATGGTCTAGAAAGCTTCTACTTAAATTTGGCTATTGCGGAGCCACTGACA
CCTGGTACATTTTTGTTGTTGCCACTGAGCACCACGTAAGCGGTCTTCGT
CTCCTTTTGCTTCTGCTGCAACATGGTCAGTGTGCCCAAGGGTGTGTCTG
TCGAACTCATGGTTTTCATTAGCCCATCCTGCTCCATTTTCTTGAGACGC
TTCTCAATCTTATTCTTGCCGGGCCCCTTGCCATGGAACTTATGTGACAA
GTAGCGGAAAGCCTCTTTGAGGTTCAATATGCGGCCATTGTCATCGATAT
AATCCAACTTGACATTGGGCTTGAAGGTCTCCTTGTCCTTAAAGTCTGTA
ATCGGTCCAAAGTGGAAGCGATCGCGACGGCCAACCTTCTCGTCCTCACC
AGCCGCTTTATCCTCAATGGAATAGTTCTTGGCCTGCAGATGGGCCATTT
TTGTGTTGCTAGGTCTGTTCTTTTCCTCCTTTTCAAGGTAACCCTTGGAC
AGCGCCAATCGCAGAGCATTCGCTACACCAGCTCCCACATCGGGCTCCTC
GTCTAGAATGGCACGATCTTCCAGGTCTTCACCCAGATTATCCAAATCGG
CGGGCTGCATGACTTCATCGGGATTGACCGAATTCCAGGTGCCGTGACTC
AGGGCAGGCTCATCGGTATGTGTTTCCATATGCTCCTCCGGCTGTTCGGT
CTTGTCAAAGTCCATCATGTCATTGGAGTCCTCATTACGGTTGCCCGCCA
TACCGTACGTGGGAATGTCACCCAGAGTGCGGCAAAACTCAGCTGTGGCG
TTCAAGACAATGTTGCCATCGACGCCGGTAAGGACCACACCTGATGCGGT
GTCCTCCACATGTTCGGGTTTTATCTCCCGCTGTATACTTTC

BS16702.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PA 2913 CG6686-RA 2038..2913 892..17 4380 100 Minus
CG6686-PB 2895 CG6686-RB 2020..2895 892..17 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RC 3192 CG6686-RC 2137..3013 892..16 4385 100 Minus
CG6686-RB 3169 CG6686-RB 2114..2990 892..16 4385 100 Minus
CG6686-RA 3187 CG6686-RA 2132..3008 892..16 4385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11985007..11985500 399..892 2470 100 Plus
2L 23513712 2L 11984725..11984951 173..399 1135 100 Plus
2L 23513712 2L 11984506..11984663 16..173 790 100 Plus
Blast to na_te.dros performed 2015-02-13 15:17:13
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 225..271 140..94 109 70.2 Minus

BS16702.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:40 Download gff for BS16702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PB 2020..2895 17..892 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:17 Download gff for BS16702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2132..3008 16..892 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:07:43 Download gff for BS16702.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RA 2132..3008 16..892 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:07:43 Download gff for BS16702.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11984506..11984662 16..172 100 <- Plus
2L 11984725..11984950 173..398 100 <- Plus
2L 11985007..11985500 399..892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:17 Download gff for BS16702.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11984506..11984662 16..172 100 <- Plus
arm_2L 11984725..11984950 173..398 100 <- Plus
arm_2L 11985007..11985500 399..892 100   Plus

BS16702.5prime Sequence

875 bp (755 high quality bases) assembled on 2007-05-15

> BS16702.5prime
GAAGTTATCAGTCGACATGGGTTCCTCGTCGTCGGGAAAGAAACACAAGA
AGGACAAGAAGAACCGTCATCGCTCGCGATCGTCGGAGCGACCGCGGCGC
GTCACAGAGGACGAGGATGTCACACTGGATCTCACCGACGACTCCTCGTC
GCGGCACAGACACCACAAGCACAAGAAGCACAAGGAGCACCGCCACAAGC
ACCACAAGCAAAAGGAGCGCGAGCGCGCGAACGAGGTCATCTCCCTAGAG
GAATCGGACTCGGATAGTTCCGACTGCGTGGAGGTGCCGGTACAGGCGCA
GGTGCAGGCGCAGGCCAAGTTGAGGGACGCCAGAGAATCGTCCAATCGTG
ACAAGGAGCGGGATTCTGGACGCGATCGTGAACTCCTAAGAGAAAGGGAG
CGAGAACGAGATCGTGAGCGGGAGAGGGATCGGGATCGGGAAAAGGAGCG
CGAACGGGAGCGTGAGAAGGAGCGTCTCAGGGAGCGGGAGGAGCGCGAGA
GAGAGCGTGAGAAGGAACGTATCAGAGAACGCGAGAAAGAACGCCTTAGG
GAGCGCGAGAGGGAGCGGGAACGCGAACGTGTACGGGAGCTCACAGCTCC
TCCACCACCCCAAATCTCCAAGCATGCCGAATATGAGTCTAGGCGAGAGC
GTGAGATCGAACGGGAACGGGACGCCCGCAAGCGATCTGGCAGAGAACGT
GAAAGGGAACGTAATAGGGAACGGTCCCGATCCCAGTCGCCAGCATCGTC
GTCGCGTAAACCAGCCACTAAGGAACGCGAACCATCGTCTCGTTCCTTCT
CGCCAATACCAGAAAACGGAGCCGGCGATGTCCTGTCCATTACGGAGACG
AACAAACTTCGCGCCNAGCTGGGTC

