Clone BS16725 Report

Search the DGRC for BS16725

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptRgk2-RA
Protein status:BS16725.pep: full length peptide match
Sequenced Size:2255

Clone Sequence Records

BS16725.complete Sequence

2255 bp assembled on 2009-12-08

GenBank Submission: KX803378

> BS16725.complete
GAAGTTATCAGTCGACATGGCCCAGCAACAGCGCAGCTGGGACGAGGGAG
CTGTCGGTGGAGGATCCTATGGCCATCCCCACTCCTCGCACCACAAAGTA
CCTGCTCGCGCTGCCAGCAATCCGCTGCCCTGCAAAGGAGCCACTCCCAA
GCTGCCCAGGCAATACCATGGAGGTCCGACGTCGAGCTATAACTATGGAG
GATATGATACCCCGAGGAGTCCCAAGATCACCACCACCTTTGCCCAAGAC
AGTTGTGATGATGTCAGTAGCTCCACGCCCAGCTCCTATTATCAGACGCC
CCCATCGGGATCGATAGATGATTCGGCATCTCTGCTCAGTGGACGCACCA
CTGCCCGCAGTCCCAAGTCGCAGTGCCAGTTCGTCTTTGATGCAGTGAGT
CCCAGTCACGGAAGGAAGTTCGAGTACTACGAACCGATCTCGCCAGACGA
TGGAGCTCTCTACTATGATCCACCCAGTTCGCCACGTCGGCAGGGTTCCA
AAAAGTTAATGAGAACAAAGACCCCACTGGATCCCGTTCCCCAATTGACT
ACGACAGGCGTGGATGAGAGCATGGCGGTGGCTATGGCCATGGGCGGAGC
AGGAGGTGGAGGTTACGCCCAAGGAGGACCAAACAAGCGGCAGAGAGATG
AGTGGGAACTACCGGTGATCAGCAAGATCGAGGCGAGAAACCTAAGTGCG
GCTGCAGGATCAAGCTCGGCTGGAGGAAGTTATTATGGCTTGAAGCGCGA
CTCCTGCGTCACAGACTGCACGCAGCTGTCTATGGAATCCGGCGAGACGG
GTACCCAGCATACCAATAGCACCATGGTGACCCACACCACCACCAGCTTT
AGCTTTACGGAGCCGGAAATGGAGCAAGAGGCTGGACAGCCGCAATTACG
GCGCCAACGTCGCCATGCCATCAACATCACCTCCAATCCCGGCTACCAGG
TGCTCCACAGCTCCCACTCCACGCTGGATCGTACCTGTTCCGATAGCGTG
GTCTCACTTCGCTACCGCAAATCCACCAGTGACCTGACCCAAGATGCTGA
ACACGAGCTAAGTGGCTGCAAGCCCAACAAGCCGAAGGCCCATGTGGAGC
ATAAACCGCGACGCCGGGGCAGCTCCAAAGGTGGACTGGCCTACTTGGCC
AGCCGGCGAAGTTCCCGTGAGTCGATGAAGAGCGCCTGCTCCAATGCCTC
CATCGTTTCCAACGACGATGTTGGACCACTGGCCTTCCAGAGTTCGAATC
GCGGTCGCCAGCGTAGAACATCGAACTTTCTCGAGTTGCCAGTTCCCGAC
CATGTGCGTCCGCGAGTCTGTTCCCTTCCAGAGCGACCGTACAATCCGCG
TGCCAGTGATGACCTGTACCGCCTGCGTCACTTCTCCATCAGCAAGGGCA
ACGTGGTTAACTGTGGCGACTCGATAATCTCGCGGAGATCGCGAAGCAAC
ACCAGCGTCAACTCGACAAACAGCCGGGCCAGCGAACGTTCCCCATTCGA
GGGCAGCTGTTGCGGAGCGGGCTATGCCAATGTGGATTCGCTGCCGGCAA
CACCGGATGACTCGGAGAATTTGGATCCACCTCCGCCCGCCCGCTACCGC
GTCGTGATGCTGGGCGATGCCGGCGTGGGCAAGACGGCGCTGGTCAATCA
GTTCATGACGTCGGAGTACATGCACACCTATGACGCCAGCCTGGACGACG
AGTTCGGCGAGAAGACGGTGAGCGTGCTGCTGGACGATGAGGAGTCGGAC
ATGGTCTTCATCGACCATCCAAGCGTTGAGATGAGCGTGGAGAACTCCCT
ATCCACATATGAGCCACATGGCTGCGTCGTGGTCTTCTCGGTGGTGGATC
GCAGCTCCTTCCGCGTGGCCGAGGAAATCATAAATTACCTGTGGCAGGAG
AACTACACCAAGGACAAGGCTGTCATACTGGTGGGCAACAAGGCGGATCT
GGCCCGCGCCCGGCTTATCACATCACAGGAGGGCAAAGCGCTGGCCGCCT
CACGCGATGCCAAATTTATTGAGACGTCTAGCGGCATACAGCACAACGTC
GATGAGCTGCTCGTCGGCATATTGAAGCAGATGCGGCTGAAAGAGAAGCG
GGAGAAAAAGGCCACCGCCTCGAAGATGAAGACTTCCCGCACCCACATAT
CGCTGCACTTGGCCAAGGAACTGCTGCAGAAGATCTGCCTCAGCGACATC
TCCAAGTCGAAGAGCTGCGAGAATCTGCATGTGCTATAAAAGCTTTCTAG
ACCAT

