Clone Sequence Records
BS16725.complete Sequence
2255 bp assembled on 2009-12-08
GenBank Submission: KX803378
> BS16725.complete
GAAGTTATCAGTCGACATGGCCCAGCAACAGCGCAGCTGGGACGAGGGAG
CTGTCGGTGGAGGATCCTATGGCCATCCCCACTCCTCGCACCACAAAGTA
CCTGCTCGCGCTGCCAGCAATCCGCTGCCCTGCAAAGGAGCCACTCCCAA
GCTGCCCAGGCAATACCATGGAGGTCCGACGTCGAGCTATAACTATGGAG
GATATGATACCCCGAGGAGTCCCAAGATCACCACCACCTTTGCCCAAGAC
AGTTGTGATGATGTCAGTAGCTCCACGCCCAGCTCCTATTATCAGACGCC
CCCATCGGGATCGATAGATGATTCGGCATCTCTGCTCAGTGGACGCACCA
CTGCCCGCAGTCCCAAGTCGCAGTGCCAGTTCGTCTTTGATGCAGTGAGT
CCCAGTCACGGAAGGAAGTTCGAGTACTACGAACCGATCTCGCCAGACGA
TGGAGCTCTCTACTATGATCCACCCAGTTCGCCACGTCGGCAGGGTTCCA
AAAAGTTAATGAGAACAAAGACCCCACTGGATCCCGTTCCCCAATTGACT
ACGACAGGCGTGGATGAGAGCATGGCGGTGGCTATGGCCATGGGCGGAGC
AGGAGGTGGAGGTTACGCCCAAGGAGGACCAAACAAGCGGCAGAGAGATG
AGTGGGAACTACCGGTGATCAGCAAGATCGAGGCGAGAAACCTAAGTGCG
GCTGCAGGATCAAGCTCGGCTGGAGGAAGTTATTATGGCTTGAAGCGCGA
CTCCTGCGTCACAGACTGCACGCAGCTGTCTATGGAATCCGGCGAGACGG
GTACCCAGCATACCAATAGCACCATGGTGACCCACACCACCACCAGCTTT
AGCTTTACGGAGCCGGAAATGGAGCAAGAGGCTGGACAGCCGCAATTACG
GCGCCAACGTCGCCATGCCATCAACATCACCTCCAATCCCGGCTACCAGG
TGCTCCACAGCTCCCACTCCACGCTGGATCGTACCTGTTCCGATAGCGTG
GTCTCACTTCGCTACCGCAAATCCACCAGTGACCTGACCCAAGATGCTGA
ACACGAGCTAAGTGGCTGCAAGCCCAACAAGCCGAAGGCCCATGTGGAGC
ATAAACCGCGACGCCGGGGCAGCTCCAAAGGTGGACTGGCCTACTTGGCC
AGCCGGCGAAGTTCCCGTGAGTCGATGAAGAGCGCCTGCTCCAATGCCTC
CATCGTTTCCAACGACGATGTTGGACCACTGGCCTTCCAGAGTTCGAATC
GCGGTCGCCAGCGTAGAACATCGAACTTTCTCGAGTTGCCAGTTCCCGAC
CATGTGCGTCCGCGAGTCTGTTCCCTTCCAGAGCGACCGTACAATCCGCG
TGCCAGTGATGACCTGTACCGCCTGCGTCACTTCTCCATCAGCAAGGGCA
ACGTGGTTAACTGTGGCGACTCGATAATCTCGCGGAGATCGCGAAGCAAC
ACCAGCGTCAACTCGACAAACAGCCGGGCCAGCGAACGTTCCCCATTCGA
GGGCAGCTGTTGCGGAGCGGGCTATGCCAATGTGGATTCGCTGCCGGCAA
CACCGGATGACTCGGAGAATTTGGATCCACCTCCGCCCGCCCGCTACCGC
GTCGTGATGCTGGGCGATGCCGGCGTGGGCAAGACGGCGCTGGTCAATCA
GTTCATGACGTCGGAGTACATGCACACCTATGACGCCAGCCTGGACGACG
AGTTCGGCGAGAAGACGGTGAGCGTGCTGCTGGACGATGAGGAGTCGGAC
ATGGTCTTCATCGACCATCCAAGCGTTGAGATGAGCGTGGAGAACTCCCT
ATCCACATATGAGCCACATGGCTGCGTCGTGGTCTTCTCGGTGGTGGATC
GCAGCTCCTTCCGCGTGGCCGAGGAAATCATAAATTACCTGTGGCAGGAG
AACTACACCAAGGACAAGGCTGTCATACTGGTGGGCAACAAGGCGGATCT
GGCCCGCGCCCGGCTTATCACATCACAGGAGGGCAAAGCGCTGGCCGCCT
CACGCGATGCCAAATTTATTGAGACGTCTAGCGGCATACAGCACAACGTC
GATGAGCTGCTCGTCGGCATATTGAAGCAGATGCGGCTGAAAGAGAAGCG
GGAGAAAAAGGCCACCGCCTCGAAGATGAAGACTTCCCGCACCCACATAT
CGCTGCACTTGGCCAAGGAACTGCTGCAGAAGATCTGCCTCAGCGACATC
TCCAAGTCGAAGAGCTGCGAGAATCTGCATGTGCTATAAAAGCTTTCTAG
ACCAT
BS16725.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rgk2-RA | 2223 | CG34390-PA | 1..2223 | 17..2239 | 11100 | 100 | Plus |
Rgk2-RC | 2229 | CG34390-PC | 1..2229 | 17..2239 | 11005 | 99.7 | Plus |
Rgk1-RB | 4140 | CG44011-PB | 3360..3480 | 1594..1714 | 215 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rgk2-RA | 4903 | CG34390-RA | 720..2943 | 17..2240 | 11105 | 100 | Plus |
Rgk2-RC | 4522 | CG34390-RC | 333..2562 | 17..2240 | 11010 | 99.7 | Plus |
