Clone Sequence Records
BS16713.complete Sequence
2201 bp assembled on 2009-12-07
GenBank Submission: KX803761
> BS16713.complete
GAAGTTATCAGTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATT
GCTACAACGGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTC
TCCGTGGACTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCT
GGCCTCGCTATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAAT
TGCGCCACACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGC
TTTGGTCAGCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACAT
CGTTATCCGCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGG
TAGCCATGAGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGAC
TACGGATCCTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCA
GAAGGTAACCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCG
ATGAGGAACTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCC
TCTGCTTTGGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGC
CGGTCCTCTCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACA
ATTTGCTTAGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGA
GAAGTAGTACTGGAACCTTCGCCTACTAAAGCGGTAATACGTAAAGTAGT
TGGTAGTCTTGTGTGCGCTTTCATCTTCATGAAGTTCGTGAAAATATATC
CCGTGAAAGACATGAAGGAGGATGACTTTATGAACAATACCAGCATGGTT
TACAAGTACTGGTACGCCATGATGGCTACCACCTGCATACGCTTTAAGTA
TTATCACGCCTGGCTCCTAGCGGATGCCATATGCAACAACTCAGGTCTAG
GTTTCACCGGCTACGATAAGGATGGCAATTCCAAGTGGGACCTGATATCT
AACATCAATGTGCTGTCGTTCGAGTTTTCAACGAACATGCGCGATGCCAT
CAACAACTGGAACTGCGGCACCAACCGCTGGCTGCGAACGCTTGTCTATG
AACGAGTGCCCCAGCAGTACGGCACGCTCCTTACCTTCGCCCTCAGCGCC
GTCTGGCACGGCTTTTATCCGGGCTACTACCTGACCTTCGCCACCGGCGC
TGTCGTTGTAACGGCTGCGCGCACCGGCCGGCGACTCTTCCGTCATCGCT
TCCAGAGCACGCAGGTCACGCGAATGTTCTACGACATCCTCACCTGCCTG
ATCACACGCGTCGTACTGGGCTACGCCACATTCCCATTCGTTCTGCTTGA
ATTTATGGGCAGCATCAAATTGTACCTGAGATTTTATTTGTGCCTTCACA
TCATTTCACTAGTGACCATATTTATTTTACCCAAGTTTATACGCGGCGAA
CGCCGGCTTCGGACGTCGAATGGCAACGGAAACGTGCGCTTGTCGGGCAG
CGGCAATACCAAGGATGCAGTGACCACTAGTGTGGAGTCTACGGCAGCCC
TAACCGCTGGCAATGATCTCAACGAGGATAAAGAGGAGGATAAACACGCT
CAATGTAAAGTCCACACGCCCACACAACAGCAGCCAGCTGCTGGCCCACA
CAAAACAACCGTAGAACAACCAACCGAGCAACCAAACAATGTAAATCTTC
GATCACGCCCACAGCAGCAGCAGCCACATCTCGAAAAGAAGGCAATGCCG
CCCACATGCGCCCGGGACGCGGTTAGTGTTCCTCATGACCAATGCGAGAT
GGATCAGTTGTCCAGCAAGCTTAAGGAGAAGATCGAGGCGGAGACCAAAA
ACATAGAGGAGTTTATTGATAAGACTGTTACCGAAACCGTGAGCGGCATT
GTAGAGTTCAAGAACGACCTGATGCGGGACATCGAGTTCCCCAAGTTAAA
GCTACCCGGCAGCAACGGGGCAATTTCTTTGGACTCTTCAAATGGCGGTG
GGCTGCGCAAGCGCAACATATCCTCTGTCCATGACAATGGCACAGATCCT
GGCCATGCTACCGCTGACCTCCATCCTCCTCTCGAGGAGAATGGCGCCGC
CTTTCTAAAGAAGGAGATCGAGGTAATCAACGCGGTGGTGCAACAAGCAG
TGCCGGCAGTGCTTAGCAACGGTCATGCAAAATAGAAGCTTTCTAGACCA
T
BS16713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 2169 | CG18445-PE | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| oys-RB | 2169 | CG18445-PB | 1..2169 | 17..2185 | 10845 | 100 | Plus |
| oys-RA | 2169 | CG18445-PA | 1..2169 | 17..2185 | 10845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..2446 | 17..2189 | 10850 | 100 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..2446 | 17..2189 | 10850 | 100 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..2446 | 17..2189 | 10850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10036940..10037772 | 2189..1357 | 4150 | 99.9 | Minus |
| 2R | 25286936 | 2R | 10038581..10038928 | 1024..677 | 1740 | 100 | Minus |
| 2R | 25286936 | 2R | 10038179..10038514 | 1358..1023 | 1680 | 100 | Minus |
| 2R | 25286936 | 2R | 10039626..10039850 | 336..112 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 677..504 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 506..335 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:05:39 has no hits.