BS16725.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:48:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rgk2-RA 2223 CG34390-PA 1..2223 17..2239 11100 100 Plus
Rgk2-RC 2229 CG34390-PC 1..2229 17..2239 11005 99.7 Plus
Rgk1-RB 4140 CG44011-PB 3360..3480 1594..1714 215 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
Rgk2-RA 4903 CG34390-RA 720..2943 17..2240 11105 100 Plus
Rgk2-RC 4522 CG34390-RC 333..2562 17..2240 11010 99.7 Plus
Rgk1-RB 5443 CG44011-RB 4459..4579 1594..1714 215 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18544117..18545252 157..1292 5665 99.9 Plus
2R 25286936 2R 18545320..18545724 1290..1694 2025 100 Plus
2R 25286936 2R 18545896..18546181 1694..1979 1430 100 Plus
2R 25286936 2R 18546847..18547009 2078..2240 815 100 Plus
2R 25286936 2R 18543921..18544064 17..160 720 100 Plus
2R 25286936 2R 18546256..18546357 1979..2080 510 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:48:01 has no hits.

BS16725.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:41:27 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 720..2940 17..2237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:58:06 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 720..2940 17..2237 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:11:18 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 720..2940 17..2237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:57:04 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 720..2940 17..2237 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:57:04 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18543921..18544063 17..159 100 -> Plus
2R 18544120..18545252 160..1292 99 -> Plus
2R 18545323..18545724 1293..1694 100 -> Plus
2R 18545897..18546181 1695..1979 100 -> Plus
2R 18546257..18546357 1980..2080 100 -> Plus
2R 18546850..18547006 2081..2237 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:58:06 Download gff for BS16725.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14431426..14431568 17..159 100 -> Plus
arm_2R 14431625..14432757 160..1292 99 -> Plus
arm_2R 14432828..14433229 1293..1694 100 -> Plus
arm_2R 14433402..14433686 1695..1979 100 -> Plus
arm_2R 14433762..14433862 1980..2080 100 -> Plus
arm_2R 14434355..14434511 2081..2237 100   Plus