Rgk1-RB | 5443 | CG44011-RB | 4459..4579 | 1594..1714 | 215 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18544117..18545252 | 157..1292 | 5665 | 99.9 | Plus |
2R | 25286936 | 2R | 18545320..18545724 | 1290..1694 | 2025 | 100 | Plus |
2R | 25286936 | 2R | 18545896..18546181 | 1694..1979 | 1430 | 100 | Plus |
2R | 25286936 | 2R | 18546847..18547009 | 2078..2240 | 815 | 100 | Plus |
2R | 25286936 | 2R | 18543921..18544064 | 17..160 | 720 | 100 | Plus |
2R | 25286936 | 2R | 18546256..18546357 | 1979..2080 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:48:01 has no hits.
BS16725.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:27 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 720..2940 | 17..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:06 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 720..2940 | 17..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:18 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 720..2940 | 17..2237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:04 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 720..2940 | 17..2237 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:04 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18543921..18544063 | 17..159 | 100 | -> | Plus |
2R | 18544120..18545252 | 160..1292 | 99 | -> | Plus |
2R | 18545323..18545724 | 1293..1694 | 100 | -> | Plus |
2R | 18545897..18546181 | 1695..1979 | 100 | -> | Plus |
2R | 18546257..18546357 | 1980..2080 | 100 | -> | Plus |
2R | 18546850..18547006 | 2081..2237 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:06 Download gff for
BS16725.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14431426..14431568 | 17..159 | 100 | -> | Plus |
arm_2R | 14431625..14432757 | 160..1292 | 99 | -> | Plus |
arm_2R | 14432828..14433229 | 1293..1694 | 100 | -> | Plus |
arm_2R | 14433402..14433686 | 1695..1979 | 100 | -> | Plus |
arm_2R | 14433762..14433862 | 1980..2080 | 100 | -> | Plus |
arm_2R | 14434355..14434511 | 2081..2237 | 100 | | Plus |
BS16725.3prime Sequence
866 bp (835 high quality bases) assembled on 2007-05-15
> BS16725.3prime
ATGGTCTAGAAAGCTTTTATAGCACATGCAGATTCTCGCAGCTCTTCGAC
TTGGAGATGTCGCTGAGGCAGATCTTCTGCAGCAGTTCCTTGGCCAAGTG
CAGCGATATGTGGGTGCGGGAAGTCTTCATCTTCGAGGCGGTGGCCTTTT
TCTCCCGCTTCTCTTTCAGCCGCATCTGCTTCAATATGCCGACGAGCAGC
TCATCGACGTTGTGCTGTATGCCGCTAGACGTCTCAATAAATTTGGCATC
GCGTGAGGCGGCCAGCGCTTTGCCCTCCTGTGATGTGATAAGCCGGGCGC
GGGCCAGATCCGCCTTGTTGCCCACCAGTATGACAGCCTTGTCCTTGGTG
TAGTTCTCCTGCCACAGGTAATTTATGATTTCCTCGGCCACGCGGAAGGA
GCTGCGATCCACCACCGAGAAGACCACGACGCAGCCATGTGGCTCATATG
TGGATAGGGAGTTCTCCACGCTCATCTCAACGCTTGGATGGTCGATGAAG
ACCATGTCCGACTCCTCATCGTCCAGCAGCACGCTCACCGTCTTCTCGCC
GAACTCGTCGTCCAGGCTGGCGTCATAGGTGTGCATGTACTCCGACGTCA
TGAACTGATTGACCAGCGCCGTCTTGCCCACGCCGGCATCGCCCAGCATC
ACGACGCGGTAGCGGGCGGGCGGAGGTGGATCCAAATTCTCCGAGTCATC
CGGTGTTGCCGGCAGCGAATCCACATTGGCATAGCCCGCTCCGCAACAGC
TGCCCTCGAATGGGGAACGTTCGCTGGCCCGGCTGTTTGTCGAGTTGACG
CTGGTGTTGCTTCGCGATCTCCGCGAGATTATCGAGTCGCCACAGTTAAC
