Clone BS16733 Report

Search the DGRC for BS16733

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:167
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptSpdS-RA
Protein status:BS16733.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS16733.3prime Sequence

894 bp (807 high quality bases) assembled on 2007-05-15

> BS16733.3prime
ATGGTCTAGAAAGCTTTCATTCGTAAAAGTGCTTCTGCACCCATCGAGGC
AAGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTAT
AGAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTT
TGTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGA
ACGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGA
CATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGG
AGCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAG
CTTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGT
GATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCAT
CGCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCT
GGGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTG
ATGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGC
CATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAG
AGCGGCAGGAAAGATATCATCTCCTGGTACGAGAACTCATCCCTGGCCGT
GCACTGAATGATTCCGTCCAGAATTAGGCACCGTCCATAGGTTTCGGTTT
CAACGATCTGGATGTCTTGGAACCGGGACTTCTCCTTGTGGATGACCTCC
TTGACTTTCAGGGAGAATGACTGACCGGGCCAGAGATCGGCCTGCAGTTC
GCTGAACCATCCGTTGTTAAGGGAATCCATGTCGACTGATAACT

BS16733.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 1..864 880..17 4320 100 Minus
CG8327-PB 654 SpdS-RB 1..654 670..17 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 51..914 880..17 4320 100 Minus
SpdS-RA 1511 CG8327-RA 81..944 880..17 4320 100 Minus
SpdS-RB 1189 CG8327-RB 379..1108 746..17 3650 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9633106 746..17 3650 100 Minus
3R 32079331 3R 9631721..9631854 880..747 670 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:17:37 has no hits.

BS16733.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:32 Download gff for BS16733.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PA 1..864 17..880 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:23 Download gff for BS16733.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..951 11..880 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:09:10 Download gff for BS16733.3prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..951 11..880 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:09:10 Download gff for BS16733.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9631721..9631854 747..880 100 -> Minus
3R 9632377..9633113 11..746 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:23 Download gff for BS16733.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457443..5457576 747..880 100 -> Minus
arm_3R 5458099..5458835 11..746 99   Minus

BS16733.5prime Sequence

861 bp (774 high quality bases) assembled on 2007-05-15

> BS16733.5prime
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTTGCT
CGATGGGTGCA

BS16733.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8327-PA 864 SpdS-RA 1..845 17..861 4175 99.7 Plus
CG8327-PB 654 SpdS-RB 1..635 227..861 3125 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 51..895 17..861 4195 99.8 Plus
SpdS-RA 1511 CG8327-RA 81..925 17..861 4195 99.8 Plus
SpdS-RB 1189 CG8327-RB 379..1089 151..861 3525 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:53:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9633087 151..861 3525 99.7 Plus
3R 32079331 3R 9631721..9631854 17..150 670 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:53:35 has no hits.

BS16733.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:39 Download gff for BS16733.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8327-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:49 Download gff for BS16733.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..924 17..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:49 Download gff for BS16733.5prime
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..924 17..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:49 Download gff for BS16733.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9631721..9631854 17..150 100 -> Plus
3R 9632377..9633086 151..860 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:49 Download gff for BS16733.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457443..5457576 17..150 100 -> Plus
arm_3R 5458099..5458808 151..860 99   Plus

BS16733.complete Sequence

896 bp assembled on 2007-05-07

GenBank Submission: FJ638184

> BS16733.complete
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCT
CGATGGGTGCAGAAGCACTTTTACGAATGAAAGCTTTCTAGACCAT

BS16733.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 864 CG8327-PC 1..864 17..880 4320 100 Plus
SpdS-RA 864 CG8327-PA 1..864 17..880 4320 100 Plus
SpdS-RB 654 CG8327-PB 1..654 227..880 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:28
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-RC 995 CG8327-RC 51..914 17..880 4320 100 Plus
SpdS-RA 1511 CG8327-RA 81..944 17..880 4320 100 Plus
SpdS-RB 1189 CG8327-RB 379..1108 151..880 3650 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9632377..9633106 151..880 3650 100 Plus
3R 32079331 3R 9631721..9631854 17..150 670 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:52:25 has no hits.

BS16733.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:10 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 1..864 17..880 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:16 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 63..933 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:16 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..943 17..879 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:10 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 63..933 17..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:35 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
SpdS-RA 81..943 17..879 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:35 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9631721..9631854 17..150 100 -> Plus
3R 9632377..9633105 151..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:16 Download gff for BS16733.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5457443..5457576 17..150 100 -> Plus
arm_3R 5458099..5458827 151..879 100   Plus

BS16733.pep Sequence

Translation from 16 to 879

> BS16733.pep
MDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGR
CLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLIVGGGDGGVAREV
VKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKLKLTIGDGFDYMK
KHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGSFW
LDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFAT
PKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYE*

BS16733.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:48
Subject Length Description Subject Range Query Range Score Percent Strand
SpdS-PC 287 CG8327-PC 1..287 1..287 1526 100 Plus
SpdS-PA 287 CG8327-PA 1..287 1..287 1526 100 Plus
SpdS-PB 217 CG8327-PB 1..217 71..287 1155 100 Plus
CG4300-PB 366 CG4300-PB 140..319 26..196 156 30.4 Plus
CG4300-PA 367 CG4300-PA 141..320 26..196 156 30.4 Plus