BS16725.3prime Sequence

866 bp (835 high quality bases) assembled on 2007-05-15

> BS16725.3prime
ATGGTCTAGAAAGCTTTTATAGCACATGCAGATTCTCGCAGCTCTTCGAC
TTGGAGATGTCGCTGAGGCAGATCTTCTGCAGCAGTTCCTTGGCCAAGTG
CAGCGATATGTGGGTGCGGGAAGTCTTCATCTTCGAGGCGGTGGCCTTTT
TCTCCCGCTTCTCTTTCAGCCGCATCTGCTTCAATATGCCGACGAGCAGC
TCATCGACGTTGTGCTGTATGCCGCTAGACGTCTCAATAAATTTGGCATC
GCGTGAGGCGGCCAGCGCTTTGCCCTCCTGTGATGTGATAAGCCGGGCGC
GGGCCAGATCCGCCTTGTTGCCCACCAGTATGACAGCCTTGTCCTTGGTG
TAGTTCTCCTGCCACAGGTAATTTATGATTTCCTCGGCCACGCGGAAGGA
GCTGCGATCCACCACCGAGAAGACCACGACGCAGCCATGTGGCTCATATG
TGGATAGGGAGTTCTCCACGCTCATCTCAACGCTTGGATGGTCGATGAAG
ACCATGTCCGACTCCTCATCGTCCAGCAGCACGCTCACCGTCTTCTCGCC
GAACTCGTCGTCCAGGCTGGCGTCATAGGTGTGCATGTACTCCGACGTCA
TGAACTGATTGACCAGCGCCGTCTTGCCCACGCCGGCATCGCCCAGCATC
ACGACGCGGTAGCGGGCGGGCGGAGGTGGATCCAAATTCTCCGAGTCATC
CGGTGTTGCCGGCAGCGAATCCACATTGGCATAGCCCGCTCCGCAACAGC
TGCCCTCGAATGGGGAACGTTCGCTGGCCCGGCTGTTTGTCGAGTTGACG
CTGGTGTTGCTTCGCGATCTCCGCGAGATTATCGAGTCGCCACAGTTAAC
CACGTTGCCCTTGCTG

BS16725.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15069-PA 2223 Rgk2-RA 1374..2223 866..17 4250 100 Minus
CG15069-PB 633 Rgk2-RB 1..633 649..17 3165 100 Minus
CG9811-PA 1614 Rgk1-RA 1575..1607 56..24 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
Rgk2-RA 4903 CG34390-RA 2093..2943 866..16 4255 100 Minus
Rgk2-RC 4522 CG34390-RC 1706..2562 866..16 4185 99.3 Minus
Rgk1-RB 5443 CG44011-RB 4459..4579 662..542 215 79.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:00:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18545420..18545724 866..562 1525 100 Minus
2R 25286936 2R 18545896..18546181 562..277 1430 100 Minus
2R 25286936 2R 18546847..18547009 178..16 815 100 Minus
2R 25286936 2R 18546256..18546357 277..176 510 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:00:48 has no hits.

BS16725.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:13 Download gff for BS16725.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15069-PA 1374..2223 17..866 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:38:01 Download gff for BS16725.3prime
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 2093..2949 9..866 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:38:07 Download gff for BS16725.3prime
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 2093..2949 9..866 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:38:07 Download gff for BS16725.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18545420..18545724 562..866 100 -> Minus
2R 18545897..18546181 277..561 100 -> Minus
2R 18546257..18546357 176..276 100 -> Minus
2R 18546850..18547015 9..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:38:01 Download gff for BS16725.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14432925..14433229 562..866 100 -> Minus
arm_2R 14433402..14433686 277..561 100 -> Minus
arm_2R 14433762..14433862 176..276 100 -> Minus
arm_2R 14434355..14434520 9..175 98   Minus

BS16725.5prime Sequence

903 bp (783 high quality bases) assembled on 2007-05-15

> BS16725.5prime
GAAGTTATCAGTCGACATGGCCCAGCAACAGCGCAGCTGGGACGAGGGAG
CTGTCGGTGGAGGATCCTATGGCCATCCCCACTCCTCGCACCACAAAGTA
CCTGCTCGCGCTGCCAGCAATCCGCTGCCCTGCAAAGGAGCCACTCCCAA
GCTGCCCAGGCAATACCATGGAGGTCCGACGTCGAGCTATAACTATGGAG
GATATGATACCCCGAGGAGTCCCAAGATCACCACCACCTTTGCCCAAGAC
AGTTGTGATGATGTCAGTAGCTCCACGCCCAGCTCCTATTATCAGACGCC
CCCATCGGGATCGATAGATGATTCGGCATCTCTGCTCAGTGGACGCACCA
CTGCCCGCAGTCCCAAGTCGCAGTGCCAGTTCGTCTTTGATGCAGTGAGT
CCCAGTCACGGAAGGAAGTTCGAGTACTACGAACCGATCTCGCCAGACGA
TGGAGCTCTCTACTATGATCCACCCAGTTCGCCACGTCGGCAGGGTTCCA
AAAAGTTAATGAGAACAAAGACCCCACTGGATCCCGTTCCCCAATTGACT
ACGACAGGCGTGGATGAGAGCATGGCGGTGGCTATGGCCATGGGCGGAGC
AGGAGGTGGAGGTTACGCCCAAGGAGGACCAAACAAGCGGCAGAGAGATG
AGTGGGAACTACCGGTGATCAGCAAGATCGAGGCGAGAAACCTAAGTGCG
GCTGCAGGATCAAGCTCGGCTGGAGGAAGTTATTATGGCTTGAAGCGCGA
CTCCTGCGTCACAGACTGCACGCAGCTGTCTATGGAATCCGGCGAGACGG
GTACCCAGCATACCAATAGCACCATGGTGACCCACACCACCACCAGCTTT
AGCTTTACNGAGCCGGAAATGGAGCAAGAGGCTGGACAGCCCGCATTACG
GCG