CACGTTGCCCTTGCTG
BS16725.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15069-PA | 2223 | Rgk2-RA | 1374..2223 | 866..17 | 4250 | 100 | Minus |
CG15069-PB | 633 | Rgk2-RB | 1..633 | 649..17 | 3165 | 100 | Minus |
CG9811-PA | 1614 | Rgk1-RA | 1575..1607 | 56..24 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rgk2-RA | 4903 | CG34390-RA | 2093..2943 | 866..16 | 4255 | 100 | Minus |
Rgk2-RC | 4522 | CG34390-RC | 1706..2562 | 866..16 | 4185 | 99.3 | Minus |
Rgk1-RB | 5443 | CG44011-RB | 4459..4579 | 662..542 | 215 | 79.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:00:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18545420..18545724 | 866..562 | 1525 | 100 | Minus |
2R | 25286936 | 2R | 18545896..18546181 | 562..277 | 1430 | 100 | Minus |
2R | 25286936 | 2R | 18546847..18547009 | 178..16 | 815 | 100 | Minus |
2R | 25286936 | 2R | 18546256..18546357 | 277..176 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:00:48 has no hits.
BS16725.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:13 Download gff for
BS16725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15069-PA | 1374..2223 | 17..866 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:01 Download gff for
BS16725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 2093..2949 | 9..866 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:07 Download gff for
BS16725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 2093..2949 | 9..866 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:07 Download gff for
BS16725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18545420..18545724 | 562..866 | 100 | -> | Minus |
2R | 18545897..18546181 | 277..561 | 100 | -> | Minus |
2R | 18546257..18546357 | 176..276 | 100 | -> | Minus |
2R | 18546850..18547015 | 9..175 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:01 Download gff for
BS16725.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14432925..14433229 | 562..866 | 100 | -> | Minus |
arm_2R | 14433402..14433686 | 277..561 | 100 | -> | Minus |
arm_2R | 14433762..14433862 | 176..276 | 100 | -> | Minus |
arm_2R | 14434355..14434520 | 9..175 | 98 | | Minus |
BS16725.5prime Sequence
903 bp (783 high quality bases) assembled on 2007-05-15
> BS16725.5prime
GAAGTTATCAGTCGACATGGCCCAGCAACAGCGCAGCTGGGACGAGGGAG
CTGTCGGTGGAGGATCCTATGGCCATCCCCACTCCTCGCACCACAAAGTA
CCTGCTCGCGCTGCCAGCAATCCGCTGCCCTGCAAAGGAGCCACTCCCAA
GCTGCCCAGGCAATACCATGGAGGTCCGACGTCGAGCTATAACTATGGAG
GATATGATACCCCGAGGAGTCCCAAGATCACCACCACCTTTGCCCAAGAC
AGTTGTGATGATGTCAGTAGCTCCACGCCCAGCTCCTATTATCAGACGCC
CCCATCGGGATCGATAGATGATTCGGCATCTCTGCTCAGTGGACGCACCA
CTGCCCGCAGTCCCAAGTCGCAGTGCCAGTTCGTCTTTGATGCAGTGAGT
CCCAGTCACGGAAGGAAGTTCGAGTACTACGAACCGATCTCGCCAGACGA
TGGAGCTCTCTACTATGATCCACCCAGTTCGCCACGTCGGCAGGGTTCCA
AAAAGTTAATGAGAACAAAGACCCCACTGGATCCCGTTCCCCAATTGACT
ACGACAGGCGTGGATGAGAGCATGGCGGTGGCTATGGCCATGGGCGGAGC
AGGAGGTGGAGGTTACGCCCAAGGAGGACCAAACAAGCGGCAGAGAGATG