BS16713.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:45:32 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-RA | 273..2434 | 17..2178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:05:45 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 274..2435 | 17..2178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:56:14 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-RA | 273..2434 | 17..2178 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:03:51 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 274..2435 | 17..2178 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:03:51 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10036951..10037771 | 1358..2178 | 100 | <- | Minus |
| 2R | 10038180..10038512 | 1025..1357 | 100 | <- | Minus |
| 2R | 10038581..10038928 | 677..1024 | 100 | <- | Minus |
| 2R | 10039173..10039343 | 506..676 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 337..505 | 100 | <- | Minus |
| 2R | 10039626..10039849 | 113..336 | 100 | <- | Minus |
| 2R | 10048251..10048346 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:05:45 Download gff for
BS16713.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5925685..5926017 | 1025..1357 | 100 | <- | Minus |
| arm_2R | 5924456..5925276 | 1358..2178 | 100 | <- | Minus |
| arm_2R | 5926086..5926433 | 677..1024 | 100 | <- | Minus |
| arm_2R | 5926678..5926848 | 506..676 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 337..505 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 113..336 | 100 | <- | Minus |
| arm_2R | 5935756..5935851 | 17..112 | 100 | | Minus |
BS16713.3prime Sequence
850 bp (830 high quality bases) assembled on 2007-05-15
> BS16713.3prime
ATGGTCTAGAAAGCTTCTATTTTGCATGACCGTTGCTAAGCACTGCCGGC
ACTGCTTGTTGCACCACCGCGTTGATTACCTCGATCTCCTTCTTTAGAAA
GGCGGCGCCATTCTCCTCGAGAGGAGGATGGAGGTCAGCGGTAGCATGGC
CAGGATCTGTGCCATTGTCATGGACAGAGGATATGTTGCGCTTGCGCAGC
CCACCGCCATTTGAAGAGTCCAAAGAAATTGCCCCGTTGCTGCCGGGTAG
CTTTAACTTGGGGAACTCGATGTCCCGCATCAGGTCGTTCTTGAACTCTA
CAATGCCGCTCACGGTTTCGGTAACAGTCTTATCAATAAACTCCTCTATG
TTTTTGGTCTCCGCCTCGATCTTCTCCTTAAGCTTGCTGGACAACTGATC
CATCTCGCATTGGTCATGAGGAACACTAACCGCGTCCCGGGCGCATGTGG
GCGGCATTGCCTTCTTTTCGAGATGTGGCTGCTGCTGCTGTGGGCGTGAT
CGAAGATTTACATTGTTTGGTTGCTCGGTTGGTTGTTCTACGGTTGTTTT
GTGTGGGCCAGCAGCTGGCTGCTGTTGTGTGGGCGTGTGGACTTTACATT
GAGCGTGTTTATCCTCCTCTTTATCCTCGTTGAGATCATTGCCAGCGGTT
AGGGCTGCCGTAGACTCCACACTAGTGGTCACTGCATCCTTGGTATTGCC
GCTGCCCGACAAGCGCACGTTTCCGTTGCCATTCGACGTCCGAAGCCGGC
GTTCGCCGCGTATAAACTTGGGTAAAATAAATATGGTCACTAGTGAAATG
ATGTGAAGGCACAAATAAAATCTCAGGTACAATTTGATGCTGCCCATAAA
BS16713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18445-PA | 2169 | CG18445-RA | 1336..2169 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 1609..2446 | 850..13 | 4175 | 99.9 | Minus |
| oys-RD | 3556 | CG18445-RD | 1315..2152 | 850..13 | 4175 | 99.9 | Minus |
| oys-RB | 3850 | CG18445-RB | 1609..2446 | 850..13 | 4175 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10036940..10037772 | 13..845 | 4150 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:00:02 has no hits.
BS16713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:12:50 Download gff for
BS16713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-PA | 1339..2169 | 17..847 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:52 Download gff for
BS16713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 1612..2449 | 10..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:01 Download gff for
BS16713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RB | 1612..2449 | 10..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:01 Download gff for
BS16713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10036937..10037773 | 10..847 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:52 Download gff for
BS16713.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5924442..5925278 | 10..847 | 99 | | Plus |
BS16713.5prime Sequence
850 bp (806 high quality bases) assembled on 2007-05-15
> BS16713.5prime
GAAGTTATCAGTCGACATGCTAGAACCGCCGAAATTTATAGAGAATGATT
GCTACAACGGCAGCCGGACCTTCACTTGGCTGGCGGATATGGTGGGCCTC
TCCGTGGACTTGGTAAACTTTTTGATTTGCCAAATATCTGCTCTCTTCCT
