Clone Sequence Records
BS16733.3prime Sequence
894 bp (807 high quality bases) assembled on 2007-05-15
> BS16733.3prime
ATGGTCTAGAAAGCTTTCATTCGTAAAAGTGCTTCTGCACCCATCGAGGC
AAGGCAAAGGCGGCGGAGTGAACCTCGGAGGAGTAGTACCTTAGGTCTAT
AGAATCGATTTCGGACTTTCCAAGCTTGGGAGTAGCGAAGTCCTGGTTTT
TGTTCAGGGAGCCCATGACGAAGCCAATGTGGCCGCAGGGATAGGACGGA
ACGGAGGTGACGGCATAGGCCACCTTAGCAAAGTGCTCCTTGCAGCCGGA
CATGGTCTTCTTGATGTAGTCCAGGTCCAGCCAGAAGCTACCGCCCTGGG
AGCACACGATTCCGTCATCCTTCAGCGCGTGTTTCATTAGCTCGTAGTAG
CTTTCCTGAAACAGGCTCACTGCCGGACCAATGGGATCCGAGCTGTCGGT
GATGATGACATCAAATTCGTTCTTGTGTTTCTTCATATAGTCGAATCCAT
CGCCAATGGTAAGCTTCAACTTCTCGTTGGCGAAACCACAGGCCATCGCT
GGGAGATATTGCTTGGACAGCTCGACGACACGGTCGTCGATTTCCACCTG
ATGCACTTCCTCGACCAGTGGATGCTTTACCACCTCGCGAGCAACGCCGC
CATCGCCACCGCCCACGATCAGGACCTTTTTGGGATTGGGATGGGCGCAG
AGCGGCAGGAAAGATATCATCTCCTGGTACGAGAACTCATCCCTGGCCGT
GCACTGAATGATTCCGTCCAGAATTAGGCACCGTCCATAGGTTTCGGTTT
CAACGATCTGGATGTCTTGGAACCGGGACTTCTCCTTGTGGATGACCTCC
TTGACTTTCAGGGAGAATGACTGACCGGGCCAGAGATCGGCCTGCAGTTC
GCTGAACCATCCGTTGTTAAGGGAATCCATGTCGACTGATAACT
BS16733.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 1..864 | 880..17 | 4320 | 100 | Minus |
CG8327-PB | 654 | SpdS-RB | 1..654 | 670..17 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 51..914 | 880..17 | 4320 | 100 | Minus |
SpdS-RA | 1511 | CG8327-RA | 81..944 | 880..17 | 4320 | 100 | Minus |
SpdS-RB | 1189 | CG8327-RB | 379..1108 | 746..17 | 3650 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:17:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9633106 | 746..17 | 3650 | 100 | Minus |
3R | 32079331 | 3R | 9631721..9631854 | 880..747 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:17:37 has no hits.
BS16733.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:13:32 Download gff for
BS16733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PA | 1..864 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:23 Download gff for
BS16733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..951 | 11..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:09:10 Download gff for
BS16733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..951 | 11..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:09:10 Download gff for
BS16733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631721..9631854 | 747..880 | 100 | -> | Minus |
3R | 9632377..9633113 | 11..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:23 Download gff for
BS16733.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457443..5457576 | 747..880 | 100 | -> | Minus |
arm_3R | 5458099..5458835 | 11..746 | 99 | | Minus |
BS16733.5prime Sequence
861 bp (774 high quality bases) assembled on 2007-05-15
> BS16733.5prime
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTTGCT
CGATGGGTGCA
BS16733.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8327-PA | 864 | SpdS-RA | 1..845 | 17..861 | 4175 | 99.7 | Plus |
CG8327-PB | 654 | SpdS-RB | 1..635 | 227..861 | 3125 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 51..895 | 17..861 | 4195 | 99.8 | Plus |
SpdS-RA | 1511 | CG8327-RA | 81..925 | 17..861 | 4195 | 99.8 | Plus |
SpdS-RB | 1189 | CG8327-RB | 379..1089 | 151..861 | 3525 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:53:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9633087 | 151..861 | 3525 | 99.7 | Plus |
3R | 32079331 | 3R | 9631721..9631854 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:53:35 has no hits.