BS16702.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PB 2895 CG6686-RB 1..859 17..875 4276 99.8 Plus
CG6686-PA 2913 CG6686-RA 269..877 267..875 3026 99.8 Plus
CG6686-PA 2913 CG6686-RA 1..253 17..269 1265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:09:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-RB 3169 CG6686-RB 95..953 17..875 4284 99.9 Plus
CG6686-RA 3187 CG6686-RA 95..971 17..875 4094 97.8 Plus
CG6686-RC 3192 CG6686-RC 95..976 17..875 4044 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11986779..11987387 875..267 3034 99.8 Minus
2L 23513712 2L 11987694..11987945 268..17 1260 100 Minus
Blast to na_te.dros performed on 2015-02-11 04:09:39 has no hits.

BS16702.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:07:54 Download gff for BS16702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-PB 1..859 17..875 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:24 Download gff for BS16702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..953 17..875 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:12 Download gff for BS16702.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6686-RB 95..953 17..875 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:12 Download gff for BS16702.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11987696..11987945 17..266 100   Minus
2L 11986779..11987387 267..875 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:24 Download gff for BS16702.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11986779..11987387 267..875 99 <- Minus
arm_2L 11987696..11987945 17..266 100   Minus

BS16702.pep Sequence

Translation from 16 to 2910

> BS16702.pep
MGSSSSGKKHKKDKKNRHRSRSSERPRRVTEDEDVTLDLTDDSSSRHRHH
KHKKHKEHRHKHHKQKERERANEVISLEESDSDSSDCVEVPVQAQVQAQA
KLRDARESSNRDKERDSGRDRELLRERERERDRERERDRDREKERERERE
KERLREREEREREREKERIREREKERLRERERERERERVRELTAPPPPQI
SKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPA
TKEREPSSRSFSPIPENGAGDVLSITETNKLRAKLGLKPLEVDSGPSKAG
PPPGSSSQGEIKKPHGEADLSSYKDEWGEFLHKPADNLKEKREAEKLREK
LKQRKEKRFLEERLARIKTLGESDEETDNVSKWVDKNKRVVNEREEAMRK
AKELEELDEAFGVSEILEQEKTKARQRAYGDSNLKGLRVDHDMDDFGEGR
TVILTLKDQDVLNEEEGDTLVNVNMVDEERYKKNVANKKQNPLSYGYNVY
EEQYDELGNPIERSVLEKYDDEMEGQPKKRKNFVIGENMDEEREHRRKLL
EIKTKLAGKRLETLEDTNLQLASDTYSAEELAKFKKPKKKVKKLRQKLKA
EDLAPLAMGEASGSSDFGSRGGRYRDHEDAEMEEFKPQIKVEVEDDDLER
VLAKARKLKQKENIIKKPLPVDFESIQREIKPEHVEDTASGVVLTGVDGN
IVLNATAEFCRTLGDIPTYGMAGNRNEDSNDMMDFDKTEQPEEHMETHTD
EPALSHGTWNSVNPDEVMQPADLDNLGEDLEDRAILDEEPDVGAGVANAL
RLALSKGYLEKEEKNRPSNTKMAHLQAKNYSIEDKAAGEDEKVGRRDRFH
FGPITDFKDKETFKPNVKLDYIDDNGRILNLKEAFRYLSHKFHGKGPGKN
KIEKRLKKMEQDGLMKTMSSTDTPLGTLTMLQQKQKETKTAYVVLSGNNK
NVPGVSGSAIAKFK*

BS16702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6686-PB 964 CG6686-PB 1..964 1..964 4958 100 Plus
CG6686-PA 970 CG6686-PA 1..970 1..964 4941 99.4 Plus
CG6686-PC 109 CG6686-PC 1..84 1..84 445 100 Plus
CG2839-PA 826 CG2839-PA 377..744 8..409 343 26.6 Plus
CG2839-PA 826 CG2839-PA 313..816 8..515 329 24.1 Plus
CG2839-PA 826 CG2839-PA 263..794 70..599 311 23.5 Plus
CG2839-PA 826 CG2839-PA 289..745 4..491 308 23 Plus
CG7971-PG 1062 CG7971-PG 249..625 8..428 306 25.3 Plus
CG2839-PA 826 CG2839-PA 255..755 120..667 267 22.2 Plus