Clone Sequence Records
BS16715.3prime Sequence
237 bp (237 high quality bases) assembled on 2007-05-15
> BS16715.3prime
ATGGTCTAGAAAGCTTCTAGGCGTTGATATAGTACTCCCGCTTCTTCTGG
CACTTCTCGTACGCAATGTAGCACAGTGCGATGGTGATGAGGACCAGTAT
GGTGATGCCCATTATGATGCTGACCAGTATAATCTCATCGTTGATGCTCT
TGTACGAGTGACCACTGTAATAATTGTTGTCCGAATATCCGTATTTGCCG
GCTGTCCTGCCCCCGCCGGCCATGTCGACTGATAACT
BS16715.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-PA | 207 | CG17193-RA | 1..207 | 223..17 | 1035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:04:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-RC | 3568 | CG17193-RC | 193..400 | 223..16 | 1040 | 100 | Minus |
| CG17193-RB | 3915 | CG17193-RB | 540..747 | 223..16 | 1040 | 100 | Minus |
| CG17193-RA | 3918 | CG17193-RA | 543..750 | 223..16 | 1040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20039589..20039736 | 16..163 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 20049647..20049709 | 161..223 | 315 | 100 | Plus |
| X | 23542271 | X | 17422885..17422989 | 43..147 | 240 | 81.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:04:26 has no hits.
BS16715.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:04 Download gff for
BS16715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-PA | 1..207 | 17..223 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:47 Download gff for
BS16715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 539..750 | 11..223 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:23:16 Download gff for
BS16715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 543..754 | 11..223 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:23:16 Download gff for
BS16715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20039585..20039737 | 11..168 | 96 | -> | Plus |
| 3R | 20049654..20049709 | 169..223 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:47 Download gff for
BS16715.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15865307..15865459 | 11..168 | 96 | -> | Plus |
| arm_3R | 15875376..15875431 | 169..223 | 98 | | Plus |
BS16715.5prime Sequence
237 bp (237 high quality bases) assembled on 2007-05-15
> BS16715.5prime
GAAGTTATCAGTCGACATGGCCGGCGGGGGCAGGACAGCCGGCAAATACG
GATATTCGGACAACAATTATTACAGTGGTCACTCGTACAAGAGCATCAAC
GATGAGATTATACTGGTCAGCATCATAATGGGCATCACCATACTGGTCCT
CATCACCATCGCACTGTGCTACATTGCGTACGAGAAGTGCCAGAAGAAGC
GGGAGTACTATATCAACGCCTAGAAGCTTTCTAGACC
BS16715.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-PA | 207 | CG17193-RA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-RC | 3568 | CG17193-RC | 193..400 | 17..224 | 1040 | 100 | Plus |
| CG17193-RB | 3915 | CG17193-RB | 540..747 | 17..224 | 1040 | 100 | Plus |
| CG17193-RA | 3918 | CG17193-RA | 543..750 | 17..224 | 1040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20039589..20039736 | 224..77 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 20049647..20049709 | 79..17 | 315 | 100 | Minus |
| X | 23542271 | X | 17422885..17422989 | 197..93 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:51 has no hits.
BS16715.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:17 Download gff for
BS16715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-PA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:22 Download gff for
BS16715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 539..750 | 17..229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:33 Download gff for
BS16715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 543..754 | 17..229 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:26:33 Download gff for
BS16715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20039585..20039737 | 72..229 | 96 | -> | Minus |
| 3R | 20049654..20049709 | 17..71 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:22 Download gff for
BS16715.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15865307..15865459 | 72..229 | 96 | -> | Minus |
| arm_3R | 15875376..15875431 | 17..71 | 98 | | Minus |
BS16715.complete Sequence
239 bp assembled on 2007-05-07
GenBank Submission: FJ638183
> BS16715.complete
GAAGTTATCAGTCGACATGGCCGGCGGGGGCAGGACAGCCGGCAAATACG
GATATTCGGACAACAATTATTACAGTGGTCACTCGTACAAGAGCATCAAC
GATGAGATTATACTGGTCAGCATCATAATGGGCATCACCATACTGGTCCT
CATCACCATCGCACTGTGCTACATTGCGTACGAGAAGTGCCAGAAGAAGC
GGGAGTACTATATCAACGCCTAGAAGCTTTCTAGACCAT
BS16715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:09:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-RC | 207 | CG17193-PC | 1..207 | 17..223 | 1035 | 100 | Plus |
| CG17193-RB | 207 | CG17193-PB | 1..207 | 17..223 | 1035 | 100 | Plus |
| CG17193-RA | 207 | CG17193-PA | 1..207 | 17..223 | 1035 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-RC | 3568 | CG17193-RC | 193..400 | 17..224 | 1040 | 100 | Plus |
| CG17193-RB | 3915 | CG17193-RB | 540..747 | 17..224 | 1040 | 100 | Plus |
| CG17193-RA | 3918 | CG17193-RA | 543..750 | 17..224 | 1040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:09:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20039589..20039736 | 224..77 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 20049647..20049709 | 79..17 | 315 | 100 | Minus |
| X | 23542271 | X | 17422885..17422989 | 197..93 | 240 | 81.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:09:30 has no hits.
BS16715.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:09 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 1..207 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:56 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 539..745 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:13:00 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 539..745 | 17..223 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:09 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 539..750 | 17..229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:12:09 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17193-RA | 543..749 | 17..223 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:12:09 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20039590..20039737 | 72..223 | 97 | -> | Minus |
| 3R | 20049654..20049709 | 17..71 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:13:00 Download gff for
BS16715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15875376..15875431 | 17..71 | 98 | | Minus |
| arm_3R | 15865312..15865459 | 72..223 | 97 | -> | Minus |
BS16715.pep Sequence
Translation from 16 to 222
> BS16715.pep
MAGGGRTAGKYGYSDNNYYSGHSYKSINDEIILVSIIMGITILVLITIAL
CYIAYEKCQKKREYYINA*
BS16715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17193-PC | 68 | CG17193-PC | 1..68 | 1..68 | 355 | 100 | Plus |
| CG17193-PB | 68 | CG17193-PB | 1..68 | 1..68 | 355 | 100 | Plus |
| CG17193-PA | 68 | CG17193-PA | 1..68 | 1..68 | 355 | 100 | Plus |
| CG12994-PA | 67 | CG12994-PA | 4..67 | 5..68 | 216 | 69.2 | Plus |