BS16733.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 17:08:39 Download gff for
BS16733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8327-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:49 Download gff for
BS16733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..924 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:49 Download gff for
BS16733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..924 | 17..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:49 Download gff for
BS16733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631721..9631854 | 17..150 | 100 | -> | Plus |
3R | 9632377..9633086 | 151..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:49 Download gff for
BS16733.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457443..5457576 | 17..150 | 100 | -> | Plus |
arm_3R | 5458099..5458808 | 151..860 | 99 | | Plus |
BS16733.complete Sequence
896 bp assembled on 2007-05-07
GenBank Submission: FJ638184
> BS16733.complete
GAAGTTATCAGTCGACATGGATTCCCTTAACAACGGATGGTTCAGCGAAC
TGCAGGCCGATCTCTGGCCCGGTCAGTCATTCTCCCTGAAAGTCAAGGAG
GTCATCCACAAGGAGAAGTCCCGGTTCCAAGACATCCAGATCGTTGAAAC
CGAAACCTATGGACGGTGCCTAATTCTGGACGGAATCATTCAGTGCACGG
CCAGGGATGAGTTCTCGTACCAGGAGATGATATCTTTCCTGCCGCTCTGC
GCCCATCCCAATCCCAAAAAGGTCCTGATCGTGGGCGGTGGCGATGGCGG
CGTTGCTCGCGAGGTGGTAAAGCATCCACTGGTCGAGGAAGTGCATCAGG
TGGAAATCGACGACCGTGTCGTCGAGCTGTCCAAGCAATATCTCCCAGCG
ATGGCCTGTGGTTTCGCCAACGAGAAGTTGAAGCTTACCATTGGCGATGG
ATTCGACTATATGAAGAAACACAAGAACGAATTTGATGTCATCATCACCG
ACAGCTCGGATCCCATTGGTCCGGCAGTGAGCCTGTTTCAGGAAAGCTAC
TACGAGCTAATGAAACACGCGCTGAAGGATGACGGAATCGTGTGCTCCCA
GGGCGGTAGCTTCTGGCTGGACCTGGACTACATCAAGAAGACCATGTCCG
GCTGCAAGGAGCACTTTGCTAAGGTGGCCTATGCCGTCACCTCCGTTCCG
TCCTATCCCTGCGGCCACATTGGCTTCGTCATGGGCTCCCTGAACAAAAA
CCAGGACTTCGCTACTCCCAAGCTTGGAAAGTCCGAAATCGATTCTATAG
ACCTAAGGTACTACTCCTCCGAGGTTCACTCCGCCGCCTTTGCCTTGCCT
CGATGGGTGCAGAAGCACTTTTACGAATGAAAGCTTTCTAGACCAT
BS16733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 864 | CG8327-PC | 1..864 | 17..880 | 4320 | 100 | Plus |
SpdS-RA | 864 | CG8327-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
SpdS-RB | 654 | CG8327-PB | 1..654 | 227..880 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-RC | 995 | CG8327-RC | 51..914 | 17..880 | 4320 | 100 | Plus |
SpdS-RA | 1511 | CG8327-RA | 81..944 | 17..880 | 4320 | 100 | Plus |
SpdS-RB | 1189 | CG8327-RB | 379..1108 | 151..880 | 3650 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9632377..9633106 | 151..880 | 3650 | 100 | Plus |
3R | 32079331 | 3R | 9631721..9631854 | 17..150 | 670 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:52:25 has no hits.
BS16733.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:30:10 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:02:16 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 63..933 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:16 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..943 | 17..879 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:30:10 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 63..933 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:35 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
SpdS-RA | 81..943 | 17..879 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:35 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9631721..9631854 | 17..150 | 100 | -> | Plus |
3R | 9632377..9633105 | 151..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:16 Download gff for
BS16733.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5457443..5457576 | 17..150 | 100 | -> | Plus |
arm_3R | 5458099..5458827 | 151..879 | 100 | | Plus |
BS16733.pep Sequence
Translation from 16 to 879
> BS16733.pep
MDSLNNGWFSELQADLWPGQSFSLKVKEVIHKEKSRFQDIQIVETETYGR
CLILDGIIQCTARDEFSYQEMISFLPLCAHPNPKKVLIVGGGDGGVAREV
VKHPLVEEVHQVEIDDRVVELSKQYLPAMACGFANEKLKLTIGDGFDYMK
KHKNEFDVIITDSSDPIGPAVSLFQESYYELMKHALKDDGIVCSQGGSFW
LDLDYIKKTMSGCKEHFAKVAYAVTSVPSYPCGHIGFVMGSLNKNQDFAT
PKLGKSEIDSIDLRYYSSEVHSAAFALPRWVQKHFYE*
BS16733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:26:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
SpdS-PC | 287 | CG8327-PC | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PA | 287 | CG8327-PA | 1..287 | 1..287 | 1526 | 100 | Plus |
SpdS-PB | 217 | CG8327-PB | 1..217 | 71..287 | 1155 | 100 | Plus |
CG4300-PB | 366 | CG4300-PB | 140..319 | 26..196 | 156 | 30.4 | Plus |
CG4300-PA | 367 | CG4300-PA | 141..320 | 26..196 | 156 | 30.4 | Plus |