AGTGGGAACTACCGGTGATCAGCAAGATCGAGGCGAGAAACCTAAGTGCG
GCTGCAGGATCAAGCTCGGCTGGAGGAAGTTATTATGGCTTGAAGCGCGA
CTCCTGCGTCACAGACTGCACGCAGCTGTCTATGGAATCCGGCGAGACGG
GTACCCAGCATACCAATAGCACCATGGTGACCCACACCACCACCAGCTTT
AGCTTTACNGAGCCGGAAATGGAGCAAGAGGCTGGACAGCCCGCATTACG
GCG
BS16725.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15069-PA | 2223 | Rgk2-RA | 1..875 | 17..891 | 4331 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rgk2-RC | 4522 | CG34390-RC | 333..1219 | 17..903 | 4364 | 99.5 | Plus |
Rgk2-RA | 4903 | CG34390-RA | 720..1606 | 17..903 | 4364 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18544117..18544863 | 157..903 | 3664 | 99.3 | Plus |
2R | 25286936 | 2R | 18543921..18544064 | 17..160 | 720 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:10:12 has no hits.
BS16725.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:27 Download gff for
BS16725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15069-PA | 1..887 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:32 Download gff for
BS16725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 713..1606 | 8..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:21 Download gff for
BS16725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rgk2-RA | 713..1606 | 8..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:21 Download gff for
BS16725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18543909..18544063 | 3..159 | 96 | -> | Plus |
2R | 18544120..18544863 | 160..903 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:32 Download gff for
BS16725.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14431414..14431568 | 3..159 | 96 | -> | Plus |
arm_2R | 14431625..14432368 | 160..903 | 99 | | Plus |
BS16725.pep Sequence
Translation from 16 to 2238
> BS16725.pep
MAQQQRSWDEGAVGGGSYGHPHSSHHKVPARAASNPLPCKGATPKLPRQY
HGGPTSSYNYGGYDTPRSPKITTTFAQDSCDDVSSSTPSSYYQTPPSGSI
DDSASLLSGRTTARSPKSQCQFVFDAVSPSHGRKFEYYEPISPDDGALYY
DPPSSPRRQGSKKLMRTKTPLDPVPQLTTTGVDESMAVAMAMGGAGGGGY
AQGGPNKRQRDEWELPVISKIEARNLSAAAGSSSAGGSYYGLKRDSCVTD
CTQLSMESGETGTQHTNSTMVTHTTTSFSFTEPEMEQEAGQPQLRRQRRH
AINITSNPGYQVLHSSHSTLDRTCSDSVVSLRYRKSTSDLTQDAEHELSG
CKPNKPKAHVEHKPRRRGSSKGGLAYLASRRSSRESMKSACSNASIVSND
DVGPLAFQSSNRGRQRRTSNFLELPVPDHVRPRVCSLPERPYNPRASDDL
YRLRHFSISKGNVVNCGDSIISRRSRSNTSVNSTNSRASERSPFEGSCCG
AGYANVDSLPATPDDSENLDPPPPARYRVVMLGDAGVGKTALVNQFMTSE
YMHTYDASLDDEFGEKTVSVLLDDEESDMVFIDHPSVEMSVENSLSTYEP
HGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL
ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKAT
ASKMKTSRTHISLHLAKELLQKICLSDISKSKSCENLHVL*
BS16725.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rgk2-PA | 740 | CG34390-PA | 1..740 | 1..740 | 3862 | 100 | Plus |
Rgk2-PC | 742 | CG34390-PC | 1..742 | 1..740 | 3849 | 99.7 | Plus |
Rgk1-PA | 498 | CG44011-PA | 150..498 | 431..740 | 692 | 46.5 | Plus |
Rgk1-PB | 1379 | CG44011-PB | 1031..1379 | 431..740 | 692 | 46.5 | Plus |
Rgk1-PC | 514 | CG44011-PC | 150..514 | 431..740 | 665 | 44.5 | Plus |