BS16725.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG15069-PA 2223 Rgk2-RA 1..875 17..891 4331 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rgk2-RC 4522 CG34390-RC 333..1219 17..903 4364 99.5 Plus
Rgk2-RA 4903 CG34390-RA 720..1606 17..903 4364 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18544117..18544863 157..903 3664 99.3 Plus
2R 25286936 2R 18543921..18544064 17..160 720 100 Plus
Blast to na_te.dros performed on 2015-02-11 04:10:12 has no hits.

BS16725.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:27 Download gff for BS16725.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15069-PA 1..887 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:32 Download gff for BS16725.5prime
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 713..1606 8..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:21 Download gff for BS16725.5prime
Subject Subject Range Query Range Percent Splice Strand
Rgk2-RA 713..1606 8..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:21 Download gff for BS16725.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18543909..18544063 3..159 96 -> Plus
2R 18544120..18544863 160..903 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:32 Download gff for BS16725.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14431414..14431568 3..159 96 -> Plus
arm_2R 14431625..14432368 160..903 99   Plus

BS16725.pep Sequence

Translation from 16 to 2238

> BS16725.pep
MAQQQRSWDEGAVGGGSYGHPHSSHHKVPARAASNPLPCKGATPKLPRQY
HGGPTSSYNYGGYDTPRSPKITTTFAQDSCDDVSSSTPSSYYQTPPSGSI
DDSASLLSGRTTARSPKSQCQFVFDAVSPSHGRKFEYYEPISPDDGALYY
DPPSSPRRQGSKKLMRTKTPLDPVPQLTTTGVDESMAVAMAMGGAGGGGY
AQGGPNKRQRDEWELPVISKIEARNLSAAAGSSSAGGSYYGLKRDSCVTD
CTQLSMESGETGTQHTNSTMVTHTTTSFSFTEPEMEQEAGQPQLRRQRRH
AINITSNPGYQVLHSSHSTLDRTCSDSVVSLRYRKSTSDLTQDAEHELSG
CKPNKPKAHVEHKPRRRGSSKGGLAYLASRRSSRESMKSACSNASIVSND
DVGPLAFQSSNRGRQRRTSNFLELPVPDHVRPRVCSLPERPYNPRASDDL
YRLRHFSISKGNVVNCGDSIISRRSRSNTSVNSTNSRASERSPFEGSCCG
AGYANVDSLPATPDDSENLDPPPPARYRVVMLGDAGVGKTALVNQFMTSE
YMHTYDASLDDEFGEKTVSVLLDDEESDMVFIDHPSVEMSVENSLSTYEP
HGCVVVFSVVDRSSFRVAEEIINYLWQENYTKDKAVILVGNKADLARARL
ITSQEGKALAASRDAKFIETSSGIQHNVDELLVGILKQMRLKEKREKKAT
ASKMKTSRTHISLHLAKELLQKICLSDISKSKSCENLHVL*

BS16725.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:57:49
Subject Length Description Subject Range Query Range Score Percent Strand
Rgk2-PA 740 CG34390-PA 1..740 1..740 3862 100 Plus
Rgk2-PC 742 CG34390-PC 1..742 1..740 3849 99.7 Plus
Rgk1-PA 498 CG44011-PA 150..498 431..740 692 46.5 Plus
Rgk1-PB 1379 CG44011-PB 1031..1379 431..740 692 46.5 Plus
Rgk1-PC 514 CG44011-PC 150..514 431..740 665 44.5 Plus