GGCCTCGCTATTTCGGTCGATGCTGCATCCTTCGAAGGTTTCCAGCAAAT
TGCGCCACACATTCGCCCTATCGATTGGCCTGGCCTTCGGCTACTTTTGC
TTTGGTCAGCAGGCAATCCACATTGCCGGATTGCCGGCAATATGTTACAT
CGTTATCCGCACCCAAGATCCACGTATTGTCCAAAGAGCCGTCCTGCTGG
TAGCCATGAGTTATCTGCTGTGCGTACATTTGATGCGCCAGCTTTACGAC
TACGGATCCTACGCCCTGGACATAACCGGGCCCCTTATGATCATCACTCA
GAAGGTAACCAGCCTGGCGTTCAGCATTCACGATGGGTTTGTGCGGGGCG
ATGAGGAACTCACCAAAGCGCAACAGTACCACGCCATCCGCAAAATGCCC
TCTGCTTTGGAGTACTTCTCCTACGTGTGGCACTTCCAAAGCATCCTAGC
CGGTCCTCTCGTTTTCTACAAGGATTATATCGAGTTTGTCGAAGGCTACA
ATTTGCTTAGTACTCCACCGGGCAATGGAAATCTCGACAGCAGCAAGAGA
GAAGTAGTACTGGAACCTTCGCCTACTAAAGCGGTAATACGTAAAGTAGT
TGGTAGTCTTGTGTGCGCTTTCATCTTCATGAAGTTCGTGAAAATATATC
CCCGTGAAGACATGAANGAGGATGACTTTATGAAACATACCAGCATGGTT
BS16713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18445-PA | 2169 | CG18445-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
| CG18445-PA | 2169 | CG18445-RA | 791..834 | 807..850 | 151 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-RE | 4791 | CG18445-RE | 274..1107 | 17..850 | 4084 | 99.4 | Plus |
| oys-RB | 3850 | CG18445-RB | 274..1107 | 17..850 | 4084 | 99.4 | Plus |
| oys-RA | 3613 | CG18445-RA | 274..1107 | 17..850 | 4084 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10039626..10039850 | 336..112 | 1125 | 100 | Minus |
| 2R | 25286936 | 2R | 10039172..10039345 | 677..504 | 870 | 100 | Minus |
| 2R | 25286936 | 2R | 10039403..10039574 | 506..335 | 860 | 100 | Minus |
| 2R | 25286936 | 2R | 10038755..10038928 | 850..677 | 769 | 96 | Minus |
| 2R | 25286936 | 2R | 10048249..10048346 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:05:20 has no hits.
BS16713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:03 Download gff for
BS16713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18445-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:02 Download gff for
BS16713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1107 | 9..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:36:03 Download gff for
BS16713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| oys-RA | 267..1107 | 9..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:36:03 Download gff for
BS16713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10048251..10048353 | 9..112 | 97 | | Minus |
| 2R | 10038755..10038928 | 677..850 | 97 | <- | Minus |
| 2R | 10039173..10039343 | 506..676 | 100 | <- | Minus |
| 2R | 10039404..10039572 | 337..505 | 100 | <- | Minus |
| 2R | 10039626..10039849 | 113..336 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:02 Download gff for
BS16713.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5926260..5926433 | 677..850 | 97 | <- | Minus |
| arm_2R | 5926678..5926848 | 506..676 | 100 | <- | Minus |
| arm_2R | 5926909..5927077 | 337..505 | 100 | <- | Minus |
| arm_2R | 5927131..5927354 | 113..336 | 100 | <- | Minus |
| arm_2R | 5935756..5935858 | 9..112 | 97 | | Minus |
BS16713.pep Sequence
Translation from 16 to 2184
> BS16713.pep
MLEPPKFIENDCYNGSRTFTWLADMVGLSVDLVNFLICQISALFLASLFR
SMLHPSKVSSKLRHTFALSIGLAFGYFCFGQQAIHIAGLPAICYIVIRTQ
DPRIVQRAVLLVAMSYLLCVHLMRQLYDYGSYALDITGPLMIITQKVTSL
AFSIHDGFVRGDEELTKAQQYHAIRKMPSALEYFSYVWHFQSILAGPLVF
YKDYIEFVEGYNLLSTPPGNGNLDSSKREVVLEPSPTKAVIRKVVGSLVC
AFIFMKFVKIYPVKDMKEDDFMNNTSMVYKYWYAMMATTCIRFKYYHAWL
LADAICNNSGLGFTGYDKDGNSKWDLISNINVLSFEFSTNMRDAINNWNC
GTNRWLRTLVYERVPQQYGTLLTFALSAVWHGFYPGYYLTFATGAVVVTA
ARTGRRLFRHRFQSTQVTRMFYDILTCLITRVVLGYATFPFVLLEFMGSI
KLYLRFYLCLHIISLVTIFILPKFIRGERRLRTSNGNGNVRLSGSGNTKD
AVTTSVESTAALTAGNDLNEDKEEDKHAQCKVHTPTQQQPAAGPHKTTVE
QPTEQPNNVNLRSRPQQQQPHLEKKAMPPTCARDAVSVPHDQCEMDQLSS
KLKEKIEAETKNIEEFIDKTVTETVSGIVEFKNDLMRDIEFPKLKLPGSN
GAISLDSSNGGGLRKRNISSVHDNGTDPGHATADLHPPLEENGAAFLKKE
IEVINAVVQQAVPAVLSNGHAK*
BS16713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 07:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| oys-PE | 722 | CG18445-PE | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PB | 722 | CG18445-PB | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PA | 722 | CG18445-PA | 1..722 | 1..722 | 3786 | 100 | Plus |
| oys-PD | 702 | CG18445-PD | 9..702 | 29..722 | 3623 | 99.9 | Plus |
| nes-PC | 497 | CG9655-PC | 17..438 | 22..453 | 309 | 24.2 | Plus |
